From eaccf488cf89bf276b09cf2ff309c3361b16c3ca Mon Sep 17 00:00:00 2001
From: Marcelo Lotif <marcelo.lotif@vectorinstitute.ai>
Date: Thu, 29 Feb 2024 12:42:41 -0500
Subject: [PATCH] Finishing merge of pyproject.toml

---
 poetry.lock    | 2258 +++++++++++++++++++++++++++++++++++++++++++++---
 pyproject.toml |    3 +
 2 files changed, 2133 insertions(+), 128 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index 3ec19ed..7d5e456 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,5 +1,126 @@
 # This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand.
 
+[[package]]
+name = "absl-py"
+version = "1.4.0"
+description = "Abseil Python Common Libraries, see https://github.com/abseil/abseil-py."
+optional = false
+python-versions = ">=3.6"
+files = [
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+    {file = "absl_py-1.4.0-py3-none-any.whl", hash = "sha256:0d3fe606adfa4f7db64792dd4c7aee4ee0c38ab75dfd353b7a83ed3e957fcb47"},
+]
+
+[[package]]
+name = "aiohttp"
+version = "3.9.3"
+description = "Async http client/server framework (asyncio)"
+optional = false
+python-versions = ">=3.8"
+files = [
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+]
+
+[package.dependencies]
+aiosignal = ">=1.1.2"
+async-timeout = {version = ">=4.0,<5.0", markers = "python_version < \"3.11\""}
+attrs = ">=17.3.0"
+frozenlist = ">=1.1.1"
+multidict = ">=4.5,<7.0"
+yarl = ">=1.0,<2.0"
+
+[package.extras]
+speedups = ["Brotli", "aiodns", "brotlicffi"]
+
+[[package]]
+name = "aiosignal"
+version = "1.3.1"
+description = "aiosignal: a list of registered asynchronous callbacks"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "aiosignal-1.3.1-py3-none-any.whl", hash = "sha256:f8376fb07dd1e86a584e4fcdec80b36b7f81aac666ebc724e2c090300dd83b17"},
+    {file = "aiosignal-1.3.1.tar.gz", hash = "sha256:54cd96e15e1649b75d6c87526a6ff0b6c1b0dd3459f43d9ca11d48c339b68cfc"},
+]
+
+[package.dependencies]
+frozenlist = ">=1.1.0"
+
 [[package]]
 name = "alabaster"
 version = "0.7.16"
@@ -12,14 +133,13 @@ files = [
 ]
 
 [[package]]
-name = "annotated-types"
-version = "0.6.0"
-description = "Reusable constraint types to use with typing.Annotated"
+name = "antlr4-python3-runtime"
+version = "4.9.3"
+description = "ANTLR 4.9.3 runtime for Python 3.7"
 optional = false
-python-versions = ">=3.8"
+python-versions = "*"
 files = [
-    {file = "annotated_types-0.6.0-py3-none-any.whl", hash = "sha256:0641064de18ba7a25dee8f96403ebc39113d0cb953a01429249d5c7564666a43"},
-    {file = "annotated_types-0.6.0.tar.gz", hash = "sha256:563339e807e53ffd9c267e99fc6d9ea23eb8443c08f112651963e24e22f84a5d"},
+    {file = "antlr4-python3-runtime-4.9.3.tar.gz", hash = "sha256:f224469b4168294902bb1efa80a8bf7855f24c99aef99cbefc1bcd3cce77881b"},
 ]
 
 [[package]]
@@ -55,6 +175,17 @@ doc = ["Sphinx (>=7)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphin
 test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.17)"]
 trio = ["trio (>=0.23)"]
 
+[[package]]
+name = "appdirs"
+version = "1.4.4"
+description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
+optional = false
+python-versions = "*"
+files = [
+    {file = "appdirs-1.4.4-py2.py3-none-any.whl", hash = "sha256:a841dacd6b99318a741b166adb07e19ee71a274450e68237b4650ca1055ab128"},
+    {file = "appdirs-1.4.4.tar.gz", hash = "sha256:7d5d0167b2b1ba821647616af46a749d1c653740dd0d2415100fe26e27afdf41"},
+]
+
 [[package]]
 name = "appnope"
 version = "0.1.4"
@@ -66,6 +197,21 @@ files = [
     {file = "appnope-0.1.4.tar.gz", hash = "sha256:1de3860566df9caf38f01f86f65e0e13e379af54f9e4bee1e66b48f2efffd1ee"},
 ]
 
