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Goal: The goal of this issue is to create unit tests for high-throughput transcriptomics (HTTR) gene data such that we ensure that as the codebase of tcplfit2 is updated that the updates do not break/alter the results previously obtained in previous analyses with tcplfit2.
Needs for finishing this ticket:
Choose a manageable subset of the overall data provided by the HTTR team - verify the chosen set covers many (if not all) scenarios of interest
Create an RData file for the package (may want to ensure we do NOT want this to be exported from the package)
Create a unit test ensuring that the results for HTTR remain consistent from version to version of tcplfit2
The text was updated successfully, but these errors were encountered:
sedavid01
changed the title
Create unit tests for HTTR data fit with tcplfit2
Create unit tests for HTTR gene data fit with tcplfit2
Sep 12, 2023
utilize the previous used criteria for HTPP to fulfill needs we need to meet
randomly select 50 genes (covering the previous bullet) as a baseline number of genes to select - make sure to account for the amount of time it takes to fit and test with these first 50. If the time is relatively fast - no longer than a few minutes - then may look to bump up to 100 genes.
Goal: The goal of this issue is to create unit tests for high-throughput transcriptomics (HTTR) gene data such that we ensure that as the codebase of tcplfit2 is updated that the updates do not break/alter the results previously obtained in previous analyses with tcplfit2.
Needs for finishing this ticket:
The text was updated successfully, but these errors were encountered: