diff --git a/MD5 b/MD5 index a4be22a..b0948b9 100644 --- a/MD5 +++ b/MD5 @@ -1,18 +1,15 @@ 3fe0b2d4c41b6a7ddea1fcc2dc0742a0 *CITATION.cff f4ff2345ea66f98028bea8e07bb9b6fa *codemeta.json -6e5839d0c24939143566d26d7f427fce *cran-comments.md -6e5839d0c24939143566d26d7f427fce *cran-comments.Rmd +f23acac14695c5462de4314fa75430e3 *cran-comments.md +f23acac14695c5462de4314fa75430e3 *cran-comments.Rmd 8d3b9fa84140908686c8837fa1056041 *DESCRIPTION -1dc95961c4c280f8645a65d15662725f *dev/contributing.md -4fc13def6ec5d889261f1f22a13ba542 *dev/contributing.Rmd -74e297a0dc0b508ed18e3821264958d0 *dev/countlinesofcode.R -ed21caa73378a9cdf8de4df12cc848c0 *dev/install_RAQSAPI.R +8a7c374ea899fdf7b47ea6d072ccdbb2 *dev/install_RAQSAPI.R 3c41777493d242206848842b6ba74fde *inst/CITATION 3df907b50c4f00bc26ee6d988e0c849f *inst/codecov.yml dd65d70b425fb86f7c8b6d8841a837d8 *inst/schemaorg.json c249300fd572e8b3c57b98e3d3c8745b *inst/WORDLIST -e5b82cf7f3c21891bc0643f662a3f1ba *LICENSE -9b3dc9e54281bcaa0a530371869f506c *LICENSE.md +45debbc6b92dbaf5719baf2c43270a65 *LICENSE +c5bffddb343250b2b520a814d997c7e2 *LICENSE.md e7ec2b281fcab3d1b34b26031438438a *man/aqs_annualsummary_by_box.Rd d1d918f6c862480e64b271aa8b72be41 *man/aqs_annualsummary_by_cbsa.Rd d682bb12ed8b47b849aca4c183c1f543 *man/aqs_annualsummary_by_county.Rd @@ -131,9 +128,9 @@ d82b1ff8ee144afca1879e5b8dc58840 *R/byma.R cebed24e7ab755d8642a74c7e9b80fd5 *R/RAQSAPIlistfunctions.R e6e3b87e48f4403642382987b0f40714 *R/setupfunctions.R 6e659bb3bbf313dc819d4c029f0b22d0 *R/zzz.R -25bf50b0ec79d01de8b83b7b5801b4ac *RAQSAPI.code-workspace +28e6c7462fb8ab91cc2dde6256ae17be *RAQSAPI.code-workspace a69de5455537022556f014579766be59 *RAQSAPI.Rproj -1ef6fd253bab1a2805a72a3777e9eff2 *README.md +b7ee9560cf30cd92e03d19da5cb73d1e *README.md 9e80ce935498c732a40296459634eb91 *README.Rmd 7ed08f3fb96a77ec01c95c2ad7964250 *revdep/data.sqlite 34952a5944548ea4fc132a9899f8e6ab *revdep/email.yml @@ -1338,29 +1335,29 @@ 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*vignettes/RAQSAPIvignette.R +374ceeb02a3fda1d19931ae3043f84bc *vignettes/RAQSAPIvignette.html +19a760790078cde3a3a9cf3ad9d1656a *vignettes/RAQSAPIvignette.R 95acca4cbbfe5ebbfcb4c0a3978038bf *vignettes/RAQSAPIvignette.Rmd -42a066ce73b20f2538877f8e4eac1d84 *vignettes/TimelinessofAQSData.html +424e09fb59f3b130e7a5df1b687232e6 *vignettes/TimelinessofAQSData.html fddf2cec564191b24c0213f260c0f932 *vignettes/TimelinessofAQSData.Rmd 3c09aefb6ebd2dd7f1e623f3eb341b6e *vignettes/Troubleshooting.html 9388c6af388ceb5b62fee3e414452c83 *vignettes/Troubleshooting.Rmd -2f01e9fde3b3c8b82aafc174e2b66833 *vignettes/UsingRAQSAPI.html +4ef4fb61246144b012ef536e824b4f96 *vignettes/UsingRAQSAPI.html 969189538d2ec6a0e10ea6d7350ab612 *vignettes/UsingRAQSAPI.Rmd diff --git a/README.md b/README.md index 55a30cd..1d33b70 100644 --- a/README.md +++ b/README.md @@ -39,7 +39,7 @@ status](https://www.r-pkg.org/badges/version/RAQSAPI)](https://CRAN.R-project.or downloads](https://cranlogs.r-pkg.org/badges/RAQSAPI)](https://cran.r-project.org/package=RAQSAPI) [![lifecycle](https://img.shields.io/badge/lifecycle-maturing-blue.svg)](https://lifecycle.r-lib.org/articles/stages.html) [![license](https://img.shields.io/badge/license-CC0-lightgrey.svg)](https://choosealicense.com/) -“[![Last-changedate](https://img.shields.io/badge/last%20change-%202024--06--10-yellowgreen.svg)](/commits/master)” +“[![Last-changedate](https://img.shields.io/badge/last%20change-%202024--06--12-yellowgreen.svg)](/commits/master)” # EPA Disclaimer diff --git a/cran-comments.Rmd b/cran-comments.Rmd index 3f02685..817efba 100644 --- a/cran-comments.Rmd +++ b/cran-comments.Rmd @@ -44,11 +44,13 @@ output: md_document + usethis::use_github_pages() to create a github page. ### Test environments -* local R installation, Windows 11 R 4.3.1 -* Windows-latest (release) (via Github_actions), R 4.2.1 -* macOS-latest (release) (via Github_actions), R 4.2.1 -* ubuntu-20.04 (release) (via Github_actions), R 4.2.1 -* ubuntu-20.04 (devel) (via Github_actions), R +* local R installation, Windows 11 R 4.4.0 +* Windows-latest (release) (via Github_actions), R 4.4.0 +* MacOS-latest (release) (via Github_actions), R 4.4.0 +* Ubuntu-22.04.4 (release) (via Github_actions), R 4.4.0.1 +* Ubuntu-22.04.4 (devel) (via Github_actions), R (unstable) (2024-06-10 + r86715) +* Ubuntu-22.04.4 (old-release) (via Github_actions), R 4.3.3 ## RAQSAPI 2.0.4 *Important API change diff --git a/cran-comments.md b/cran-comments.md index 3f02685..817efba 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -44,11 +44,13 @@ output: md_document + usethis::use_github_pages() to create a github page. ### Test environments -* local R installation, Windows 11 R 4.3.1 -* Windows-latest (release) (via Github_actions), R 4.2.1 -* macOS-latest (release) (via Github_actions), R 4.2.1 -* ubuntu-20.04 (release) (via Github_actions), R 4.2.1 -* ubuntu-20.04 (devel) (via Github_actions), R +* local R installation, Windows 11 R 4.4.0 +* Windows-latest (release) (via Github_actions), R 4.4.0 +* MacOS-latest (release) (via Github_actions), R 4.4.0 +* Ubuntu-22.04.4 (release) (via Github_actions), R 4.4.0.1 +* Ubuntu-22.04.4 (devel) (via Github_actions), R (unstable) (2024-06-10 + r86715) +* Ubuntu-22.04.4 (old-release) (via Github_actions), R 4.3.3 ## RAQSAPI 2.0.4 *Important API change diff --git a/vignettes/RAQSAPIFunctions-Long.R b/vignettes/RAQSAPIFunctions-Long.R index 7167f05..e4edfb5 100644 --- a/vignettes/RAQSAPIFunctions-Long.R +++ b/vignettes/RAQSAPIFunctions-Long.R @@ -1,4 +1,4 @@ -## ----RAQSAPIfun_all, echo = FALSE, comment = NA--------------------------------------------------------------------------------------------------------------------------------------------------------------------- +## ----RAQSAPIfun_all, echo = FALSE, comment = NA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- knitr::opts_chunk$set(collapse = TRUE, comment = "#>" ) invisible(library(magrittr, warn.conflicts = FALSE, quietly = TRUE)) invisible(library(stringr, warn.conflicts = FALSE, quietly = TRUE)) @@ -106,13 +106,13 @@ RAQSAPI_functions <- c( RAQSAPI_functions %>% cat(sep = " \n") -## ----SIGNUPANDCREDENTIALS, echo = FALSE, comment = NA--------------------------------------------------------------------------------------------------------------------------------------------------------------- +## ----SIGNUPANDCREDENTIALS, echo = FALSE, comment = NA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- signupandcredentials <- paste(".sign_up", ".credentials", sep = '|') str_subset(string = RAQSAPI_functions, pattern = signupandcredentials) %>% cat(sep = " \n") -## ----METADATAFUNCTIONS, echo = FALSE, comment = NA------------------------------------------------------------------------------------------------------------------------------------------------------------------ +## ----METADATAFUNCTIONS, echo = FALSE, comment = NA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- metadatafunctions <- paste(".available", ".fields_by_service", ".knownissues", sep = '|') @@ -120,7 +120,7 @@ metadatafunctions <- paste(".available", str_subset(string = RAQSAPI_functions, pattern = metadatafunctions) %>% cat(sep = " \n") -## ----LISTFUNCTIONS, echo = FALSE, comment = NA---------------------------------------------------------------------------------------------------------------------------------------------------------------------- +## ----LISTFUNCTIONS, echo = FALSE, comment = NA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- listfunctions <- paste(".states", ".counties_by_state", ".sites_by_county", @@ -134,49 +134,49 @@ listfunctions <- paste(".states", str_subset(string = RAQSAPI_functions, pattern = listfunctions) %>% cat(sep = " \n") -## ----_by_Sitefunctions, echo = FALSE, comment = NA------------------------------------------------------------------------------------------------------------------------------------------------------------------ +## ----_by_Sitefunctions, echo = FALSE, comment = NA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- by_sitefunctions <- paste("_by_site", sep = '|') str_subset(string = RAQSAPI_functions, pattern = by_sitefunctions) %>% cat(sep = " \n") -## ----_by_countyfuncions, echo = FALSE, comment = NA----------------------------------------------------------------------------------------------------------------------------------------------------------------- +## ----_by_countyfuncions, echo = FALSE, comment = NA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- by_countyfunctions <- paste("._by_county", sep = '|') str_subset(string = RAQSAPI_functions, pattern = by_countyfunctions) %>% cat(sep = " \n") -## ----_by_STATEfunctions, echo = FALSE, comment = NA----------------------------------------------------------------------------------------------------------------------------------------------------------------- +## ----_by_STATEfunctions, echo = FALSE, comment = NA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- by_STATEfunctions <- paste("._by_state", sep = '|') str_subset(string = RAQSAPI_functions, pattern = by_STATEfunctions) %>% cat(sep = " \n") -## ----_by_MAfunctions, echo = FALSE, comment = NA-------------------------------------------------------------------------------------------------------------------------------------------------------------------- +## ----_by_MAfunctions, echo = FALSE, comment = NA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- by_MAfunctions <- paste("._by_MA", sep = '|') str_subset(string = RAQSAPI_functions, pattern = by_MAfunctions) %>% cat(sep = " \n") -## ----bycbsafunctions, echo = FALSE, comment = NA-------------------------------------------------------------------------------------------------------------------------------------------------------------------- +## ----bycbsafunctions, echo = FALSE, comment = NA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- by_cbsafunctions <- paste("._by_cbsa", sep = '|') str_subset(string = RAQSAPI_functions, pattern = by_cbsafunctions) %>% cat(sep = " \n") -## ----_by_pqaofunctions, echo = FALSE, comment = NA------------------------------------------------------------------------------------------------------------------------------------------------------------------ +## ----_by_pqaofunctions, echo = FALSE, comment = NA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- by_pqaofunctions <- paste("._by_pqao", sep = '|') str_subset(string = RAQSAPI_functions, pattern = by_pqaofunctions) %>% cat(sep = " \n") -## ----_by_BOXfunctions, echo = FALSE, comment = NA------------------------------------------------------------------------------------------------------------------------------------------------------------------- +## ----_by_BOXfunctions, echo = FALSE, comment = NA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ by_BOXfunctions <- paste("._by_box", sep = '|') str_subset(string = RAQSAPI_functions, pattern = by_BOXfunctions) %>% cat(sep = " \n") -## ----misc, echo = FALSE, comment = NA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- +## ----misc, echo = FALSE, comment = NA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ misc_functions <- paste("aqs_removeheader", sep = '|') str_subset(string = RAQSAPI_functions, pattern = misc_functions) %>% diff --git a/vignettes/RAQSAPIPurpose.R b/vignettes/RAQSAPIPurpose.R index fac4ce4..51c7332 100644 --- a/vignettes/RAQSAPIPurpose.R +++ b/vignettes/RAQSAPIPurpose.R @@ -1,4 +1,4 @@ -## ----setup, include = FALSE------------------------------------------------------------------------------------------------------------ +## ----setup, include = FALSE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- knitr::opts_chunk$set( collapse = TRUE, comment = "#>" diff --git a/vignettes/RAQSAPIvignette.R b/vignettes/RAQSAPIvignette.R index b8ee562..7120c29 100644 --- a/vignettes/RAQSAPIvignette.R +++ b/vignettes/RAQSAPIvignette.R @@ -1,4 +1,4 @@ -## ----SETUP, echo = FALSE, message = FALSE, warning = FALSE----------------------------------------------------------------------------- +## ----SETUP, echo = FALSE, message = FALSE, warning = FALSE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- invisible(library(glue, warn.conflicts = FALSE, quietly = TRUE)) #usethisurl <- "https://usethis.r-lib.org" @@ -7,7 +7,7 @@ invisible(library(glue, warn.conflicts = FALSE, quietly = TRUE)) #patsetuplink <- glue::glue("{usethisurl}{usethissetup}{usethispatsection}") -## ----RAQSAPIfun_all, echo = FALSE, comment = NA---------------------------------------------------------------------------------------- +## ----RAQSAPIfun_all, echo = FALSE, comment = NA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- knitr::opts_chunk$set(collapse = TRUE, comment = "#>" ) invisible(library(magrittr, warn.conflicts = FALSE, quietly = TRUE)) invisible(library(stringr, warn.conflicts = FALSE, quietly = TRUE)) @@ -115,21 +115,21 @@ RAQSAPI_functions <- c( RAQSAPI_functions %>% cat(sep = " \n") -## ----SIGNUPANDCREDENTIALS, echo = FALSE, comment = NA---------------------------------------------------------------------------------- +## ----SIGNUPANDCREDENTIALS, echo = FALSE, comment = NA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- signupandcredentials <- paste(".sign_up", ".credentials", sep = '|') str_subset(string = RAQSAPI_functions, pattern = signupandcredentials) %>% cat(sep = " \n") -## ----METADATAFUNCTIONS, echo = FALSE, comment = NA------------------------------------------------------------------------------------- +## ----METADATAFUNCTIONS, echo = FALSE, comment = NA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- metadatafunctions <- paste(".available", - ".field_by_service", + ".fields_by_service", ".knownissues", sep = '|') str_subset(string = RAQSAPI_functions, pattern = metadatafunctions) %>% cat(sep = " \n") -## ----LISTFUNCTIONS, echo = FALSE, comment = NA----------------------------------------------------------------------------------------- +## ----LISTFUNCTIONS, echo = FALSE, comment = NA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- listfunctions <- paste(".states", ".counties_by_state", ".sites_by_county", @@ -143,54 +143,54 @@ listfunctions <- paste(".states", str_subset(string = RAQSAPI_functions, pattern = listfunctions) %>% cat(sep = " \n") -## ----_by_Sitefunctions, echo = FALSE, comment = NA------------------------------------------------------------------------------------- +## ----_by_Sitefunctions, echo = FALSE, comment = NA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- by_sitefunctions <- paste("_by_site", sep = '|') str_subset(string = RAQSAPI_functions, pattern = by_sitefunctions) %>% cat(sep = " \n") -## ----_by_countyfuncions, echo = FALSE, comment = NA------------------------------------------------------------------------------------ +## ----_by_countyfuncions, echo = FALSE, comment = NA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- by_countyfunctions <- paste("._by_county", sep = '|') str_subset(string = RAQSAPI_functions, pattern = by_countyfunctions) %>% cat(sep = " \n") -## ----_by_STATEfunctions, echo = FALSE, comment = NA------------------------------------------------------------------------------------ +## ----_by_STATEfunctions, echo = FALSE, comment = NA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- by_STATEfunctions <- paste("._by_state", sep = '|') str_subset(string = RAQSAPI_functions, pattern = by_STATEfunctions) %>% cat(sep = " \n") -## ----_by_MAfunctions, echo = FALSE, comment = NA--------------------------------------------------------------------------------------- +## ----_by_MAfunctions, echo = FALSE, comment = NA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- by_MAfunctions <- paste("._by_MA", sep = '|') str_subset(string = RAQSAPI_functions, pattern = by_MAfunctions) %>% cat(sep = " \n") -## ----bycbsafunctions, echo = FALSE, comment = NA--------------------------------------------------------------------------------------- +## ----bycbsafunctions, echo = FALSE, comment = NA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- by_cbsafunctions <- paste("._by_cbsa", sep = '|') str_subset(string = RAQSAPI_functions, pattern = by_cbsafunctions) %>% cat(sep = " \n") -## ----_by_pqaofunctions, echo = FALSE, comment = NA------------------------------------------------------------------------------------- +## ----_by_pqaofunctions, echo = FALSE, comment = NA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- by_pqaofunctions <- paste("._by_pqao", sep = '|') str_subset(string = RAQSAPI_functions, pattern = by_pqaofunctions) %>% cat(sep = " \n") -## ----_by_BOXfunctions, echo = FALSE, comment = NA-------------------------------------------------------------------------------------- +## ----_by_BOXfunctions, echo = FALSE, comment = NA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ by_BOXfunctions <- paste("._by_box", sep = '|') str_subset(string = RAQSAPI_functions, pattern = by_BOXfunctions) %>% cat(sep = " \n") -## ----misc, echo = FALSE, comment = NA-------------------------------------------------------------------------------------------------- +## ----misc, echo = FALSE, comment = NA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ misc_functions <- paste("aqs_removeheader", sep = '|') str_subset(string = RAQSAPI_functions, pattern = misc_functions) %>% cat(sep = " \n") -## ----setup, include=FALSE-------------------------------------------------------------------------------------------------------------- +## ----setup, include=FALSE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ knitr::opts_chunk$set(echo = TRUE) diff --git a/vignettes/pyaqsapi.R b/vignettes/pyaqsapi.R index fc2f8fc..28ffaba 100644 --- a/vignettes/pyaqsapi.R +++ b/vignettes/pyaqsapi.R @@ -1,3 +1,3 @@ -## ----setup, include=FALSE-------------------------------------------------------------------------------------------------------------- +## ----setup, include=FALSE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ knitr::opts_chunk$set(echo = TRUE)