+[[package]]
+name = "array-api-compat"
+version = "1.4.1"
+description = "A wrapper around NumPy and other array libraries to make them compatible with the Array API standard"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "array_api_compat-1.4.1-py3-none-any.whl", hash = "sha256:dd212f0ed925763e1c3e98d822b80cb57c35ace6692a452430bb2d533e938069"},
+    {file = "array_api_compat-1.4.1.tar.gz", hash = "sha256:053103b7c0ba73626bff7380abf27a29dc80de144394137bc7455b7eba23d8c0"},
+]
+
+[package.extras]
+cupy = ["cupy"]
+numpy = ["numpy"]
+
 [[package]]
 name = "astroid"
 version = "3.0.3"
@@ -98,6 +244,17 @@ six = ">=1.12.0"
 astroid = ["astroid (>=1,<2)", "astroid (>=2,<4)"]
 test = ["astroid (>=1,<2)", "astroid (>=2,<4)", "pytest"]
 
+[[package]]
+name = "async-timeout"
+version = "4.0.3"
+description = "Timeout context manager for asyncio programs"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "async-timeout-4.0.3.tar.gz", hash = "sha256:4640d96be84d82d02ed59ea2b7105a0f7b33abe8703703cd0ab0bf87c427522f"},
+    {file = "async_timeout-4.0.3-py3-none-any.whl", hash = "sha256:7405140ff1230c310e51dc27b3145b9092d659ce68ff733fb0cefe3ee42be028"},
+]
+
 [[package]]
 name = "attrs"
 version = "23.2.0"
@@ -146,6 +303,24 @@ files = [
 [package.extras]
 dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"]
 
+[[package]]
+name = "beartype"
+version = "0.17.2"
+description = "Unbearably fast runtime type checking in pure Python."
+optional = false
+python-versions = ">=3.8.0"
+files = [
+    {file = "beartype-0.17.2-py3-none-any.whl", hash = "sha256:c22b21e1f785cfcf5c4d3d13070f532b6243a3ad67e68d2298ff08d539847dce"},
+    {file = "beartype-0.17.2.tar.gz", hash = "sha256:e911e1ae7de4bccd15745f7643609d8732f64de5c2fb844e89cbbed1c5a8d495"},
+]
+
+[package.extras]
+all = ["typing-extensions (>=3.10.0.0)"]
+dev = ["autoapi (>=0.9.0)", "coverage (>=5.5)", "equinox", "mypy (>=0.800)", "numpy", "pandera", "pydata-sphinx-theme (<=0.7.2)", "pytest (>=4.0.0)", "sphinx", "sphinx (>=4.2.0,<6.0.0)", "sphinxext-opengraph (>=0.7.5)", "tox (>=3.20.1)", "typing-extensions (>=3.10.0.0)"]
+doc-rtd = ["autoapi (>=0.9.0)", "pydata-sphinx-theme (<=0.7.2)", "sphinx (>=4.2.0,<6.0.0)", "sphinxext-opengraph (>=0.7.5)"]
+test-tox = ["equinox", "mypy (>=0.800)", "numpy", "pandera", "pytest (>=4.0.0)", "sphinx", "typing-extensions (>=3.10.0.0)"]
+test-tox-coverage = ["coverage (>=5.5)"]
+
 [[package]]
 name = "beautifulsoup4"
 version = "4.12.3"
@@ -608,6 +783,50 @@ json-validation = ["jsonschema[format] (>=4.18,<5.0)"]
 validation = ["jsonschema[format] (>=4.18,<5.0)", "lxml (>=4,<6)"]
 xml-validation = ["lxml (>=4,<6)"]
 
+[[package]]
+name = "datasets"
+version = "2.17.1"
+description = "HuggingFace community-driven open-source library of datasets"
+optional = false
+python-versions = ">=3.8.0"
+files = [
+    {file = "datasets-2.17.1-py3-none-any.whl", hash = "sha256:346974daf2fe9c14ddb35646896b2308b95e7dc27709d1a6e25273573b140cf8"},
+    {file = "datasets-2.17.1.tar.gz", hash = "sha256:66ec24077807f374f379b62ab0256c4dcb7c38a57ff1529a22993e8d95f2f9f1"},
+]
+
+[package.dependencies]
+aiohttp = "*"
+dill = ">=0.3.0,<0.3.9"
+filelock = "*"
+fsspec = {version = ">=2023.1.0,<=2023.10.0", extras = ["http"]}
+huggingface-hub = ">=0.19.4"
+multiprocess = "*"
+numpy = ">=1.17"
+packaging = "*"
+pandas = "*"
+pyarrow = ">=12.0.0"
+pyarrow-hotfix = "*"
+pyyaml = ">=5.1"
+requests = ">=2.19.0"
+tqdm = ">=4.62.1"
+xxhash = "*"
+
+[package.extras]
+apache-beam = ["apache-beam (>=2.26.0)"]
+audio = ["librosa", "soundfile (>=0.12.1)"]
+benchmarks = ["tensorflow (==2.12.0)", "torch (==2.0.1)", "transformers (==4.30.1)"]
+dev = ["Pillow (>=6.2.1)", "absl-py", "apache-beam (>=2.26.0)", "elasticsearch (<8.0.0)", "faiss-cpu (>=1.6.4)", "jax (>=0.3.14)", "jaxlib (>=0.3.14)", "joblib (<1.3.0)", "joblibspark", "librosa", "lz4", "py7zr", "pyspark (>=3.4)", "pytest", "pytest-datadir", "pytest-xdist", "rarfile (>=4.0)", "ruff (>=0.1.5)", "s3fs", "s3fs (>=2021.11.1)", "soundfile (>=0.12.1)", "sqlalchemy", "tensorflow (>=2.2.0,!=2.6.0,!=2.6.1)", "tensorflow (>=2.3,!=2.6.0,!=2.6.1)", "tensorflow-macos", "tiktoken", "torch", "torch (>=2.0.0)", "transformers", "typing-extensions (>=4.6.1)", "zstandard"]
+docs = ["s3fs", "tensorflow (>=2.2.0,!=2.6.0,!=2.6.1)", "tensorflow-macos", "torch", "transformers"]
+jax = ["jax (>=0.3.14)", "jaxlib (>=0.3.14)"]
+metrics-tests = ["Werkzeug (>=1.0.1)", "accelerate", "bert-score (>=0.3.6)", "jiwer", "langdetect", "mauve-text", "nltk", "requests-file (>=1.5.1)", "rouge-score", "sacrebleu", "sacremoses", "scikit-learn", "scipy", "sentencepiece", "seqeval", "six (>=1.15.0,<1.16.0)", "spacy (>=3.0.0)", "texttable (>=1.6.3)", "tldextract", "tldextract (>=3.1.0)", "toml (>=0.10.1)", "typer (<0.5.0)"]
+quality = ["ruff (>=0.1.5)"]
+s3 = ["s3fs"]
+tensorflow = ["tensorflow (>=2.2.0,!=2.6.0,!=2.6.1)", "tensorflow-macos"]
+tensorflow-gpu = ["tensorflow-gpu (>=2.2.0,!=2.6.0,!=2.6.1)"]
+tests = ["Pillow (>=6.2.1)", "absl-py", "apache-beam (>=2.26.0)", "elasticsearch (<8.0.0)", "faiss-cpu (>=1.6.4)", "jax (>=0.3.14)", "jaxlib (>=0.3.14)", "joblib (<1.3.0)", "joblibspark", "librosa", "lz4", "py7zr", "pyspark (>=3.4)", "pytest", "pytest-datadir", "pytest-xdist", "rarfile (>=4.0)", "s3fs (>=2021.11.1)", "soundfile (>=0.12.1)", "sqlalchemy", "tensorflow (>=2.3,!=2.6.0,!=2.6.1)", "tensorflow-macos", "tiktoken", "torch (>=2.0.0)", "transformers", "typing-extensions (>=4.6.1)", "zstandard"]
+torch = ["torch"]
+vision = ["Pillow (>=6.2.1)"]
+
 [[package]]
 name = "debugpy"
 version = "1.8.1"
@@ -687,6 +906,68 @@ files = [
     {file = "distlib-0.3.8.tar.gz", hash = "sha256:1530ea13e350031b6312d8580ddb6b27a104275a31106523b8f123787f494f64"},
 ]
 
