From a523e0bc376d6d053593eb624462682cc7c53a0a Mon Sep 17 00:00:00 2001
From: Carter Thunes <Thunes.Carter@epa.gov>
Date: Tue, 15 Oct 2024 16:52:08 -0400
Subject: [PATCH] add r cmd check yaml to actions workflows

---
 .github/.gitignore                 |  1 +
 .github/workflows/R-CMD-check.yaml | 52 ++++++++++++++++++++++++++++++
 README.Rmd                         |  2 +-
 README.md                          |  2 +-
 4 files changed, 55 insertions(+), 2 deletions(-)
 create mode 100644 .github/.gitignore
 create mode 100644 .github/workflows/R-CMD-check.yaml

diff --git a/.github/.gitignore b/.github/.gitignore
new file mode 100644
index 0000000..2d19fc7
--- /dev/null
+++ b/.github/.gitignore
@@ -0,0 +1 @@
+*.html
diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
new file mode 100644
index 0000000..19c1af2
--- /dev/null
+++ b/.github/workflows/R-CMD-check.yaml
@@ -0,0 +1,52 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, dev]
+  pull_request:
+    branches: [main, dev]
+
+name: R-CMD-check.yaml
+
+permissions: read-all
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: macos-latest,   r: 'release'}
+          - {os: windows-latest, r: 'release'}
+          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
+          - {os: ubuntu-latest,   r: 'release'}
+          - {os: ubuntu-latest,   r: 'oldrel-1'}
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+          needs: check
+
+      - uses: r-lib/actions/check-r-package@v2
+        with:
+          upload-snapshots: true
+          build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'
diff --git a/README.Rmd b/README.Rmd
index 774259f..11ae8ba 100644
--- a/README.Rmd
+++ b/README.Rmd
@@ -21,7 +21,7 @@ knitr::opts_chunk$set(
 [![Active](http://img.shields.io/badge/Status-Active-green.svg)](https://cran.r-project.org/package=tcpl) 
 [![Monthly Downloads](https://cranlogs.r-pkg.org/badges/last-month/tcpl?color=7BAFD4)](https://cranlogs.r-pkg.org/badges/last-month/tcpl?color=7BAFD4)
 [![DOI](https://zenodo.org/badge/doi/	10.32614/CRAN.package.tcpl.svg)](http://dx.doi.org/10.32614/CRAN.package.tcpl)
-
+[![R-CMD-check](https://github.com/USEPA/CompTox-ToxCast-tcpl/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/USEPA/CompTox-ToxCast-tcpl/actions/workflows/R-CMD-check.yaml)
 <!-- badges: end -->
 
 ## Welcome to the GitHub repository for the tcpl package.
diff --git a/README.md b/README.md
index 40cf4fb..1e81c83 100644
--- a/README.md
+++ b/README.md
@@ -10,7 +10,7 @@
 [![Monthly
 Downloads](https://cranlogs.r-pkg.org/badges/last-month/tcpl?color=7BAFD4)](https://cranlogs.r-pkg.org/badges/last-month/tcpl?color=7BAFD4)
 [![DOI](https://zenodo.org/badge/doi/%2010.32614/CRAN.package.tcpl.svg)](http://dx.doi.org/10.32614/CRAN.package.tcpl)
-
+[![R-CMD-check](https://github.com/USEPA/CompTox-ToxCast-tcpl/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/USEPA/CompTox-ToxCast-tcpl/actions/workflows/R-CMD-check.yaml)
 <!-- badges: end -->
 
 ## Welcome to the GitHub repository for the tcpl package.