diff --git a/.buildinfo b/.buildinfo
index 72667a1..0c209b3 100644
--- a/.buildinfo
+++ b/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: eac8c2cecab8f5f0d1617fa75830a8e4
+config: cac6a737651ef2763a249709de69e78f
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/_modules/cycquery/base.html b/_modules/cycquery/base.html
index 99f5d9e..940dd86 100644
--- a/_modules/cycquery/base.html
+++ b/_modules/cycquery/base.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../">
 <head>
@@ -7,6 +13,7 @@
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -24,17 +31,78 @@
     <link rel="search" title="Search" href="../../search.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -42,10 +110,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../intro.html#documentation">📚 Documentation</a></li>
@@ -68,9 +138,21 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
-      <li class="breadcrumb-item active">cycquery.base</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../index.html">Module code</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
       </li>
   </ul>
@@ -397,13 +479,44 @@ <h1>Source code for cycquery.base</h1><div class="highlight"><pre>
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
+  </div>
+
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/_modules/cycquery/eicu.html b/_modules/cycquery/eicu.html
index 8d18757..401cf6d 100644
--- a/_modules/cycquery/eicu.html
+++ b/_modules/cycquery/eicu.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../">
 <head>
@@ -7,6 +13,7 @@
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -24,17 +31,78 @@
     <link rel="search" title="Search" href="../../search.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -42,10 +110,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../intro.html#documentation">📚 Documentation</a></li>
@@ -68,9 +138,21 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
-      <li class="breadcrumb-item active">cycquery.eicu</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../index.html">Module code</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
       </li>
   </ul>
@@ -111,13 +193,44 @@ <h1>Source code for cycquery.eicu</h1><div class="highlight"><pre>
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
+  </div>
+
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/_modules/cycquery/gemini.html b/_modules/cycquery/gemini.html
index 610abe7..fa832d5 100644
--- a/_modules/cycquery/gemini.html
+++ b/_modules/cycquery/gemini.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../">
 <head>
@@ -7,6 +13,7 @@
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -24,17 +31,78 @@
     <link rel="search" title="Search" href="../../search.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -42,10 +110,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../intro.html#documentation">📚 Documentation</a></li>
@@ -68,9 +138,21 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
-      <li class="breadcrumb-item active">cycquery.gemini</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../index.html">Module code</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
       </li>
   </ul>
@@ -328,13 +410,44 @@ <h1>Source code for cycquery.gemini</h1><div class="highlight"><pre>
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
+  </div>
+
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/_modules/cycquery/interface.html b/_modules/cycquery/interface.html
index 9e400af..3a20634 100644
--- a/_modules/cycquery/interface.html
+++ b/_modules/cycquery/interface.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../">
 <head>
@@ -7,6 +13,7 @@
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -24,17 +31,78 @@
     <link rel="search" title="Search" href="../../search.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -42,10 +110,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../intro.html#documentation">📚 Documentation</a></li>
@@ -68,9 +138,21 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
-      <li class="breadcrumb-item active">cycquery.interface</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../index.html">Module code</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
       </li>
   </ul>
@@ -369,13 +451,44 @@ <h1>Source code for cycquery.interface</h1><div class="highlight"><pre>
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
+  </div>
+
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/_modules/cycquery/mimiciii.html b/_modules/cycquery/mimiciii.html
index 097c02b..a4b16af 100644
--- a/_modules/cycquery/mimiciii.html
+++ b/_modules/cycquery/mimiciii.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../">
 <head>
@@ -7,6 +13,7 @@
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -24,17 +31,78 @@
     <link rel="search" title="Search" href="../../search.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -42,10 +110,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../intro.html#documentation">📚 Documentation</a></li>
@@ -68,9 +138,21 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
-      <li class="breadcrumb-item active">cycquery.mimiciii</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../index.html">Module code</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
       </li>
   </ul>
@@ -188,13 +270,44 @@ <h1>Source code for cycquery.mimiciii</h1><div class="highlight"><pre>
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
+  </div>
+
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/_modules/cycquery/mimiciv.html b/_modules/cycquery/mimiciv.html
index d59afbe..6a5f135 100644
--- a/_modules/cycquery/mimiciv.html
+++ b/_modules/cycquery/mimiciv.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../">
 <head>
@@ -7,6 +13,7 @@
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -24,17 +31,78 @@
     <link rel="search" title="Search" href="../../search.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -42,10 +110,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../intro.html#documentation">📚 Documentation</a></li>
@@ -68,9 +138,21 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
-      <li class="breadcrumb-item active">cycquery.mimiciv</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../index.html">Module code</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
       </li>
   </ul>
@@ -265,13 +347,44 @@ <h1>Source code for cycquery.mimiciv</h1><div class="highlight"><pre>
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
+  </div>
+
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/_modules/cycquery/omop.html b/_modules/cycquery/omop.html
index adedb4d..10d38a3 100644
--- a/_modules/cycquery/omop.html
+++ b/_modules/cycquery/omop.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../">
 <head>
@@ -7,6 +13,7 @@
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -24,17 +31,78 @@
     <link rel="search" title="Search" href="../../search.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -42,10 +110,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../intro.html#documentation">📚 Documentation</a></li>
@@ -68,9 +138,21 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
-      <li class="breadcrumb-item active">cycquery.omop</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../index.html">Module code</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
       </li>
   </ul>
@@ -368,13 +450,44 @@ <h1>Source code for cycquery.omop</h1><div class="highlight"><pre>
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
+  </div>
+
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/_modules/cycquery/ops.html b/_modules/cycquery/ops.html
index f595ac8..d1b3827 100644
--- a/_modules/cycquery/ops.html
+++ b/_modules/cycquery/ops.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../">
 <head>
@@ -7,6 +13,7 @@
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -24,17 +31,78 @@
     <link rel="search" title="Search" href="../../search.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -42,10 +110,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../intro.html#documentation">📚 Documentation</a></li>
@@ -68,9 +138,21 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../index.html">Module code</a></li>
-      <li class="breadcrumb-item active">cycquery.ops</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../index.html">Module code</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
       </li>
   </ul>
@@ -3621,13 +3703,44 @@ <h1>Source code for cycquery.ops</h1><div class="highlight"><pre>
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
+  </div>
+
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/_modules/index.html b/_modules/index.html
index 17d6762..f213c2e 100644
--- a/_modules/index.html
+++ b/_modules/index.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../">
 <head>
@@ -7,6 +13,7 @@
     <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -24,17 +31,78 @@
     <link rel="search" title="Search" href="../search.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -42,10 +110,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../intro.html#documentation">📚 Documentation</a></li>
@@ -68,8 +138,19 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
-      <li class="breadcrumb-item active">Overview: module code</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../index.html">cyclops-query</a></li>
+  
+
+  
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
       </li>
   </ul>
@@ -96,13 +177,44 @@ <h1>All modules for which code is available</h1>
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
+  </div>
+
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/_sources/intro.rst.txt b/_sources/intro.rst.txt
index a71062b..c0cb38f 100644
--- a/_sources/intro.rst.txt
+++ b/_sources/intro.rst.txt
@@ -1,5 +1,5 @@
-# cyclops-query
-===============
+cyclops-query
+=============
 
 |PyPI| |code checks| |integration tests| |docs| |codecov| |license|
 
diff --git a/_sources/tutorials.rst.txt b/_sources/tutorials.rst.txt
index 9eb574e..aa91cba 100644
--- a/_sources/tutorials.rst.txt
+++ b/_sources/tutorials.rst.txt
@@ -1,6 +1,16 @@
 Tutorials
 =========
 
+The cyclops-query tool allows you to query EHR databases. It is a Python API that
+that communicates with postgresql databases. It is a wrapper around the
+SQLAlchemy ORM and uses SQLAlchemy query objects and functions to build
+queries.
+
+
 .. toctree::
 
-   tutorials_query
+    tutorials/mimiciii.ipynb
+    tutorials/mimiciv.ipynb
+    tutorials/eicu.ipynb
+    tutorials/omop.ipynb
+    tutorials/gemini.ipynb
diff --git a/_sources/tutorials_query.rst.txt b/_sources/tutorials_query.rst.txt
deleted file mode 100644
index 6f37e08..0000000
--- a/_sources/tutorials_query.rst.txt
+++ /dev/null
@@ -1,16 +0,0 @@
-query API
-=========
-
-The query API allows you to query EHR databases. It is a Python API that
-that communicates with postgresql databases. It is a wrapper around the
-SQLAlchemy ORM and uses SQLAlchemy query objects and functions to build
-queries.
-
-
-.. toctree::
-
-    tutorials/mimiciii.ipynb
-    tutorials/mimiciv.ipynb
-    tutorials/eicu.ipynb
-    tutorials/omop.ipynb
-    tutorials/gemini.ipynb
diff --git a/_static/cyclical_diagram.jpg b/_static/cyclical_diagram.jpg
deleted file mode 100644
index 8aa0d5f..0000000
Binary files a/_static/cyclical_diagram.jpg and /dev/null differ
diff --git a/_static/cyclops_arch.png b/_static/cyclops_arch.png
deleted file mode 100644
index 2e5bd1a..0000000
Binary files a/_static/cyclops_arch.png and /dev/null differ
diff --git a/api.html b/api.html
index 6d1d4a6..ab50668 100644
--- a/api.html
+++ b/api.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="./">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="GEMINI tutorial" href="tutorials/gemini.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="intro.html#documentation">📚 Documentation</a></li>
@@ -74,8 +144,19 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="index.html" class="icon icon-home" aria-label="Home"></a></li>
-      <li class="breadcrumb-item active">API Reference</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="index.html">cyclops-query</a></li>
+  
+
+  
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="_sources/api.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -534,13 +615,44 @@ <h1>API Reference<a class="headerlink" href="#api-reference" title="Link to this
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
+  </div>
+
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/contributing.html b/contributing.html
index d5aa8b1..64faebf 100644
--- a/contributing.html
+++ b/contributing.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="./">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -24,20 +31,81 @@
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
     <link rel="next" title="Tutorials" href="tutorials.html" />
-    <link rel="prev" title="# cyclops-query" href="intro.html" /> 
+    <link rel="prev" title="cyclops-query" href="intro.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="intro.html#documentation">📚 Documentation</a></li>
@@ -75,8 +145,19 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="index.html" class="icon icon-home" aria-label="Home"></a></li>
-      <li class="breadcrumb-item active">Contributing to cyclops-query</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="index.html">cyclops-query</a></li>
+  
+
+  
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="_sources/contributing.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -120,20 +201,51 @@ <h2>Coding guidelines<a class="headerlink" href="#coding-guidelines" title="Link
            </div>
           </div>
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
-        <a href="intro.html" class="btn btn-neutral float-left" title="# cyclops-query" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="intro.html" class="btn btn-neutral float-left" title="cyclops-query" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
         <a href="tutorials.html" class="btn btn-neutral float-right" title="Tutorials" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
     </div>
 
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
+  </div>
+
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/genindex.html b/genindex.html
index 5ec13e4..0beb766 100644
--- a/genindex.html
+++ b/genindex.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="./">
 <head>
@@ -7,6 +13,7 @@
     <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -24,17 +31,78 @@
     <link rel="search" title="Search" href="search.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -42,10 +110,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="intro.html#documentation">📚 Documentation</a></li>