+[[package]]
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+version = "0.1.8"
+description = "Tree is a library for working with nested data structures."
+optional = false
+python-versions = "*"
+files = [
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+    {file = "dm_tree-0.1.8-cp39-cp39-win_amd64.whl", hash = "sha256:8ed3564abed97c806db122c2d3e1a2b64c74a63debe9903aad795167cc301368"},
+]
+
+[[package]]
+name = "docker-pycreds"
+version = "0.4.0"
+description = "Python bindings for the docker credentials store API"
+optional = false
+python-versions = "*"
+files = [
+    {file = "docker-pycreds-0.4.0.tar.gz", hash = "sha256:6ce3270bcaf404cc4c3e27e4b6c70d3521deae82fb508767870fdbf772d584d4"},
+    {file = "docker_pycreds-0.4.0-py2.py3-none-any.whl", hash = "sha256:7266112468627868005106ec19cd0d722702d2b7d5912a28e19b826c3d37af49"},
+]
+
+[package.dependencies]
+six = ">=1.4.0"
+
 [[package]]
 name = "docutils"
 version = "0.20.1"
@@ -698,6 +979,25 @@ files = [
     {file = "docutils-0.20.1.tar.gz", hash = "sha256:f08a4e276c3a1583a86dce3e34aba3fe04d02bba2dd51ed16106244e8a923e3b"},
 ]
 
+[[package]]
+name = "dp-accounting"
+version = "0.4.3"
+description = "Tools for tracking differential privacy budgets"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "dp-accounting-0.4.3.tar.gz", hash = "sha256:bf7ffc4b8048a0bc44c3601a263a23dc6c4c37bed348f1dfe378eb808ceb3419"},
+    {file = "dp_accounting-0.4.3-py3-none-any.whl", hash = "sha256:ef231a18729f8466fe62d6bfae2a243c5ed23e57df8bd84635e041e33f0d74b9"},
+]
+
+[package.dependencies]
+absl-py = ">=1.0,<2.0"
+attrs = ">=22"
+dm-tree = ">=0.1.8,<0.2.0"
+mpmath = ">=1.2,<2.0"
+numpy = ">=1.21,<2.0"
+scipy = ">=1.7,<2.0"
+
 [[package]]
 name = "exceptiongroup"
 version = "1.2.0"
@@ -775,6 +1075,27 @@ docs = ["furo (>=2023.9.10)", "sphinx (>=7.2.6)", "sphinx-autodoc-typehints (>=1
 testing = ["covdefaults (>=2.3)", "coverage (>=7.3.2)", "diff-cover (>=8)", "pytest (>=7.4.3)", "pytest-cov (>=4.1)", "pytest-mock (>=3.12)", "pytest-timeout (>=2.2)"]
 typing = ["typing-extensions (>=4.8)"]
 
+[[package]]
+name = "fl4health"
+version = "0.1.12"
+description = "Federated Learning for Health"
+optional = false
+python-versions = ">=3.9.0,<3.11"
+files = [
+    {file = "fl4health-0.1.12-py3-none-any.whl", hash = "sha256:fa8ea2c73990b7d54b057e3fd90345cdec06df794777c86c629bc590dd551f33"},
+    {file = "fl4health-0.1.12.tar.gz", hash = "sha256:6f777a48fd95b33a4e26409e9337d71294298a4a874872e98937aac5c88690a5"},
+]
+
+[package.dependencies]
+aiohttp = ">=3.9.3,<4.0.0"
+dp-accounting = ">=0.4.3,<0.5.0"
+flwr = "1.4.0"
+numpy = ">=1.24,<2.0"
+opacus = ">=1.3.0,<2.0.0"
+pandas = ">=2.0,<3.0"
+pycyclops = ">=0.2.2,<0.3.0"
+torch = ">=1.12.1,<2.0.0"
+
 [[package]]
 name = "flake8"
 version = "7.0.0"
@@ -791,6 +1112,152 @@ mccabe = ">=0.7.0,<0.8.0"
 pycodestyle = ">=2.11.0,<2.12.0"
 pyflakes = ">=3.2.0,<3.3.0"
 
+[[package]]
+name = "flwr"
+version = "1.4.0"
+description = "Flower: A Friendly Federated Learning Framework"
+optional = false
+python-versions = ">=3.7,<4.0"
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 sphinx = ">=6.0,<8.0"
 sphinx-basic-ng = "*"
 
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+
 [[package]]
 name = "h11"
 version = "0.14.0"
@@ -888,6 +1452,55 @@ files = [
 [package.extras]
 test = ["Cython (>=0.29.24,<0.30.0)"]
 
+[[package]]
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+optional = false
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+
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+omegaconf = ">=2.2,<2.4"
+packaging = "*"
+
 [[package]]
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 version = "2.5.33"
@@ -1024,6 +1637,20 @@ qtconsole = ["qtconsole"]
 test = ["pickleshare", "pytest (<7.1)", "pytest-asyncio (<0.22)", "testpath"]
 test-extra = ["curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.22)", "pandas", "pickleshare", "pytest (<7.1)", "pytest-asyncio (<0.22)", "testpath", "trio"]
 
+[[package]]
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+description = "An ISO 8601 date/time/duration parser and formatter"
+optional = false
+python-versions = "*"
+files = [
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+[package.dependencies]
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+
 [[package]]
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 version = "5.13.2"
@@ -1038,6 +1665,17 @@ files = [
 [package.extras]
 colors = ["colorama (>=0.4.6)"]
 
+[[package]]
+name = "iterators"
+version = "0.0.2"
+description = "Iterator utility classes and functions"
+optional = false
+python-versions = ">=3.6"
+files = [
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+
 [[package]]
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 version = "0.19.1"
@@ -1074,6 +1712,17 @@ MarkupSafe = ">=2.0"
 [package.extras]
 i18n = ["Babel (>=2.7)"]
 
+[[package]]
+name = "joblib"
+version = "1.3.2"
+description = "Lightweight pipelining with Python functions"
+optional = false
+python-versions = ">=3.7"
+files = [
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+
 [[package]]
 name = "jsonschema"
 version = "4.21.1"
@@ -1192,6 +1841,35 @@ test-functional = ["jupytext[test]"]
 test-integration = ["ipykernel", "jupyter-server (!=2.11)", "jupytext[test-functional]", "nbconvert"]
 test-ui = ["calysto-bash"]
 
+[[package]]
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+version = "0.2.1"
+description = "Static image export for web-based visualization libraries with zero dependencies"
+optional = false
+python-versions = "*"
+files = [
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 [[package]]
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 version = "1.8.0"
@@ -1672,6 +2490,51 @@ files = [
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 setuptools = "*"
 
+[[package]]
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 [[package]]
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 version = "1.6.0"
@@ -1695,45 +2558,228 @@ doc = ["matplotlib (>=3.5)", "numpy (>=1.22)", "pydata-sphinx-theme (>=0.13.3)",
 test = ["matplotlib", "pytest", "pytest-cov"]
 
 [[package]]
-name = "packageurl-python"
-version = "0.13.4"
-description = "A purl aka. Package URL parser and builder"
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+version = "11.10.3.66"
+description = "CUBLAS native runtime libraries"
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-python-versions = ">=3.7"
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 files = [
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-[package.extras]
-build = ["setuptools", "wheel"]
-lint = ["black", "isort", "mypy"]
-sqlalchemy = ["sqlalchemy (>=2.0.0)"]
-test = ["pytest"]
+[package.dependencies]
+setuptools = "*"
+wheel = "*"
 
 [[package]]
-name = "packaging"
-version = "23.2"
-description = "Core utilities for Python packages"
+name = "nvidia-cuda-nvrtc-cu11"
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 ]
 
+[package.dependencies]
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+
 [[package]]
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-[[package]]
+[package.dependencies]
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+
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+
+[[package]]
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+description = "Train PyTorch models with Differential Privacy"
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+
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 testing = ["pytest", "pytest-benchmark"]
 
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+    {file = "yarl-1.9.4-py3-none-any.whl", hash = "sha256:928cecb0ef9d5a7946eb6ff58417ad2fe9375762382f1bf5c55e61645f2c43ad"},
+    {file = "yarl-1.9.4.tar.gz", hash = "sha256:566db86717cf8080b99b58b083b773a908ae40f06681e87e589a976faf8246bf"},
+]
+
+[package.dependencies]
+idna = ">=2.0"
+multidict = ">=4.0"
+
 [[package]]
 name = "zipp"
 version = "3.17.0"
@@ -3429,4 +5431,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.9.0,<3.11"
-content-hash = "894868ee05dddb0a66a30981ca7d142b071e6181d8c40d9f0482331b8ba1c0f8"
+content-hash = "628ac8baf69c81be8760631c7a241627e38ff67c82b51403c758aa1f5b479dbe"
diff --git a/pyproject.toml b/pyproject.toml
index 15799b7..c027556 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -17,6 +17,9 @@ classifiers = [
 python = ">=3.9.0,<3.11"
 fastapi = "^0.109.1"
 uvicorn = {version = "^0.23.2", extras = ["standard"]}
+fl4health = "^0.1.11"
+wandb = "^0.16.3"
+torchvision = "0.14.1"
 
 [tool.poetry.group.test]
 optional = true