@@ -68,8 +138,19 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="index.html" class="icon icon-home" aria-label="Home"></a></li>
-      <li class="breadcrumb-item active">Index</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="index.html">cyclops-query</a></li>
+  
+
+  
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
       </li>
   </ul>
@@ -681,13 +762,44 @@ <h2 id="V">V</h2>
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/index.html b/index.html
index 6740ed2..5c441b9 100644
--- a/index.html
+++ b/index.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="./">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -23,20 +30,81 @@
     <script src="_static/js/theme.js"></script>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
-    <link rel="next" title="# cyclops-query" href="intro.html" /> 
+    <link rel="next" title="cyclops-query" href="intro.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="#" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="#" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -44,10 +112,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="intro.html#documentation">📚 Documentation</a></li>
@@ -70,8 +140,19 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="#" class="icon icon-home" aria-label="Home"></a></li>
-      <li class="breadcrumb-item active">Welcome to cyclops-query’s documentation!</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="#">cyclops-query</a></li>
+  
+
+  
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="_sources/index.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -86,7 +167,7 @@ <h1>Welcome to cyclops-query’s documentation!<a class="headerlink" href="#welc
 <div class="toctree-wrapper compound">
 <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="intro.html#getting-started">🐣 Getting Started</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="intro.html#installing-cyclops-query-using-pip">Installing cyclops-query using pip</a></li>
 </ul>
@@ -104,7 +185,11 @@ <h1>Welcome to cyclops-query’s documentation!<a class="headerlink" href="#welc
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="tutorials.html">Tutorials</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="tutorials_query.html">query API</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciii.html">MIMIC-III tutorial</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciv.html">MIMIC-IV tutorial</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/eicu.html">eICU-CRD tutorial</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/omop.html">OMOP tutorial</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/gemini.html">GEMINI tutorial</a></li>
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="api.html">API Reference</a><ul>
@@ -119,19 +204,50 @@ <h1>Welcome to cyclops-query’s documentation!<a class="headerlink" href="#welc
            </div>
           </div>
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
-        <a href="intro.html" class="btn btn-neutral float-right" title="# cyclops-query" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+        <a href="intro.html" class="btn btn-neutral float-right" title="cyclops-query" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
     </div>
 
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
+  </div>
+
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/intro.html b/intro.html
index bc973fc..a929c6e 100644
--- a/intro.html
+++ b/intro.html
@@ -1,13 +1,20 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="./">
 <head>
   <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title># cyclops-query &mdash; cyclops-query  documentation</title>
+  <title>cyclops-query &mdash; cyclops-query  documentation</title>
     <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="Welcome to cyclops-query’s documentation!" href="index.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1 current"><a class="current reference internal" href="#"># cyclops-query</a></li>
+<li class="toctree-l1 current"><a class="current reference internal" href="#">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="#getting-started">🐣 Getting Started</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="#installing-cyclops-query-using-pip">Installing cyclops-query using pip</a></li>
 </ul>
@@ -78,8 +148,19 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="index.html" class="icon icon-home" aria-label="Home"></a></li>
-      <li class="breadcrumb-item active"># cyclops-query</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="index.html">cyclops-query</a></li>
+  
+
+  
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="_sources/intro.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -90,7 +171,7 @@
            <div itemprop="articleBody">
              
   <section id="cyclops-query">
-<h1># cyclops-query<a class="headerlink" href="#cyclops-query" title="Link to this heading"></a></h1>
+<h1>cyclops-query<a class="headerlink" href="#cyclops-query" title="Link to this heading"></a></h1>
 <p><a class="reference external" href="https://pypi.org/project/cycquery"><img alt="PyPI" src="https://img.shields.io/pypi/v/cycquery" /></a> <a class="reference external" href="https://github.com/VectorInstitute/cyclops-query/actions/workflows/code_checks.yml"><img alt="code checks" src="https://github.com/VectorInstitute/cyclops-query/actions/workflows/code_checks.yml/badge.svg" /></a> <a class="reference external" href="https://github.com/VectorInstitute/cyclops-query/actions/workflows/integration_tests.yml"><img alt="integration tests" src="https://github.com/VectorInstitute/cyclops-query/actions/workflows/integration_tests.yml/badge.svg" /></a> <a class="reference external" href="https://github.com/VectorInstitute/cyclops-query/actions/workflows/docs_deploy.yml"><img alt="docs" src="https://github.com/VectorInstitute/cyclops-query/actions/workflows/docs_deploy.yml/badge.svg" /></a> <a class="reference external" href="https://codecov.io/gh/VectorInstitute/cyclops-query"><img alt="codecov" src="https://codecov.io/gh/VectorInstitute/cyclops-query/branch/main/graph/badge.svg" /></a> <a class="reference external" href="https://github.com/VectorInstitute/cyclops-query/blob/main/LICENSE"><img alt="license" src="https://img.shields.io/github/license/VectorInstitute/cyclops-query.svg" /></a></p>
 <p><code class="docutils literal notranslate"><span class="pre">cyclops-query</span></code> is a tool for querying EHR databases.</p>
 </section>
@@ -161,13 +242,44 @@ <h1>🎓 Citation<a class="headerlink" href="#citation" title="Link to this head
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
+  </div>
+
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/objects.inv b/objects.inv
index 64383ef..5865e8e 100644
Binary files a/objects.inv and b/objects.inv differ
diff --git a/py-modindex.html b/py-modindex.html
index eb5226c..31f16d2 100644
--- a/py-modindex.html
+++ b/py-modindex.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="./">
 <head>
@@ -7,6 +13,7 @@
     <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="intro.html#documentation">📚 Documentation</a></li>
@@ -71,8 +141,19 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="index.html" class="icon icon-home" aria-label="Home"></a></li>
-      <li class="breadcrumb-item active">Python Module Index</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="index.html">cyclops-query</a></li>
+  
+
+  
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
       </li>
   </ul>
@@ -148,13 +229,44 @@ <h1>Python Module Index</h1>
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
+  </div>
+
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.base.DatasetQuerier.html b/reference/api/_autosummary/cycquery.base.DatasetQuerier.html
index 54a6b8a..c9eaae7 100644
--- a/reference/api/_autosummary/cycquery.base.DatasetQuerier.html
+++ b/reference/api/_autosummary/cycquery.base.DatasetQuerier.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.base" href="cycquery.base.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -83,11 +153,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.base.html">cycquery.base</a></li>
-      <li class="breadcrumb-item active">cycquery.base.DatasetQuerier</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.base.html">cycquery.base</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.base.DatasetQuerier.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -252,13 +336,44 @@ <h1>cycquery.base.DatasetQuerier<a class="headerlink" href="#cycquery-base-datas
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.base.html b/reference/api/_autosummary/cycquery.base.html
index bcb7483..977880c 100644
--- a/reference/api/_autosummary/cycquery.base.html
+++ b/reference/api/_autosummary/cycquery.base.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.Union" href="cycquery.ops.Union.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -83,10 +153,23 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-      <li class="breadcrumb-item active">cycquery.base</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.base.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -120,13 +203,44 @@
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
+  </div>
+
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.eicu.EICUQuerier.html b/reference/api/_autosummary/cycquery.eicu.EICUQuerier.html
index 2afa545..bec9543 100644
--- a/reference/api/_autosummary/cycquery.eicu.EICUQuerier.html
+++ b/reference/api/_autosummary/cycquery.eicu.EICUQuerier.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.eicu" href="cycquery.eicu.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -87,11 +157,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.eicu.html">cycquery.eicu</a></li>
-      <li class="breadcrumb-item active">cycquery.eicu.EICUQuerier</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.eicu.html">cycquery.eicu</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.eicu.EICUQuerier.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -231,13 +315,44 @@ <h1>cycquery.eicu.EICUQuerier<a class="headerlink" href="#cycquery-eicu-eicuquer
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.eicu.html b/reference/api/_autosummary/cycquery.eicu.html
index e90df96..6593265 100644
--- a/reference/api/_autosummary/cycquery.eicu.html
+++ b/reference/api/_autosummary/cycquery.eicu.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.mimiciv.MIMICIVQuerier" href="cycquery.mimiciv.MIMICIVQuerier.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -87,10 +157,23 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-      <li class="breadcrumb-item active">cycquery.eicu</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.eicu.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -125,13 +208,44 @@
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
+  </div>
+
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.gemini.GEMINIQuerier.html b/reference/api/_autosummary/cycquery.gemini.GEMINIQuerier.html
index 91d2e81..73651f4 100644
--- a/reference/api/_autosummary/cycquery.gemini.GEMINIQuerier.html
+++ b/reference/api/_autosummary/cycquery.gemini.GEMINIQuerier.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -26,17 +33,78 @@
     <link rel="prev" title="cycquery.gemini" href="cycquery.gemini.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -44,10 +112,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -86,11 +156,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.gemini.html">cycquery.gemini</a></li>
-      <li class="breadcrumb-item active">cycquery.gemini.GEMINIQuerier</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.gemini.html">cycquery.gemini</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.gemini.GEMINIQuerier.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -314,13 +398,44 @@ <h1>cycquery.gemini.GEMINIQuerier<a class="headerlink" href="#cycquery-gemini-ge
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.gemini.html b/reference/api/_autosummary/cycquery.gemini.html
index 637a0aa..cfe2f8a 100644
--- a/reference/api/_autosummary/cycquery.gemini.html
+++ b/reference/api/_autosummary/cycquery.gemini.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.omop.OMOPQuerier" href="cycquery.omop.OMOPQuerier.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -87,10 +157,23 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-      <li class="breadcrumb-item active">cycquery.gemini</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.gemini.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -124,13 +207,44 @@
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
+  </div>
+
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.interface.QueryInterface.html b/reference/api/_autosummary/cycquery.interface.QueryInterface.html
index d458484..c02e3c6 100644
--- a/reference/api/_autosummary/cycquery.interface.QueryInterface.html
+++ b/reference/api/_autosummary/cycquery.interface.QueryInterface.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.interface" href="cycquery.interface.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -83,11 +153,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.interface.html">cycquery.interface</a></li>
-      <li class="breadcrumb-item active">cycquery.interface.QueryInterface</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.interface.html">cycquery.interface</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.interface.QueryInterface.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -305,13 +389,44 @@ <h1>cycquery.interface.QueryInterface<a class="headerlink" href="#cycquery-inter
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.interface.html b/reference/api/_autosummary/cycquery.interface.html
index f037b4c..7abd73d 100644
--- a/reference/api/_autosummary/cycquery.interface.html
+++ b/reference/api/_autosummary/cycquery.interface.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery" href="../cycquery.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -83,10 +153,23 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-      <li class="breadcrumb-item active">cycquery.interface</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.interface.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -120,13 +203,44 @@
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
+  </div>
+
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.mimiciii.MIMICIIIQuerier.html b/reference/api/_autosummary/cycquery.mimiciii.MIMICIIIQuerier.html
index d0fa456..693fc8e 100644
--- a/reference/api/_autosummary/cycquery.mimiciii.MIMICIIIQuerier.html
+++ b/reference/api/_autosummary/cycquery.mimiciii.MIMICIIIQuerier.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.mimiciii" href="cycquery.mimiciii.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -87,11 +157,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.mimiciii.html">cycquery.mimiciii</a></li>
-      <li class="breadcrumb-item active">cycquery.mimiciii.MIMICIIIQuerier</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.mimiciii.html">cycquery.mimiciii</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.mimiciii.MIMICIIIQuerier.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -282,13 +366,44 @@ <h1>cycquery.mimiciii.MIMICIIIQuerier<a class="headerlink" href="#cycquery-mimic
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.mimiciii.html b/reference/api/_autosummary/cycquery.mimiciii.html
index 9467642..6cd5d01 100644
--- a/reference/api/_autosummary/cycquery.mimiciii.html
+++ b/reference/api/_autosummary/cycquery.mimiciii.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.base.DatasetQuerier" href="cycquery.base.DatasetQuerier.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -87,10 +157,23 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-      <li class="breadcrumb-item active">cycquery.mimiciii</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.mimiciii.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -125,13 +208,44 @@
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
+  </div>
+
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.mimiciv.MIMICIVQuerier.html b/reference/api/_autosummary/cycquery.mimiciv.MIMICIVQuerier.html
index 9f87db0..0723e6b 100644
--- a/reference/api/_autosummary/cycquery.mimiciv.MIMICIVQuerier.html
+++ b/reference/api/_autosummary/cycquery.mimiciv.MIMICIVQuerier.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.mimiciv" href="cycquery.mimiciv.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -87,11 +157,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.mimiciv.html">cycquery.mimiciv</a></li>
-      <li class="breadcrumb-item active">cycquery.mimiciv.MIMICIVQuerier</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.mimiciv.html">cycquery.mimiciv</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.mimiciv.MIMICIVQuerier.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -310,13 +394,44 @@ <h1>cycquery.mimiciv.MIMICIVQuerier<a class="headerlink" href="#cycquery-mimiciv
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.mimiciv.html b/reference/api/_autosummary/cycquery.mimiciv.html
index e5d483c..c5b887c 100644
--- a/reference/api/_autosummary/cycquery.mimiciv.html
+++ b/reference/api/_autosummary/cycquery.mimiciv.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.mimiciii.MIMICIIIQuerier" href="cycquery.mimiciii.MIMICIIIQuerier.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -87,10 +157,23 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-      <li class="breadcrumb-item active">cycquery.mimiciv</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.mimiciv.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -125,13 +208,44 @@
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
+  </div>
+
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.omop.OMOPQuerier.html b/reference/api/_autosummary/cycquery.omop.OMOPQuerier.html
index 9f45960..ecfc83e 100644
--- a/reference/api/_autosummary/cycquery.omop.OMOPQuerier.html
+++ b/reference/api/_autosummary/cycquery.omop.OMOPQuerier.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.omop" href="cycquery.omop.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -87,11 +157,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.omop.html">cycquery.omop</a></li>
-      <li class="breadcrumb-item active">cycquery.omop.OMOPQuerier</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.omop.html">cycquery.omop</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.omop.OMOPQuerier.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -344,13 +428,44 @@ <h1>cycquery.omop.OMOPQuerier<a class="headerlink" href="#cycquery-omop-omopquer
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.omop.html b/reference/api/_autosummary/cycquery.omop.html
index 6610783..e27359a 100644
--- a/reference/api/_autosummary/cycquery.omop.html
+++ b/reference/api/_autosummary/cycquery.omop.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.eicu.EICUQuerier" href="cycquery.eicu.EICUQuerier.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -87,10 +157,23 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-      <li class="breadcrumb-item active">cycquery.omop</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.omop.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -124,13 +207,44 @@
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
+  </div>
+
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.AddColumn.html b/reference/api/_autosummary/cycquery.ops.AddColumn.html
index d2b1667..40bbd9c 100644
--- a/reference/api/_autosummary/cycquery.ops.AddColumn.html
+++ b/reference/api/_autosummary/cycquery.ops.AddColumn.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops" href="cycquery.ops.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.AddColumn</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.AddColumn.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -206,13 +290,44 @@ <h1>cycquery.ops.AddColumn<a class="headerlink" href="#cycquery-ops-addcolumn" t
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.AddDeltaColumn.html b/reference/api/_autosummary/cycquery.ops.AddDeltaColumn.html
index 5ba366a..8614a1d 100644
--- a/reference/api/_autosummary/cycquery.ops.AddDeltaColumn.html
+++ b/reference/api/_autosummary/cycquery.ops.AddDeltaColumn.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.AddColumn" href="cycquery.ops.AddColumn.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.AddDeltaColumn</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.AddDeltaColumn.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -200,13 +284,44 @@ <h1>cycquery.ops.AddDeltaColumn<a class="headerlink" href="#cycquery-ops-adddelt
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.AddDeltaConstant.html b/reference/api/_autosummary/cycquery.ops.AddDeltaConstant.html
index 0b6c9e5..fb97f52 100644
--- a/reference/api/_autosummary/cycquery.ops.AddDeltaConstant.html
+++ b/reference/api/_autosummary/cycquery.ops.AddDeltaConstant.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.AddDeltaColumn" href="cycquery.ops.AddDeltaColumn.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.AddDeltaConstant</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.AddDeltaConstant.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -198,13 +282,44 @@ <h1>cycquery.ops.AddDeltaConstant<a class="headerlink" href="#cycquery-ops-addde
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.AddNumeric.html b/reference/api/_autosummary/cycquery.ops.AddNumeric.html
index ec2c509..29f1aec 100644
--- a/reference/api/_autosummary/cycquery.ops.AddNumeric.html
+++ b/reference/api/_autosummary/cycquery.ops.AddNumeric.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.AddDeltaConstant" href="cycquery.ops.AddDeltaConstant.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.AddNumeric</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.AddNumeric.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -200,13 +284,44 @@ <h1>cycquery.ops.AddNumeric<a class="headerlink" href="#cycquery-ops-addnumeric"
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.And.html b/reference/api/_autosummary/cycquery.ops.And.html
index 4b3ad1a..99f4309 100644
--- a/reference/api/_autosummary/cycquery.ops.And.html
+++ b/reference/api/_autosummary/cycquery.ops.And.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.AddNumeric" href="cycquery.ops.AddNumeric.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.And</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.And.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -195,13 +279,44 @@ <h1>cycquery.ops.And<a class="headerlink" href="#cycquery-ops-and" title="Link t
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.Apply.html b/reference/api/_autosummary/cycquery.ops.Apply.html
index 91f156b..1096041 100644
--- a/reference/api/_autosummary/cycquery.ops.Apply.html
+++ b/reference/api/_autosummary/cycquery.ops.Apply.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.And" href="cycquery.ops.And.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.Apply</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.Apply.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -204,13 +288,44 @@ <h1>cycquery.ops.Apply<a class="headerlink" href="#cycquery-ops-apply" title="Li
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.Cast.html b/reference/api/_autosummary/cycquery.ops.Cast.html
index 83610af..43fac4f 100644
--- a/reference/api/_autosummary/cycquery.ops.Cast.html
+++ b/reference/api/_autosummary/cycquery.ops.Cast.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.Apply" href="cycquery.ops.Apply.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.Cast</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.Cast.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -200,13 +284,44 @@ <h1>cycquery.ops.Cast<a class="headerlink" href="#cycquery-ops-cast" title="Link
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.ConditionAfterDate.html b/reference/api/_autosummary/cycquery.ops.ConditionAfterDate.html
index 93b233a..2d3b7fa 100644
--- a/reference/api/_autosummary/cycquery.ops.ConditionAfterDate.html
+++ b/reference/api/_autosummary/cycquery.ops.ConditionAfterDate.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.Cast" href="cycquery.ops.Cast.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.ConditionAfterDate</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.ConditionAfterDate.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -201,13 +285,44 @@ <h1>cycquery.ops.ConditionAfterDate<a class="headerlink" href="#cycquery-ops-con
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.ConditionBeforeDate.html b/reference/api/_autosummary/cycquery.ops.ConditionBeforeDate.html
index ddc6e66..5d7d020 100644
--- a/reference/api/_autosummary/cycquery.ops.ConditionBeforeDate.html
+++ b/reference/api/_autosummary/cycquery.ops.ConditionBeforeDate.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.ConditionAfterDate" href="cycquery.ops.ConditionAfterDate.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.ConditionBeforeDate</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.ConditionBeforeDate.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -201,13 +285,44 @@ <h1>cycquery.ops.ConditionBeforeDate<a class="headerlink" href="#cycquery-ops-co
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.ConditionEndsWith.html b/reference/api/_autosummary/cycquery.ops.ConditionEndsWith.html
index 2930d23..811f131 100644
--- a/reference/api/_autosummary/cycquery.ops.ConditionEndsWith.html
+++ b/reference/api/_autosummary/cycquery.ops.ConditionEndsWith.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.ConditionBeforeDate" href="cycquery.ops.ConditionBeforeDate.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.ConditionEndsWith</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.ConditionEndsWith.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -201,13 +285,44 @@ <h1>cycquery.ops.ConditionEndsWith<a class="headerlink" href="#cycquery-ops-cond
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.ConditionEquals.html b/reference/api/_autosummary/cycquery.ops.ConditionEquals.html
index f49dc88..2da7b8d 100644
--- a/reference/api/_autosummary/cycquery.ops.ConditionEquals.html
+++ b/reference/api/_autosummary/cycquery.ops.ConditionEquals.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.ConditionEndsWith" href="cycquery.ops.ConditionEndsWith.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.ConditionEquals</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.ConditionEquals.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -201,13 +285,44 @@ <h1>cycquery.ops.ConditionEquals<a class="headerlink" href="#cycquery-ops-condit
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.ConditionGreaterThan.html b/reference/api/_autosummary/cycquery.ops.ConditionGreaterThan.html
index b079725..789b59d 100644
--- a/reference/api/_autosummary/cycquery.ops.ConditionGreaterThan.html
+++ b/reference/api/_autosummary/cycquery.ops.ConditionGreaterThan.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.ConditionEquals" href="cycquery.ops.ConditionEquals.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.ConditionGreaterThan</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.ConditionGreaterThan.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -202,13 +286,44 @@ <h1>cycquery.ops.ConditionGreaterThan<a class="headerlink" href="#cycquery-ops-c
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.ConditionIn.html b/reference/api/_autosummary/cycquery.ops.ConditionIn.html
index 3b09119..8c94fbd 100644
--- a/reference/api/_autosummary/cycquery.ops.ConditionIn.html
+++ b/reference/api/_autosummary/cycquery.ops.ConditionIn.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.ConditionGreaterThan" href="cycquery.ops.ConditionGreaterThan.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.ConditionIn</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.ConditionIn.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -201,13 +285,44 @@ <h1>cycquery.ops.ConditionIn<a class="headerlink" href="#cycquery-ops-conditioni
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.ConditionInMonths.html b/reference/api/_autosummary/cycquery.ops.ConditionInMonths.html
index 835a92f..c2c1424 100644
--- a/reference/api/_autosummary/cycquery.ops.ConditionInMonths.html
+++ b/reference/api/_autosummary/cycquery.ops.ConditionInMonths.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.ConditionIn" href="cycquery.ops.ConditionIn.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.ConditionInMonths</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.ConditionInMonths.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -201,13 +285,44 @@ <h1>cycquery.ops.ConditionInMonths<a class="headerlink" href="#cycquery-ops-cond
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.ConditionInYears.html b/reference/api/_autosummary/cycquery.ops.ConditionInYears.html
index 7de473d..67cf936 100644
--- a/reference/api/_autosummary/cycquery.ops.ConditionInYears.html
+++ b/reference/api/_autosummary/cycquery.ops.ConditionInYears.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.ConditionInMonths" href="cycquery.ops.ConditionInMonths.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.ConditionInYears</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.ConditionInYears.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -201,13 +285,44 @@ <h1>cycquery.ops.ConditionInYears<a class="headerlink" href="#cycquery-ops-condi
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.ConditionLessThan.html b/reference/api/_autosummary/cycquery.ops.ConditionLessThan.html
index 7cd537d..b2bac35 100644
--- a/reference/api/_autosummary/cycquery.ops.ConditionLessThan.html
+++ b/reference/api/_autosummary/cycquery.ops.ConditionLessThan.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.ConditionInYears" href="cycquery.ops.ConditionInYears.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.ConditionLessThan</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.ConditionLessThan.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -202,13 +286,44 @@ <h1>cycquery.ops.ConditionLessThan<a class="headerlink" href="#cycquery-ops-cond
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.ConditionLike.html b/reference/api/_autosummary/cycquery.ops.ConditionLike.html
index aac5de1..7d9ab96 100644
--- a/reference/api/_autosummary/cycquery.ops.ConditionLike.html
+++ b/reference/api/_autosummary/cycquery.ops.ConditionLike.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.ConditionLessThan" href="cycquery.ops.ConditionLessThan.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.ConditionLike</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.ConditionLike.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -201,13 +285,44 @@ <h1>cycquery.ops.ConditionLike<a class="headerlink" href="#cycquery-ops-conditio
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.ConditionRegexMatch.html b/reference/api/_autosummary/cycquery.ops.ConditionRegexMatch.html
index fda1efd..5afc093 100644
--- a/reference/api/_autosummary/cycquery.ops.ConditionRegexMatch.html
+++ b/reference/api/_autosummary/cycquery.ops.ConditionRegexMatch.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.ConditionLike" href="cycquery.ops.ConditionLike.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.ConditionRegexMatch</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.ConditionRegexMatch.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -200,13 +284,44 @@ <h1>cycquery.ops.ConditionRegexMatch<a class="headerlink" href="#cycquery-ops-co
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.ConditionStartsWith.html b/reference/api/_autosummary/cycquery.ops.ConditionStartsWith.html
index 5c09a9d..c5b8555 100644
--- a/reference/api/_autosummary/cycquery.ops.ConditionStartsWith.html
+++ b/reference/api/_autosummary/cycquery.ops.ConditionStartsWith.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.ConditionRegexMatch" href="cycquery.ops.ConditionRegexMatch.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.ConditionStartsWith</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.ConditionStartsWith.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -201,13 +285,44 @@ <h1>cycquery.ops.ConditionStartsWith<a class="headerlink" href="#cycquery-ops-co
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.ConditionSubstring.html b/reference/api/_autosummary/cycquery.ops.ConditionSubstring.html
index 051d23b..68b739f 100644
--- a/reference/api/_autosummary/cycquery.ops.ConditionSubstring.html
+++ b/reference/api/_autosummary/cycquery.ops.ConditionSubstring.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.ConditionStartsWith" href="cycquery.ops.ConditionStartsWith.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.ConditionSubstring</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.ConditionSubstring.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -206,13 +290,44 @@ <h1>cycquery.ops.ConditionSubstring<a class="headerlink" href="#cycquery-ops-con
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.Distinct.html b/reference/api/_autosummary/cycquery.ops.Distinct.html
index a6c6c1b..95b5b16 100644
--- a/reference/api/_autosummary/cycquery.ops.Distinct.html
+++ b/reference/api/_autosummary/cycquery.ops.Distinct.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.ConditionSubstring" href="cycquery.ops.ConditionSubstring.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.Distinct</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.Distinct.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -192,13 +276,44 @@ <h1>cycquery.ops.Distinct<a class="headerlink" href="#cycquery-ops-distinct" tit
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.Drop.html b/reference/api/_autosummary/cycquery.ops.Drop.html
index 4c88d68..3f5b742 100644
--- a/reference/api/_autosummary/cycquery.ops.Drop.html
+++ b/reference/api/_autosummary/cycquery.ops.Drop.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.Distinct" href="cycquery.ops.Distinct.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.Drop</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.Drop.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -192,13 +276,44 @@ <h1>cycquery.ops.Drop<a class="headerlink" href="#cycquery-ops-drop" title="Link
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.DropEmpty.html b/reference/api/_autosummary/cycquery.ops.DropEmpty.html
index a9acaa2..763228c 100644
--- a/reference/api/_autosummary/cycquery.ops.DropEmpty.html
+++ b/reference/api/_autosummary/cycquery.ops.DropEmpty.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.Drop" href="cycquery.ops.Drop.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.DropEmpty</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.DropEmpty.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -192,13 +276,44 @@ <h1>cycquery.ops.DropEmpty<a class="headerlink" href="#cycquery-ops-dropempty" t
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.DropNulls.html b/reference/api/_autosummary/cycquery.ops.DropNulls.html
index 7b668c8..390283b 100644
--- a/reference/api/_autosummary/cycquery.ops.DropNulls.html
+++ b/reference/api/_autosummary/cycquery.ops.DropNulls.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.DropEmpty" href="cycquery.ops.DropEmpty.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.DropNulls</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.DropNulls.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -192,13 +276,44 @@ <h1>cycquery.ops.DropNulls<a class="headerlink" href="#cycquery-ops-dropnulls" t
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.ExtractTimestampComponent.html b/reference/api/_autosummary/cycquery.ops.ExtractTimestampComponent.html
index 99da14c..2eeacc7 100644
--- a/reference/api/_autosummary/cycquery.ops.ExtractTimestampComponent.html
+++ b/reference/api/_autosummary/cycquery.ops.ExtractTimestampComponent.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.DropNulls" href="cycquery.ops.DropNulls.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.ExtractTimestampComponent</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.ExtractTimestampComponent.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -196,13 +280,44 @@ <h1>cycquery.ops.ExtractTimestampComponent<a class="headerlink" href="#cycquery-
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.FillNull.html b/reference/api/_autosummary/cycquery.ops.FillNull.html
index 2f7e883..07d731f 100644
--- a/reference/api/_autosummary/cycquery.ops.FillNull.html
+++ b/reference/api/_autosummary/cycquery.ops.FillNull.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.ExtractTimestampComponent" href="cycquery.ops.ExtractTimestampComponent.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.FillNull</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.FillNull.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -197,13 +281,44 @@ <h1>cycquery.ops.FillNull<a class="headerlink" href="#cycquery-ops-fillnull" tit
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.GroupByAggregate.html b/reference/api/_autosummary/cycquery.ops.GroupByAggregate.html
index 280ffc0..5b18f43 100644
--- a/reference/api/_autosummary/cycquery.ops.GroupByAggregate.html
+++ b/reference/api/_autosummary/cycquery.ops.GroupByAggregate.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.FillNull" href="cycquery.ops.FillNull.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.GroupByAggregate</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.GroupByAggregate.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -205,13 +289,44 @@ <h1>cycquery.ops.GroupByAggregate<a class="headerlink" href="#cycquery-ops-group
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.Join.html b/reference/api/_autosummary/cycquery.ops.Join.html
index 545e648..d06009d 100644
--- a/reference/api/_autosummary/cycquery.ops.Join.html
+++ b/reference/api/_autosummary/cycquery.ops.Join.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.GroupByAggregate" href="cycquery.ops.GroupByAggregate.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.Join</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.Join.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -211,13 +295,44 @@ <h1>cycquery.ops.Join<a class="headerlink" href="#cycquery-ops-join" title="Link
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.Keep.html b/reference/api/_autosummary/cycquery.ops.Keep.html
index 9b7dfa3..d8e84bb 100644
--- a/reference/api/_autosummary/cycquery.ops.Keep.html
+++ b/reference/api/_autosummary/cycquery.ops.Keep.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.Join" href="cycquery.ops.Join.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.Keep</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.Keep.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -192,13 +276,44 @@ <h1>cycquery.ops.Keep<a class="headerlink" href="#cycquery-ops-keep" title="Link
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.Limit.html b/reference/api/_autosummary/cycquery.ops.Limit.html
index 25a3b3d..fc6c635 100644
--- a/reference/api/_autosummary/cycquery.ops.Limit.html
+++ b/reference/api/_autosummary/cycquery.ops.Limit.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.Keep" href="cycquery.ops.Keep.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.Limit</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.Limit.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -191,13 +275,44 @@ <h1>cycquery.ops.Limit<a class="headerlink" href="#cycquery-ops-limit" title="Li
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.Literal.html b/reference/api/_autosummary/cycquery.ops.Literal.html
index db86317..f18d68d 100644
--- a/reference/api/_autosummary/cycquery.ops.Literal.html
+++ b/reference/api/_autosummary/cycquery.ops.Literal.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.Limit" href="cycquery.ops.Limit.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.Literal</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.Literal.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -194,13 +278,44 @@ <h1>cycquery.ops.Literal<a class="headerlink" href="#cycquery-ops-literal" title
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.Or.html b/reference/api/_autosummary/cycquery.ops.Or.html
index 5660692..20a3796 100644
--- a/reference/api/_autosummary/cycquery.ops.Or.html
+++ b/reference/api/_autosummary/cycquery.ops.Or.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.Literal" href="cycquery.ops.Literal.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.Or</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.Or.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -195,13 +279,44 @@ <h1>cycquery.ops.Or<a class="headerlink" href="#cycquery-ops-or" title="Link to
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.OrderBy.html b/reference/api/_autosummary/cycquery.ops.OrderBy.html
index a85a171..cde4e15 100644
--- a/reference/api/_autosummary/cycquery.ops.OrderBy.html
+++ b/reference/api/_autosummary/cycquery.ops.OrderBy.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.Or" href="cycquery.ops.Or.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.OrderBy</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.OrderBy.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -198,13 +282,44 @@ <h1>cycquery.ops.OrderBy<a class="headerlink" href="#cycquery-ops-orderby" title
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.QueryOp.html b/reference/api/_autosummary/cycquery.ops.QueryOp.html
index e2d1557..3830604 100644
--- a/reference/api/_autosummary/cycquery.ops.QueryOp.html
+++ b/reference/api/_autosummary/cycquery.ops.QueryOp.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.OrderBy" href="cycquery.ops.OrderBy.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.QueryOp</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.QueryOp.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -176,13 +260,44 @@ <h1>cycquery.ops.QueryOp<a class="headerlink" href="#cycquery-ops-queryop" title
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.RandomizeOrder.html b/reference/api/_autosummary/cycquery.ops.RandomizeOrder.html
index a16303c..96f063b 100644
--- a/reference/api/_autosummary/cycquery.ops.RandomizeOrder.html
+++ b/reference/api/_autosummary/cycquery.ops.RandomizeOrder.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.QueryOp" href="cycquery.ops.QueryOp.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.RandomizeOrder</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.RandomizeOrder.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -192,13 +276,44 @@ <h1>cycquery.ops.RandomizeOrder<a class="headerlink" href="#cycquery-ops-randomi
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.Rename.html b/reference/api/_autosummary/cycquery.ops.Rename.html
index 57632a6..f755845 100644
--- a/reference/api/_autosummary/cycquery.ops.Rename.html
+++ b/reference/api/_autosummary/cycquery.ops.Rename.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.RandomizeOrder" href="cycquery.ops.RandomizeOrder.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.Rename</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.Rename.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -194,13 +278,44 @@ <h1>cycquery.ops.Rename<a class="headerlink" href="#cycquery-ops-rename" title="
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.Reorder.html b/reference/api/_autosummary/cycquery.ops.Reorder.html
index aa534be..2a244d4 100644
--- a/reference/api/_autosummary/cycquery.ops.Reorder.html
+++ b/reference/api/_autosummary/cycquery.ops.Reorder.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.Rename" href="cycquery.ops.Rename.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.Reorder</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.Reorder.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -191,13 +275,44 @@ <h1>cycquery.ops.Reorder<a class="headerlink" href="#cycquery-ops-reorder" title
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.ReorderAfter.html b/reference/api/_autosummary/cycquery.ops.ReorderAfter.html
index 2f5db3e..8f656b3 100644
--- a/reference/api/_autosummary/cycquery.ops.ReorderAfter.html
+++ b/reference/api/_autosummary/cycquery.ops.ReorderAfter.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.Reorder" href="cycquery.ops.Reorder.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.ReorderAfter</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.ReorderAfter.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -194,13 +278,44 @@ <h1>cycquery.ops.ReorderAfter<a class="headerlink" href="#cycquery-ops-reorderaf
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.Sequential.html b/reference/api/_autosummary/cycquery.ops.Sequential.html
index 0086828..6fead11 100644
--- a/reference/api/_autosummary/cycquery.ops.Sequential.html
+++ b/reference/api/_autosummary/cycquery.ops.Sequential.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.ReorderAfter" href="cycquery.ops.ReorderAfter.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.Sequential</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.Sequential.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -309,13 +393,44 @@ <h1>cycquery.ops.Sequential<a class="headerlink" href="#cycquery-ops-sequential"
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.Substring.html b/reference/api/_autosummary/cycquery.ops.Substring.html
index 4bd0ced..bba8071 100644
--- a/reference/api/_autosummary/cycquery.ops.Substring.html
+++ b/reference/api/_autosummary/cycquery.ops.Substring.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.Sequential" href="cycquery.ops.Sequential.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.Substring</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.Substring.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -197,13 +281,44 @@ <h1>cycquery.ops.Substring<a class="headerlink" href="#cycquery-ops-substring" t
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.Trim.html b/reference/api/_autosummary/cycquery.ops.Trim.html
index 9cf1f7e..cefe0dd 100644
--- a/reference/api/_autosummary/cycquery.ops.Trim.html
+++ b/reference/api/_autosummary/cycquery.ops.Trim.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.Substring" href="cycquery.ops.Substring.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.Trim</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.Trim.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -198,13 +282,44 @@ <h1>cycquery.ops.Trim<a class="headerlink" href="#cycquery-ops-trim" title="Link
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.Union.html b/reference/api/_autosummary/cycquery.ops.Union.html
index 644f3e7..bd8160d 100644
--- a/reference/api/_autosummary/cycquery.ops.Union.html
+++ b/reference/api/_autosummary/cycquery.ops.Union.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.ops.Trim" href="cycquery.ops.Trim.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,11 +194,25 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-          <li class="breadcrumb-item"><a href="cycquery.ops.html">cycquery.ops</a></li>
-      <li class="breadcrumb-item active">cycquery.ops.Union</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+    <li><a href="cycquery.ops.html">cycquery.ops</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.Union.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -195,13 +279,44 @@ <h1>cycquery.ops.Union<a class="headerlink" href="#cycquery-ops-union" title="Li
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/_autosummary/cycquery.ops.html b/reference/api/_autosummary/cycquery.ops.html
index 013b57e..dbf0d94 100644
--- a/reference/api/_autosummary/cycquery.ops.html
+++ b/reference/api/_autosummary/cycquery.ops.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="cycquery.interface.QueryInterface" href="cycquery.interface.QueryInterface.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../intro.html#documentation">📚 Documentation</a></li>
@@ -124,10 +194,23 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../../api.html">API Reference</a></li>
-          <li class="breadcrumb-item"><a href="../cycquery.html">cycquery</a></li>
-      <li class="breadcrumb-item active">cycquery.ops</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../../api.html">API Reference</a></li>
+  
+    <li><a href="../cycquery.html">cycquery</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../../_sources/reference/api/_autosummary/cycquery.ops.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -284,13 +367,44 @@
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
+  </div>
+
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/reference/api/cycquery.html b/reference/api/cycquery.html
index 8f2e356..03bc23c 100644
--- a/reference/api/cycquery.html
+++ b/reference/api/cycquery.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -27,17 +34,78 @@
     <link rel="prev" title="API Reference" href="../../api.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../intro.html#documentation">📚 Documentation</a></li>
@@ -87,9 +157,21 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../../api.html">API Reference</a></li>
-      <li class="breadcrumb-item active">cycquery</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../../api.html">API Reference</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../../_sources/reference/api/cycquery.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -150,13 +232,44 @@ <h2>dataset APIs<a class="headerlink" href="#dataset-apis" title="Link to this h
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
+  </div>
+
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/search.html b/search.html
index 14a527c..34b206d 100644
--- a/search.html
+++ b/search.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="./">
 <head>
@@ -7,6 +13,7 @@
     <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="_static/favicon.ico"/>
     
   <!--[if lt IE 9]>
     <script src="_static/js/html5shiv.min.js"></script>
@@ -27,17 +34,78 @@
     <link rel="search" title="Search" href="#" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="#" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,10 +113,12 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="intro.html#documentation">📚 Documentation</a></li>
@@ -71,8 +141,19 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="index.html" class="icon icon-home" aria-label="Home"></a></li>
-      <li class="breadcrumb-item active">Search</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="index.html">cyclops-query</a></li>
+  
+
+  
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
       </li>
   </ul>
@@ -101,13 +182,44 @@
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
+  </div>
+
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/searchindex.js b/searchindex.js
index 1af6b17..47efff8 100644
--- a/searchindex.js
+++ b/searchindex.js
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"cycquery-ops-conditionequals"]], "cycquery.ops.ConditionGreaterThan": [[30, "cycquery-ops-conditiongreaterthan"]], "cycquery.ops.ConditionIn": [[31, "cycquery-ops-conditionin"]], "cycquery.ops.ConditionInMonths": [[32, "cycquery-ops-conditioninmonths"]], "cycquery.ops.ConditionInYears": [[33, "cycquery-ops-conditioninyears"]], "cycquery.ops.ConditionLessThan": [[34, "cycquery-ops-conditionlessthan"]], "cycquery.ops.ConditionLike": [[35, "cycquery-ops-conditionlike"]], "cycquery.ops.ConditionRegexMatch": [[36, "cycquery-ops-conditionregexmatch"]], "cycquery.ops.ConditionStartsWith": [[37, "cycquery-ops-conditionstartswith"]], "cycquery.ops.ConditionSubstring": [[38, "cycquery-ops-conditionsubstring"]], "cycquery.ops.Distinct": [[39, "cycquery-ops-distinct"]], "cycquery.ops.Drop": [[40, "cycquery-ops-drop"]], "cycquery.ops.DropEmpty": [[41, "cycquery-ops-dropempty"]], "cycquery.ops.DropNulls": [[42, "cycquery-ops-dropnulls"]], "cycquery.ops.ExtractTimestampComponent": [[43, "cycquery-ops-extracttimestampcomponent"]], "cycquery.ops.FillNull": [[44, "cycquery-ops-fillnull"]], "cycquery.ops.GroupByAggregate": [[45, "cycquery-ops-groupbyaggregate"]], "cycquery.ops.Join": [[46, "cycquery-ops-join"]], "cycquery.ops.Keep": [[47, "cycquery-ops-keep"]], "cycquery.ops.Limit": [[48, "cycquery-ops-limit"]], "cycquery.ops.Literal": [[49, "cycquery-ops-literal"]], "cycquery.ops.Or": [[50, "cycquery-ops-or"]], "cycquery.ops.OrderBy": [[51, "cycquery-ops-orderby"]], "cycquery.ops.QueryOp": [[52, "cycquery-ops-queryop"]], "cycquery.ops.RandomizeOrder": [[53, "cycquery-ops-randomizeorder"]], "cycquery.ops.Rename": [[54, "cycquery-ops-rename"]], "cycquery.ops.Reorder": [[55, "cycquery-ops-reorder"]], "cycquery.ops.ReorderAfter": [[56, "cycquery-ops-reorderafter"]], "cycquery.ops.Sequential": [[57, "cycquery-ops-sequential"]], "cycquery.ops.Substring": [[58, "cycquery-ops-substring"]], "cycquery.ops.Trim": [[59, "cycquery-ops-trim"]], "cycquery.ops.Union": [[60, "cycquery-ops-union"]], "cycquery": [[61, "module-cycquery"]], "dataset APIs": [[61, "dataset-apis"]], "Tutorials": [[62, "tutorials"]], "eICU-CRD tutorial": [[63, "eICU-CRD-tutorial"]], "Imports and instantiate EICUQuerier": [[63, "Imports-and-instantiate-EICUQuerier"]], "Example 1. Get all female patients discharged in 2014 (limit to 100 rows).": [[63, "Example-1.-Get-all-female-patients-discharged-in-2014-(limit-to-100-rows)."]], "Example 2. Get all patient encounters with diagnoses (schizophrenia in diagnosisstring), discharged in the year 2015.": [[63, "Example-2.-Get-all-patient-encounters-with-diagnoses-(schizophrenia-in-diagnosisstring),-discharged-in-the-year-2015."]], "Example 3. Get potassium lab tests for patients discharged in the year 2014, for all teaching hospitals.": [[63, "Example-3.-Get-potassium-lab-tests-for-patients-discharged-in-the-year-2014,-for-all-teaching-hospitals."]], "Example 4. Get glucose medications (substring search) for female patients discharged in 2014.": [[63, "Example-4.-Get-glucose-medications-(substring-search)-for-female-patients-discharged-in-2014."]], "GEMINI tutorial": [[64, "GEMINI-tutorial"]], "Imports and instantiate GEMINIQuerier.": [[64, "Imports-and-instantiate-GEMINIQuerier."]], "Example 1a. Create a table with only one hospitalization per patient, keeping the most recent encounter for each patient. Sort the dataset by patient_id_hashed and discharge_date_time, and then keep the recent record.": [[64, "Example-1a.-Create-a-table-with-only-one-hospitalization-per-patient,-keeping-the-most-recent-encounter-for-each-patient.-Sort-the-dataset-by-patient_id_hashed-and-discharge_date_time,-and-then-keep-the-recent-record."]], "Example 1b. From the above set of encounters, take a subset of patients who were discharged between April 1, 2015 and March 31, 2016.": [[64, "Example-1b.-From-the-above-set-of-encounters,-take-a-subset-of-patients-who-were-discharged-between-April-1,-2015-and-March-31,-2016."]], "Example 1c. From the above set of encounters, get the total number of admissions for each hospital.": [[64, "Example-1c.-From-the-above-set-of-encounters,-get-the-total-number-of-admissions-for-each-hospital."]], "Example 2a. How many sodium tests were placed between Apr 1, 2015 and May 31, 2015 at hospital 101?": [[64, "Example-2a.-How-many-sodium-tests-were-placed-between-Apr-1,-2015-and-May-31,-2015-at-hospital-101?"]], "MIMIC-III tutorial": [[65, "MIMIC-III-tutorial"]], "Imports and instantiate MIMICIIIQuerier": [[65, "Imports-and-instantiate-MIMICIIIQuerier"]], "Example 1. Get all male patients with a mortality outcome.": [[65, "Example-1.-Get-all-male-patients-with-a-mortality-outcome."]], "Example 2. Get all female patient encounters with diagnoses (gastroenteritis in ICD-9 long title).": [[65, "Example-2.-Get-all-female-patient-encounters-with-diagnoses-(gastroenteritis-in-ICD-9-long-title)."]], "Example 3. Get potassium lab tests for female patients.": [[65, "Example-3.-Get-potassium-lab-tests-for-female-patients."]], "Example 4. Get AaDO2 carevue chart events for male patients that have a valuenum of less than 20.": [[65, "Example-4.-Get-AaDO2-carevue-chart-events-for-male-patients-that-have-a-valuenum-of-less-than-20."]], "MIMIC-IV tutorial": [[66, "MIMIC-IV-tutorial"]], "Imports and instantiate MIMICIVQuerier": [[66, "Imports-and-instantiate-MIMICIVQuerier"]], "Example 1. Get all patient admissions from 2021 or later (approx year of admission)": [[66, "Example-1.-Get-all-patient-admissions-from-2021-or-later-(approx-year-of-admission)"]], "Example 2. Get all patient encounters with diagnoses (schizophrenia in ICD-10 long title), in the year 2015.": [[66, "Example-2.-Get-all-patient-encounters-with-diagnoses-(schizophrenia-in-ICD-10-long-title),-in-the-year-2015."]], "Example 3. Advanced - uses ConditionRegexMatch from cyclops.query.ops. Get all patient encounters with diagnoses (ICD-9 long title contains schizophrenia and chronic ), in the year 2015.": [[66, "Example-3.-Advanced---uses-ConditionRegexMatch-from-cyclops.query.ops.-Get-all-patient-encounters-with-diagnoses-(ICD-9-long-title-contains-schizophrenia-and-chronic-),-in-the-year-2015."]], "Example 4. Get routine vital signs for patients from year 2015.": [[66, "Example-4.-Get-routine-vital-signs-for-patients-from-year-2015."]], "Example 5. Get hemoglobin lab tests for patients from year 2009.": [[66, "Example-5.-Get-hemoglobin-lab-tests-for-patients-from-year-2009."]], "Example 6. Get radiology reports and filter on keywords lymphadenopathy and infectious occurring together from year 2009.": [[66, "Example-6.-Get-radiology-reports-and-filter-on-keywords-lymphadenopathy-and-infectious-occurring-together-from-year-2009."]], "Example 7. Get all female patient encounters from year 2015, and return as dask dataframe (lazy evaluation) with 4 partitions (batches) aggregated based on subject_id.": [[66, "Example-7.-Get-all-female-patient-encounters-from-year-2015,-and-return-as-dask-dataframe-(lazy-evaluation)-with-4-partitions-(batches)-aggregated-based-on-subject_id."]], "Example 8. Running a raw SQL string.": [[66, "Example-8.-Running-a-raw-SQL-string."]], "OMOP tutorial": [[67, "OMOP-tutorial"]], "Imports and instantiate OMOPQuerier.": [[67, "Imports-and-instantiate-OMOPQuerier."], [67, "id1"]], "Example 1. Get all patient visits in or after 2010.": [[67, "Example-1.-Get-all-patient-visits-in-or-after-2010."]], "Example 2. Get measurements for all visits in or after 2020.": [[67, "Example-2.-Get-measurements-for-all-visits-in-or-after-2020."]], "Example 1. Get all patient visits that ended in a mortality outcome in or after 2010.": [[67, "Example-1.-Get-all-patient-visits-that-ended-in-a-mortality-outcome-in-or-after-2010."]], "Example 2. Get all measurements for female patient visits with sepsis diagnoses, that ended in a mortality outcome.": [[67, "Example-2.-Get-all-measurements-for-female-patient-visits-with-sepsis-diagnoses,-that-ended-in-a-mortality-outcome."]], "query API": [[68, "query-api"]]}, "indexentries": {"cycquery.base": [[4, "module-cycquery.base"]], "module": [[4, "module-cycquery.base"], [6, "module-cycquery.eicu"], [8, "module-cycquery.gemini"], [10, "module-cycquery.interface"], [12, "module-cycquery.mimiciii"], [14, "module-cycquery.mimiciv"], [16, "module-cycquery.omop"], [18, "module-cycquery.ops"], [61, "module-cycquery"]], "datasetquerier (class in cycquery.base)": [[5, "cycquery.base.DatasetQuerier"]], "db (datasetquerier attribute)": [[5, "cycquery.base.DatasetQuerier.db"]], "get_table() (datasetquerier method)": [[5, "cycquery.base.DatasetQuerier.get_table"]], "list_columns() (datasetquerier method)": [[5, "cycquery.base.DatasetQuerier.list_columns"]], "list_custom_tables() (datasetquerier method)": [[5, "cycquery.base.DatasetQuerier.list_custom_tables"]], "list_schemas() (datasetquerier method)": [[5, "cycquery.base.DatasetQuerier.list_schemas"]], "list_tables() (datasetquerier method)": [[5, "cycquery.base.DatasetQuerier.list_tables"]], "cycquery.eicu": [[6, "module-cycquery.eicu"]], "eicuquerier (class in cycquery.eicu)": [[7, "cycquery.eicu.EICUQuerier"]], "get_table() (eicuquerier method)": [[7, "cycquery.eicu.EICUQuerier.get_table"]], "list_columns() (eicuquerier method)": [[7, "cycquery.eicu.EICUQuerier.list_columns"]], "list_custom_tables() (eicuquerier method)": [[7, "cycquery.eicu.EICUQuerier.list_custom_tables"]], "list_schemas() (eicuquerier method)": [[7, "cycquery.eicu.EICUQuerier.list_schemas"]], "list_tables() (eicuquerier method)": [[7, "cycquery.eicu.EICUQuerier.list_tables"]], "cycquery.gemini": [[8, "module-cycquery.gemini"]], "geminiquerier (class in cycquery.gemini)": [[9, "cycquery.gemini.GEMINIQuerier"]], "care_units() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.care_units"]], "diagnoses() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.diagnoses"]], "get_table() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.get_table"]], "imaging() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.imaging"]], "ip_admin() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.ip_admin"]], "list_columns() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.list_columns"]], "list_custom_tables() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.list_custom_tables"]], "list_schemas() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.list_schemas"]], "list_tables() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.list_tables"]], "room_transfer() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.room_transfer"]], "cycquery.interface": [[10, "module-cycquery.interface"]], "queryinterface (class in cycquery.interface)": [[11, "cycquery.interface.QueryInterface"]], "__init__() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.__init__"]], "clear_data() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.clear_data"]], "data (queryinterface property)": [[11, "cycquery.interface.QueryInterface.data"]], "join() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.join"]], "ops() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.ops"]], "run() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.run"]], "save() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.save"]], "union() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.union"]], "union_all() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.union_all"]], "cycquery.mimiciii": [[12, "module-cycquery.mimiciii"]], "mimiciiiquerier (class in cycquery.mimiciii)": [[13, "cycquery.mimiciii.MIMICIIIQuerier"]], "chartevents() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.chartevents"]], "diagnoses() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.diagnoses"]], "get_table() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.get_table"]], "labevents() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.labevents"]], "list_columns() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.list_columns"]], "list_custom_tables() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.list_custom_tables"]], "list_schemas() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.list_schemas"]], "list_tables() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.list_tables"]], "cycquery.mimiciv": [[14, "module-cycquery.mimiciv"]], "mimicivquerier (class in cycquery.mimiciv)": [[15, "cycquery.mimiciv.MIMICIVQuerier"]], "chartevents() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.chartevents"]], "diagnoses() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.diagnoses"]], "get_table() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.get_table"]], "labevents() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.labevents"]], "list_columns() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.list_columns"]], "list_custom_tables() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.list_custom_tables"]], "list_schemas() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.list_schemas"]], "list_tables() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.list_tables"]], "patients() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.patients"]], "cycquery.omop": [[16, "module-cycquery.omop"]], "omopquerier (class in cycquery.omop)": [[17, "cycquery.omop.OMOPQuerier"]], "get_table() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.get_table"]], "list_columns() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.list_columns"]], "list_custom_tables() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.list_custom_tables"]], "list_schemas() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.list_schemas"]], "list_tables() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.list_tables"]], "map_concept_ids_to_name() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.map_concept_ids_to_name"]], "measurement() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.measurement"]], "observation() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.observation"]], "person() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.person"]], "visit_detail() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.visit_detail"]], "visit_occurrence() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.visit_occurrence"]], "cycquery.ops": [[18, "module-cycquery.ops"]], "addcolumn (class in cycquery.ops)": [[19, "cycquery.ops.AddColumn"]], "__call__() (addcolumn method)": [[19, "cycquery.ops.AddColumn.__call__"]], "adddeltacolumn (class in cycquery.ops)": [[20, "cycquery.ops.AddDeltaColumn"]], "__call__() (adddeltacolumn method)": [[20, "cycquery.ops.AddDeltaColumn.__call__"]], "adddeltaconstant (class in cycquery.ops)": [[21, "cycquery.ops.AddDeltaConstant"]], "__call__() (adddeltaconstant method)": [[21, "cycquery.ops.AddDeltaConstant.__call__"]], "addnumeric (class in cycquery.ops)": [[22, "cycquery.ops.AddNumeric"]], "__call__() (addnumeric method)": [[22, "cycquery.ops.AddNumeric.__call__"]], "and (class in cycquery.ops)": [[23, "cycquery.ops.And"]], "__call__() (and method)": [[23, "cycquery.ops.And.__call__"]], "apply (class in cycquery.ops)": [[24, "cycquery.ops.Apply"]], "__call__() (apply method)": [[24, "cycquery.ops.Apply.__call__"]], "cast (class in cycquery.ops)": [[25, "cycquery.ops.Cast"]], "__call__() (cast method)": [[25, "cycquery.ops.Cast.__call__"]], "conditionafterdate (class in cycquery.ops)": [[26, "cycquery.ops.ConditionAfterDate"]], "__call__() (conditionafterdate method)": [[26, "cycquery.ops.ConditionAfterDate.__call__"]], "conditionbeforedate (class in cycquery.ops)": [[27, "cycquery.ops.ConditionBeforeDate"]], "__call__() (conditionbeforedate method)": [[27, "cycquery.ops.ConditionBeforeDate.__call__"]], "conditionendswith (class in cycquery.ops)": [[28, "cycquery.ops.ConditionEndsWith"]], "__call__() (conditionendswith method)": [[28, "cycquery.ops.ConditionEndsWith.__call__"]], "conditionequals (class in cycquery.ops)": [[29, "cycquery.ops.ConditionEquals"]], "__call__() (conditionequals method)": [[29, "cycquery.ops.ConditionEquals.__call__"]], "conditiongreaterthan (class in cycquery.ops)": [[30, "cycquery.ops.ConditionGreaterThan"]], "__call__() (conditiongreaterthan method)": [[30, "cycquery.ops.ConditionGreaterThan.__call__"]], "conditionin (class in cycquery.ops)": [[31, "cycquery.ops.ConditionIn"]], "__call__() (conditionin method)": [[31, "cycquery.ops.ConditionIn.__call__"]], "conditioninmonths (class in cycquery.ops)": [[32, "cycquery.ops.ConditionInMonths"]], "__call__() (conditioninmonths method)": [[32, "cycquery.ops.ConditionInMonths.__call__"]], "conditioninyears (class in cycquery.ops)": [[33, "cycquery.ops.ConditionInYears"]], "__call__() (conditioninyears method)": [[33, "cycquery.ops.ConditionInYears.__call__"]], "conditionlessthan (class in cycquery.ops)": [[34, "cycquery.ops.ConditionLessThan"]], "__call__() (conditionlessthan method)": [[34, "cycquery.ops.ConditionLessThan.__call__"]], "conditionlike (class in cycquery.ops)": [[35, "cycquery.ops.ConditionLike"]], "__call__() (conditionlike method)": [[35, "cycquery.ops.ConditionLike.__call__"]], "conditionregexmatch (class in cycquery.ops)": [[36, "cycquery.ops.ConditionRegexMatch"]], "__call__() (conditionregexmatch method)": [[36, "cycquery.ops.ConditionRegexMatch.__call__"]], 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"Pre-commit hooks": [[1, "pre-commit-hooks"]], "Coding guidelines": [[1, "coding-guidelines"]], "Welcome to cyclops-query\u2019s documentation!": [[2, "welcome-to-cyclops-query-s-documentation"]], "Contents:": [[2, null]], "cyclops-query": [[3, "cyclops-query"]], "\ud83d\udc23 Getting Started": [[3, "getting-started"]], "Installing cyclops-query using pip": [[3, "installing-cyclops-query-using-pip"]], "\ud83e\uddd1\ud83c\udfff\u200d\ud83d\udcbb Developing": [[3, "developing"]], "Using poetry": [[3, "using-poetry"]], "Contributing": [[3, "contributing"]], "\ud83d\udcda Documentation": [[3, "documentation"]], "\ud83c\udf93 Citation": [[3, "citation"]], "cycquery.base": [[4, "module-cycquery.base"]], "cycquery.base.DatasetQuerier": [[5, "cycquery-base-datasetquerier"]], "cycquery.eicu": [[6, "module-cycquery.eicu"]], "cycquery.eicu.EICUQuerier": [[7, "cycquery-eicu-eicuquerier"]], "cycquery.gemini": [[8, "module-cycquery.gemini"]], "cycquery.gemini.GEMINIQuerier": [[9, "cycquery-gemini-geminiquerier"]], "cycquery.interface": [[10, "module-cycquery.interface"]], "cycquery.interface.QueryInterface": [[11, "cycquery-interface-queryinterface"]], "cycquery.mimiciii": [[12, "module-cycquery.mimiciii"]], "cycquery.mimiciii.MIMICIIIQuerier": [[13, "cycquery-mimiciii-mimiciiiquerier"]], "cycquery.mimiciv": [[14, "module-cycquery.mimiciv"]], "cycquery.mimiciv.MIMICIVQuerier": [[15, "cycquery-mimiciv-mimicivquerier"]], "cycquery.omop": [[16, "module-cycquery.omop"]], "cycquery.omop.OMOPQuerier": [[17, "cycquery-omop-omopquerier"]], "cycquery.ops": [[18, "module-cycquery.ops"]], "cycquery.ops.AddColumn": [[19, "cycquery-ops-addcolumn"]], "cycquery.ops.AddDeltaColumn": [[20, "cycquery-ops-adddeltacolumn"]], "cycquery.ops.AddDeltaConstant": [[21, "cycquery-ops-adddeltaconstant"]], "cycquery.ops.AddNumeric": [[22, "cycquery-ops-addnumeric"]], "cycquery.ops.And": [[23, "cycquery-ops-and"]], "cycquery.ops.Apply": [[24, "cycquery-ops-apply"]], "cycquery.ops.Cast": [[25, "cycquery-ops-cast"]], "cycquery.ops.ConditionAfterDate": [[26, "cycquery-ops-conditionafterdate"]], "cycquery.ops.ConditionBeforeDate": [[27, "cycquery-ops-conditionbeforedate"]], "cycquery.ops.ConditionEndsWith": [[28, "cycquery-ops-conditionendswith"]], "cycquery.ops.ConditionEquals": [[29, "cycquery-ops-conditionequals"]], "cycquery.ops.ConditionGreaterThan": [[30, "cycquery-ops-conditiongreaterthan"]], "cycquery.ops.ConditionIn": [[31, "cycquery-ops-conditionin"]], "cycquery.ops.ConditionInMonths": [[32, "cycquery-ops-conditioninmonths"]], "cycquery.ops.ConditionInYears": [[33, "cycquery-ops-conditioninyears"]], "cycquery.ops.ConditionLessThan": [[34, "cycquery-ops-conditionlessthan"]], "cycquery.ops.ConditionLike": [[35, "cycquery-ops-conditionlike"]], "cycquery.ops.ConditionRegexMatch": [[36, "cycquery-ops-conditionregexmatch"]], "cycquery.ops.ConditionStartsWith": [[37, "cycquery-ops-conditionstartswith"]], "cycquery.ops.ConditionSubstring": [[38, "cycquery-ops-conditionsubstring"]], "cycquery.ops.Distinct": [[39, "cycquery-ops-distinct"]], "cycquery.ops.Drop": [[40, "cycquery-ops-drop"]], "cycquery.ops.DropEmpty": [[41, "cycquery-ops-dropempty"]], "cycquery.ops.DropNulls": [[42, "cycquery-ops-dropnulls"]], "cycquery.ops.ExtractTimestampComponent": [[43, "cycquery-ops-extracttimestampcomponent"]], "cycquery.ops.FillNull": [[44, "cycquery-ops-fillnull"]], "cycquery.ops.GroupByAggregate": [[45, "cycquery-ops-groupbyaggregate"]], "cycquery.ops.Join": [[46, "cycquery-ops-join"]], "cycquery.ops.Keep": [[47, "cycquery-ops-keep"]], "cycquery.ops.Limit": [[48, "cycquery-ops-limit"]], "cycquery.ops.Literal": [[49, "cycquery-ops-literal"]], "cycquery.ops.Or": [[50, "cycquery-ops-or"]], "cycquery.ops.OrderBy": [[51, "cycquery-ops-orderby"]], "cycquery.ops.QueryOp": [[52, "cycquery-ops-queryop"]], "cycquery.ops.RandomizeOrder": [[53, "cycquery-ops-randomizeorder"]], "cycquery.ops.Rename": [[54, "cycquery-ops-rename"]], "cycquery.ops.Reorder": [[55, "cycquery-ops-reorder"]], "cycquery.ops.ReorderAfter": [[56, "cycquery-ops-reorderafter"]], "cycquery.ops.Sequential": [[57, "cycquery-ops-sequential"]], "cycquery.ops.Substring": [[58, "cycquery-ops-substring"]], "cycquery.ops.Trim": [[59, "cycquery-ops-trim"]], "cycquery.ops.Union": [[60, "cycquery-ops-union"]], "cycquery": [[61, "module-cycquery"]], "dataset APIs": [[61, "dataset-apis"]], "Tutorials": [[62, "tutorials"]], "eICU-CRD tutorial": [[63, "eICU-CRD-tutorial"]], "Imports and instantiate EICUQuerier": [[63, "Imports-and-instantiate-EICUQuerier"]], "Example 1. Get all female patients discharged in 2014 (limit to 100 rows).": [[63, "Example-1.-Get-all-female-patients-discharged-in-2014-(limit-to-100-rows)."]], "Example 2. Get all patient encounters with diagnoses (schizophrenia in diagnosisstring), discharged in the year 2015.": [[63, "Example-2.-Get-all-patient-encounters-with-diagnoses-(schizophrenia-in-diagnosisstring),-discharged-in-the-year-2015."]], "Example 3. Get potassium lab tests for patients discharged in the year 2014, for all teaching hospitals.": [[63, "Example-3.-Get-potassium-lab-tests-for-patients-discharged-in-the-year-2014,-for-all-teaching-hospitals."]], "Example 4. Get glucose medications (substring search) for female patients discharged in 2014.": [[63, "Example-4.-Get-glucose-medications-(substring-search)-for-female-patients-discharged-in-2014."]], "GEMINI tutorial": [[64, "GEMINI-tutorial"]], "Imports and instantiate GEMINIQuerier.": [[64, "Imports-and-instantiate-GEMINIQuerier."]], "Example 1a. Create a table with only one hospitalization per patient, keeping the most recent encounter for each patient. Sort the dataset by patient_id_hashed and discharge_date_time, and then keep the recent record.": [[64, "Example-1a.-Create-a-table-with-only-one-hospitalization-per-patient,-keeping-the-most-recent-encounter-for-each-patient.-Sort-the-dataset-by-patient_id_hashed-and-discharge_date_time,-and-then-keep-the-recent-record."]], "Example 1b. From the above set of encounters, take a subset of patients who were discharged between April 1, 2015 and March 31, 2016.": [[64, "Example-1b.-From-the-above-set-of-encounters,-take-a-subset-of-patients-who-were-discharged-between-April-1,-2015-and-March-31,-2016."]], "Example 1c. From the above set of encounters, get the total number of admissions for each hospital.": [[64, "Example-1c.-From-the-above-set-of-encounters,-get-the-total-number-of-admissions-for-each-hospital."]], "Example 2a. How many sodium tests were placed between Apr 1, 2015 and May 31, 2015 at hospital 101?": [[64, "Example-2a.-How-many-sodium-tests-were-placed-between-Apr-1,-2015-and-May-31,-2015-at-hospital-101?"]], "MIMIC-III tutorial": [[65, "MIMIC-III-tutorial"]], "Imports and instantiate MIMICIIIQuerier": [[65, "Imports-and-instantiate-MIMICIIIQuerier"]], "Example 1. Get all male patients with a mortality outcome.": [[65, "Example-1.-Get-all-male-patients-with-a-mortality-outcome."]], "Example 2. Get all female patient encounters with diagnoses (gastroenteritis in ICD-9 long title).": [[65, "Example-2.-Get-all-female-patient-encounters-with-diagnoses-(gastroenteritis-in-ICD-9-long-title)."]], "Example 3. Get potassium lab tests for female patients.": [[65, "Example-3.-Get-potassium-lab-tests-for-female-patients."]], "Example 4. Get AaDO2 carevue chart events for male patients that have a valuenum of less than 20.": [[65, "Example-4.-Get-AaDO2-carevue-chart-events-for-male-patients-that-have-a-valuenum-of-less-than-20."]], "MIMIC-IV tutorial": [[66, "MIMIC-IV-tutorial"]], "Imports and instantiate MIMICIVQuerier": [[66, "Imports-and-instantiate-MIMICIVQuerier"]], "Example 1. Get all patient admissions from 2021 or later (approx year of admission)": [[66, "Example-1.-Get-all-patient-admissions-from-2021-or-later-(approx-year-of-admission)"]], "Example 2. Get all patient encounters with diagnoses (schizophrenia in ICD-10 long title), in the year 2015.": [[66, "Example-2.-Get-all-patient-encounters-with-diagnoses-(schizophrenia-in-ICD-10-long-title),-in-the-year-2015."]], "Example 3. Advanced - uses ConditionRegexMatch from cyclops.query.ops. Get all patient encounters with diagnoses (ICD-9 long title contains schizophrenia and chronic ), in the year 2015.": [[66, "Example-3.-Advanced---uses-ConditionRegexMatch-from-cyclops.query.ops.-Get-all-patient-encounters-with-diagnoses-(ICD-9-long-title-contains-schizophrenia-and-chronic-),-in-the-year-2015."]], "Example 4. Get routine vital signs for patients from year 2015.": [[66, "Example-4.-Get-routine-vital-signs-for-patients-from-year-2015."]], "Example 5. Get hemoglobin lab tests for patients from year 2009.": [[66, "Example-5.-Get-hemoglobin-lab-tests-for-patients-from-year-2009."]], "Example 6. Get radiology reports and filter on keywords lymphadenopathy and infectious occurring together from year 2009.": [[66, "Example-6.-Get-radiology-reports-and-filter-on-keywords-lymphadenopathy-and-infectious-occurring-together-from-year-2009."]], "Example 7. Get all female patient encounters from year 2015, and return as dask dataframe (lazy evaluation) with 4 partitions (batches) aggregated based on subject_id.": [[66, "Example-7.-Get-all-female-patient-encounters-from-year-2015,-and-return-as-dask-dataframe-(lazy-evaluation)-with-4-partitions-(batches)-aggregated-based-on-subject_id."]], "Example 8. Running a raw SQL string.": [[66, "Example-8.-Running-a-raw-SQL-string."]], "OMOP tutorial": [[67, "OMOP-tutorial"]], "Imports and instantiate OMOPQuerier.": [[67, "Imports-and-instantiate-OMOPQuerier."], [67, "id1"]], "Example 1. Get all patient visits in or after 2010.": [[67, "Example-1.-Get-all-patient-visits-in-or-after-2010."]], "Example 2. Get measurements for all visits in or after 2020.": [[67, "Example-2.-Get-measurements-for-all-visits-in-or-after-2020."]], "Example 1. Get all patient visits that ended in a mortality outcome in or after 2010.": [[67, "Example-1.-Get-all-patient-visits-that-ended-in-a-mortality-outcome-in-or-after-2010."]], "Example 2. Get all measurements for female patient visits with sepsis diagnoses, that ended in a mortality outcome.": [[67, "Example-2.-Get-all-measurements-for-female-patient-visits-with-sepsis-diagnoses,-that-ended-in-a-mortality-outcome."]]}, "indexentries": {"cycquery.base": [[4, "module-cycquery.base"]], "module": [[4, "module-cycquery.base"], [6, "module-cycquery.eicu"], [8, "module-cycquery.gemini"], [10, "module-cycquery.interface"], [12, "module-cycquery.mimiciii"], [14, "module-cycquery.mimiciv"], [16, "module-cycquery.omop"], [18, "module-cycquery.ops"], [61, "module-cycquery"]], "datasetquerier (class in cycquery.base)": [[5, "cycquery.base.DatasetQuerier"]], "db (datasetquerier attribute)": [[5, "cycquery.base.DatasetQuerier.db"]], "get_table() (datasetquerier method)": [[5, "cycquery.base.DatasetQuerier.get_table"]], "list_columns() (datasetquerier method)": [[5, "cycquery.base.DatasetQuerier.list_columns"]], "list_custom_tables() (datasetquerier method)": [[5, "cycquery.base.DatasetQuerier.list_custom_tables"]], "list_schemas() (datasetquerier method)": [[5, "cycquery.base.DatasetQuerier.list_schemas"]], "list_tables() (datasetquerier method)": [[5, "cycquery.base.DatasetQuerier.list_tables"]], "cycquery.eicu": [[6, "module-cycquery.eicu"]], "eicuquerier (class in cycquery.eicu)": [[7, "cycquery.eicu.EICUQuerier"]], "get_table() (eicuquerier method)": [[7, "cycquery.eicu.EICUQuerier.get_table"]], "list_columns() (eicuquerier method)": [[7, "cycquery.eicu.EICUQuerier.list_columns"]], "list_custom_tables() (eicuquerier method)": [[7, "cycquery.eicu.EICUQuerier.list_custom_tables"]], "list_schemas() (eicuquerier method)": [[7, "cycquery.eicu.EICUQuerier.list_schemas"]], "list_tables() (eicuquerier method)": [[7, "cycquery.eicu.EICUQuerier.list_tables"]], "cycquery.gemini": [[8, "module-cycquery.gemini"]], "geminiquerier (class in cycquery.gemini)": [[9, "cycquery.gemini.GEMINIQuerier"]], "care_units() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.care_units"]], "diagnoses() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.diagnoses"]], "get_table() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.get_table"]], "imaging() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.imaging"]], "ip_admin() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.ip_admin"]], "list_columns() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.list_columns"]], "list_custom_tables() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.list_custom_tables"]], "list_schemas() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.list_schemas"]], "list_tables() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.list_tables"]], "room_transfer() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.room_transfer"]], "cycquery.interface": [[10, "module-cycquery.interface"]], "queryinterface (class in cycquery.interface)": [[11, "cycquery.interface.QueryInterface"]], "__init__() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.__init__"]], "clear_data() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.clear_data"]], "data (queryinterface property)": [[11, "cycquery.interface.QueryInterface.data"]], "join() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.join"]], "ops() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.ops"]], "run() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.run"]], "save() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.save"]], "union() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.union"]], "union_all() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.union_all"]], "cycquery.mimiciii": [[12, "module-cycquery.mimiciii"]], "mimiciiiquerier (class in cycquery.mimiciii)": [[13, "cycquery.mimiciii.MIMICIIIQuerier"]], "chartevents() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.chartevents"]], "diagnoses() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.diagnoses"]], "get_table() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.get_table"]], "labevents() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.labevents"]], "list_columns() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.list_columns"]], "list_custom_tables() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.list_custom_tables"]], "list_schemas() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.list_schemas"]], "list_tables() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.list_tables"]], "cycquery.mimiciv": [[14, "module-cycquery.mimiciv"]], "mimicivquerier (class in cycquery.mimiciv)": [[15, "cycquery.mimiciv.MIMICIVQuerier"]], "chartevents() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.chartevents"]], "diagnoses() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.diagnoses"]], "get_table() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.get_table"]], "labevents() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.labevents"]], "list_columns() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.list_columns"]], "list_custom_tables() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.list_custom_tables"]], "list_schemas() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.list_schemas"]], "list_tables() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.list_tables"]], "patients() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.patients"]], "cycquery.omop": [[16, "module-cycquery.omop"]], "omopquerier (class in cycquery.omop)": [[17, "cycquery.omop.OMOPQuerier"]], "get_table() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.get_table"]], "list_columns() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.list_columns"]], "list_custom_tables() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.list_custom_tables"]], "list_schemas() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.list_schemas"]], "list_tables() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.list_tables"]], "map_concept_ids_to_name() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.map_concept_ids_to_name"]], "measurement() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.measurement"]], "observation() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.observation"]], "person() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.person"]], "visit_detail() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.visit_detail"]], "visit_occurrence() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.visit_occurrence"]], "cycquery.ops": [[18, "module-cycquery.ops"]], "addcolumn (class in cycquery.ops)": [[19, "cycquery.ops.AddColumn"]], "__call__() (addcolumn method)": [[19, "cycquery.ops.AddColumn.__call__"]], "adddeltacolumn (class in cycquery.ops)": [[20, "cycquery.ops.AddDeltaColumn"]], "__call__() (adddeltacolumn method)": [[20, "cycquery.ops.AddDeltaColumn.__call__"]], "adddeltaconstant (class in cycquery.ops)": [[21, "cycquery.ops.AddDeltaConstant"]], "__call__() (adddeltaconstant method)": [[21, "cycquery.ops.AddDeltaConstant.__call__"]], "addnumeric (class in cycquery.ops)": [[22, "cycquery.ops.AddNumeric"]], "__call__() (addnumeric method)": [[22, "cycquery.ops.AddNumeric.__call__"]], "and (class in cycquery.ops)": [[23, "cycquery.ops.And"]], "__call__() (and method)": [[23, "cycquery.ops.And.__call__"]], "apply (class in cycquery.ops)": [[24, "cycquery.ops.Apply"]], "__call__() (apply method)": [[24, "cycquery.ops.Apply.__call__"]], "cast (class in cycquery.ops)": [[25, "cycquery.ops.Cast"]], "__call__() (cast method)": [[25, "cycquery.ops.Cast.__call__"]], "conditionafterdate (class in cycquery.ops)": [[26, "cycquery.ops.ConditionAfterDate"]], "__call__() (conditionafterdate method)": [[26, "cycquery.ops.ConditionAfterDate.__call__"]], "conditionbeforedate (class in cycquery.ops)": [[27, "cycquery.ops.ConditionBeforeDate"]], "__call__() (conditionbeforedate method)": [[27, "cycquery.ops.ConditionBeforeDate.__call__"]], "conditionendswith (class in cycquery.ops)": [[28, "cycquery.ops.ConditionEndsWith"]], "__call__() (conditionendswith method)": [[28, "cycquery.ops.ConditionEndsWith.__call__"]], "conditionequals (class in cycquery.ops)": [[29, "cycquery.ops.ConditionEquals"]], "__call__() (conditionequals method)": [[29, "cycquery.ops.ConditionEquals.__call__"]], "conditiongreaterthan (class in cycquery.ops)": [[30, "cycquery.ops.ConditionGreaterThan"]], "__call__() (conditiongreaterthan method)": [[30, "cycquery.ops.ConditionGreaterThan.__call__"]], "conditionin (class in cycquery.ops)": [[31, "cycquery.ops.ConditionIn"]], "__call__() (conditionin method)": [[31, "cycquery.ops.ConditionIn.__call__"]], "conditioninmonths (class in cycquery.ops)": [[32, "cycquery.ops.ConditionInMonths"]], "__call__() (conditioninmonths method)": [[32, "cycquery.ops.ConditionInMonths.__call__"]], "conditioninyears (class in cycquery.ops)": [[33, "cycquery.ops.ConditionInYears"]], "__call__() (conditioninyears method)": [[33, "cycquery.ops.ConditionInYears.__call__"]], "conditionlessthan (class in cycquery.ops)": [[34, "cycquery.ops.ConditionLessThan"]], "__call__() (conditionlessthan method)": [[34, "cycquery.ops.ConditionLessThan.__call__"]], "conditionlike (class in cycquery.ops)": [[35, "cycquery.ops.ConditionLike"]], "__call__() (conditionlike method)": [[35, "cycquery.ops.ConditionLike.__call__"]], "conditionregexmatch (class in cycquery.ops)": [[36, "cycquery.ops.ConditionRegexMatch"]], "__call__() (conditionregexmatch method)": [[36, "cycquery.ops.ConditionRegexMatch.__call__"]], "conditionstartswith (class in cycquery.ops)": [[37, "cycquery.ops.ConditionStartsWith"]], "__call__() (conditionstartswith method)": [[37, "cycquery.ops.ConditionStartsWith.__call__"]], "conditionsubstring (class in cycquery.ops)": [[38, "cycquery.ops.ConditionSubstring"]], "__call__() (conditionsubstring method)": [[38, "cycquery.ops.ConditionSubstring.__call__"]], "distinct (class in cycquery.ops)": [[39, "cycquery.ops.Distinct"]], "__call__() (distinct method)": [[39, "cycquery.ops.Distinct.__call__"]], "drop (class in cycquery.ops)": [[40, "cycquery.ops.Drop"]], "__call__() (drop method)": [[40, "cycquery.ops.Drop.__call__"]], "dropempty (class in cycquery.ops)": [[41, "cycquery.ops.DropEmpty"]], "__call__() (dropempty method)": [[41, "cycquery.ops.DropEmpty.__call__"]], "dropnulls (class in cycquery.ops)": [[42, "cycquery.ops.DropNulls"]], "__call__() (dropnulls method)": [[42, "cycquery.ops.DropNulls.__call__"]], "extracttimestampcomponent (class in cycquery.ops)": [[43, 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(class in cycquery.ops)": [[50, "cycquery.ops.Or"]], "__call__() (or method)": [[50, "cycquery.ops.Or.__call__"]], "orderby (class in cycquery.ops)": [[51, "cycquery.ops.OrderBy"]], "__call__() (orderby method)": [[51, "cycquery.ops.OrderBy.__call__"]], "queryop (class in cycquery.ops)": [[52, "cycquery.ops.QueryOp"]], "__call__() (queryop method)": [[52, "cycquery.ops.QueryOp.__call__"]], "randomizeorder (class in cycquery.ops)": [[53, "cycquery.ops.RandomizeOrder"]], "__call__() (randomizeorder method)": [[53, "cycquery.ops.RandomizeOrder.__call__"]], "rename (class in cycquery.ops)": [[54, "cycquery.ops.Rename"]], "__call__() (rename method)": [[54, "cycquery.ops.Rename.__call__"]], "reorder (class in cycquery.ops)": [[55, "cycquery.ops.Reorder"]], "__call__() (reorder method)": [[55, "cycquery.ops.Reorder.__call__"]], "reorderafter (class in cycquery.ops)": [[56, "cycquery.ops.ReorderAfter"]], "__call__() (reorderafter method)": [[56, "cycquery.ops.ReorderAfter.__call__"]], "sequential (class in cycquery.ops)": [[57, "cycquery.ops.Sequential"]], "__add__() (sequential method)": [[57, "cycquery.ops.Sequential.__add__"]], "__call__() (sequential method)": [[57, "cycquery.ops.Sequential.__call__"]], "__init__() (sequential method)": [[57, "cycquery.ops.Sequential.__init__"]], "append() (sequential method)": [[57, "cycquery.ops.Sequential.append"]], "extend() (sequential method)": [[57, "cycquery.ops.Sequential.extend"]], "insert() (sequential method)": [[57, "cycquery.ops.Sequential.insert"]], "pop() (sequential method)": [[57, "cycquery.ops.Sequential.pop"]], "substring (class in cycquery.ops)": [[58, "cycquery.ops.Substring"]], "__call__() (substring method)": [[58, "cycquery.ops.Substring.__call__"]], "trim (class in cycquery.ops)": [[59, "cycquery.ops.Trim"]], "__call__() (trim method)": [[59, "cycquery.ops.Trim.__call__"]], "union (class in cycquery.ops)": [[60, "cycquery.ops.Union"]], "__call__() (union method)": [[60, "cycquery.ops.Union.__call__"]], "cycquery": [[61, "module-cycquery"]]}})
\ No newline at end of file
diff --git a/tutorials.html b/tutorials.html
index d5d1f71..848be27 100644
--- a/tutorials.html
+++ b/tutorials.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="./">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -23,21 +30,82 @@
     <script src="_static/js/theme.js"></script>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
-    <link rel="next" title="query API" href="tutorials_query.html" />
+    <link rel="next" title="MIMIC-III tutorial" href="tutorials/mimiciii.html" />
     <link rel="prev" title="Contributing to cyclops-query" href="contributing.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -45,17 +113,23 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="intro.html#documentation">📚 Documentation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="intro.html#citation">🎓 Citation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="contributing.html">Contributing to cyclops-query</a></li>
 <li class="toctree-l1 current"><a class="current reference internal" href="#">Tutorials</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="tutorials_query.html">query API</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciii.html">MIMIC-III tutorial</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciv.html">MIMIC-IV tutorial</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/eicu.html">eICU-CRD tutorial</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/omop.html">OMOP tutorial</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/gemini.html">GEMINI tutorial</a></li>
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="api.html">API Reference</a></li>
@@ -74,8 +148,19 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="index.html" class="icon icon-home" aria-label="Home"></a></li>
-      <li class="breadcrumb-item active">Tutorials</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="index.html">cyclops-query</a></li>
+  
+
+  
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="_sources/tutorials.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -87,54 +172,55 @@
              
   <section id="tutorials">
 <h1>Tutorials<a class="headerlink" href="#tutorials" title="Link to this heading"></a></h1>
+<p>The cyclops-query tool allows you to query EHR databases. It is a Python API that
+that communicates with postgresql databases. It is a wrapper around the
+SQLAlchemy ORM and uses SQLAlchemy query objects and functions to build
+queries.</p>
 <div class="toctree-wrapper compound">
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="tutorials_query.html">query API</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciii.html">MIMIC-III tutorial</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="tutorials/mimiciii.html#Imports-and-instantiate-MIMICIIIQuerier">Imports and instantiate <code class="docutils literal notranslate"><span class="pre">MIMICIIIQuerier</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="tutorials/mimiciii.html#Example-1.-Get-all-male-patients-with-a-mortality-outcome.">Example 1. Get all male patients with a mortality outcome.</a></li>
-<li class="toctree-l3"><a class="reference internal" href="tutorials/mimiciii.html#Example-2.-Get-all-female-patient-encounters-with-diagnoses-(gastroenteritis-in-ICD-9-long-title).">Example 2. Get all female patient encounters with diagnoses (<code class="docutils literal notranslate"><span class="pre">gastroenteritis</span></code> in ICD-9 long title).</a></li>
-<li class="toctree-l3"><a class="reference internal" href="tutorials/mimiciii.html#Example-3.-Get-potassium-lab-tests-for-female-patients.">Example 3. Get potassium lab tests for female patients.</a></li>
-<li class="toctree-l3"><a class="reference internal" href="tutorials/mimiciii.html#Example-4.-Get-AaDO2-carevue-chart-events-for-male-patients-that-have-a-valuenum-of-less-than-20.">Example 4. Get AaDO2 carevue chart events for male patients that have a <code class="docutils literal notranslate"><span class="pre">valuenum</span></code> of less than 20.</a></li>
+<li class="toctree-l1"><a class="reference internal" href="tutorials/mimiciii.html">MIMIC-III tutorial</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciii.html#Imports-and-instantiate-MIMICIIIQuerier">Imports and instantiate <code class="docutils literal notranslate"><span class="pre">MIMICIIIQuerier</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciii.html#Example-1.-Get-all-male-patients-with-a-mortality-outcome.">Example 1. Get all male patients with a mortality outcome.</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciii.html#Example-2.-Get-all-female-patient-encounters-with-diagnoses-(gastroenteritis-in-ICD-9-long-title).">Example 2. Get all female patient encounters with diagnoses (<code class="docutils literal notranslate"><span class="pre">gastroenteritis</span></code> in ICD-9 long title).</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciii.html#Example-3.-Get-potassium-lab-tests-for-female-patients.">Example 3. Get potassium lab tests for female patients.</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciii.html#Example-4.-Get-AaDO2-carevue-chart-events-for-male-patients-that-have-a-valuenum-of-less-than-20.">Example 4. Get AaDO2 carevue chart events for male patients that have a <code class="docutils literal notranslate"><span class="pre">valuenum</span></code> of less than 20.</a></li>
 </ul>
 </li>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciv.html">MIMIC-IV tutorial</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="tutorials/mimiciv.html#Imports-and-instantiate-MIMICIVQuerier">Imports and instantiate <code class="docutils literal notranslate"><span class="pre">MIMICIVQuerier</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="tutorials/mimiciv.html#Example-1.-Get-all-patient-admissions-from-2021-or-later-(approx-year-of-admission)">Example 1. Get all patient admissions from 2021 or later (approx year of admission)</a></li>
-<li class="toctree-l3"><a class="reference internal" href="tutorials/mimiciv.html#Example-2.-Get-all-patient-encounters-with-diagnoses-(schizophrenia-in-ICD-10-long-title),-in-the-year-2015.">Example 2. Get all patient encounters with diagnoses (<code class="docutils literal notranslate"><span class="pre">schizophrenia</span></code> in ICD-10 long title), in the year 2015.</a></li>
-<li class="toctree-l3"><a class="reference internal" href="tutorials/mimiciv.html#Example-3.-Advanced---uses-ConditionRegexMatch-from-cyclops.query.ops.-Get-all-patient-encounters-with-diagnoses-(ICD-9-long-title-contains-schizophrenia-and-chronic-),-in-the-year-2015.">Example 3. Advanced - uses <code class="docutils literal notranslate"><span class="pre">ConditionRegexMatch</span></code> from <code class="docutils literal notranslate"><span class="pre">cyclops.query.ops</span></code>. Get all patient encounters with diagnoses (ICD-9 long title contains <code class="docutils literal notranslate"><span class="pre">schizophrenia</span></code> and <code class="docutils literal notranslate"><span class="pre">chronic</span></code> ), in the year 2015.</a></li>
-<li class="toctree-l3"><a class="reference internal" href="tutorials/mimiciv.html#Example-4.-Get-routine-vital-signs-for-patients-from-year-2015.">Example 4. Get routine vital signs for patients from year 2015.</a></li>
-<li class="toctree-l3"><a class="reference internal" href="tutorials/mimiciv.html#Example-5.-Get-hemoglobin-lab-tests-for-patients-from-year-2009.">Example 5. Get hemoglobin lab tests for patients from year 2009.</a></li>
-<li class="toctree-l3"><a class="reference internal" href="tutorials/mimiciv.html#Example-6.-Get-radiology-reports-and-filter-on-keywords-lymphadenopathy-and-infectious-occurring-together-from-year-2009.">Example 6. Get radiology reports and filter on keywords <code class="docutils literal notranslate"><span class="pre">lymphadenopathy</span></code> and <code class="docutils literal notranslate"><span class="pre">infectious</span></code> occurring together from year 2009.</a></li>
-<li class="toctree-l3"><a class="reference internal" href="tutorials/mimiciv.html#Example-7.-Get-all-female-patient-encounters-from-year-2015,-and-return-as-dask-dataframe-(lazy-evaluation)-with-4-partitions-(batches)-aggregated-based-on-subject_id.">Example 7. Get all female patient encounters from year 2015, and return as dask dataframe (lazy evaluation) with 4 partitions (batches) aggregated based on <code class="docutils literal notranslate"><span class="pre">subject_id</span></code>.</a></li>
-<li class="toctree-l3"><a class="reference internal" href="tutorials/mimiciv.html#Example-8.-Running-a-raw-SQL-string.">Example 8. Running a raw SQL string.</a></li>
+<li class="toctree-l1"><a class="reference internal" href="tutorials/mimiciv.html">MIMIC-IV tutorial</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciv.html#Imports-and-instantiate-MIMICIVQuerier">Imports and instantiate <code class="docutils literal notranslate"><span class="pre">MIMICIVQuerier</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciv.html#Example-1.-Get-all-patient-admissions-from-2021-or-later-(approx-year-of-admission)">Example 1. Get all patient admissions from 2021 or later (approx year of admission)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciv.html#Example-2.-Get-all-patient-encounters-with-diagnoses-(schizophrenia-in-ICD-10-long-title),-in-the-year-2015.">Example 2. Get all patient encounters with diagnoses (<code class="docutils literal notranslate"><span class="pre">schizophrenia</span></code> in ICD-10 long title), in the year 2015.</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciv.html#Example-3.-Advanced---uses-ConditionRegexMatch-from-cyclops.query.ops.-Get-all-patient-encounters-with-diagnoses-(ICD-9-long-title-contains-schizophrenia-and-chronic-),-in-the-year-2015.">Example 3. Advanced - uses <code class="docutils literal notranslate"><span class="pre">ConditionRegexMatch</span></code> from <code class="docutils literal notranslate"><span class="pre">cyclops.query.ops</span></code>. Get all patient encounters with diagnoses (ICD-9 long title contains <code class="docutils literal notranslate"><span class="pre">schizophrenia</span></code> and <code class="docutils literal notranslate"><span class="pre">chronic</span></code> ), in the year 2015.</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciv.html#Example-4.-Get-routine-vital-signs-for-patients-from-year-2015.">Example 4. Get routine vital signs for patients from year 2015.</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciv.html#Example-5.-Get-hemoglobin-lab-tests-for-patients-from-year-2009.">Example 5. Get hemoglobin lab tests for patients from year 2009.</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciv.html#Example-6.-Get-radiology-reports-and-filter-on-keywords-lymphadenopathy-and-infectious-occurring-together-from-year-2009.">Example 6. Get radiology reports and filter on keywords <code class="docutils literal notranslate"><span class="pre">lymphadenopathy</span></code> and <code class="docutils literal notranslate"><span class="pre">infectious</span></code> occurring together from year 2009.</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciv.html#Example-7.-Get-all-female-patient-encounters-from-year-2015,-and-return-as-dask-dataframe-(lazy-evaluation)-with-4-partitions-(batches)-aggregated-based-on-subject_id.">Example 7. Get all female patient encounters from year 2015, and return as dask dataframe (lazy evaluation) with 4 partitions (batches) aggregated based on <code class="docutils literal notranslate"><span class="pre">subject_id</span></code>.</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciv.html#Example-8.-Running-a-raw-SQL-string.">Example 8. Running a raw SQL string.</a></li>
 </ul>
 </li>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/eicu.html">eICU-CRD tutorial</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="tutorials/eicu.html#Imports-and-instantiate-EICUQuerier">Imports and instantiate <code class="docutils literal notranslate"><span class="pre">EICUQuerier</span></code></a></li>
-<li class="toctree-l3"><a class="reference internal" href="tutorials/eicu.html#Example-1.-Get-all-female-patients-discharged-in-2014-(limit-to-100-rows).">Example 1. Get all female patients discharged in 2014 (limit to 100 rows).</a></li>
-<li class="toctree-l3"><a class="reference internal" href="tutorials/eicu.html#Example-2.-Get-all-patient-encounters-with-diagnoses-(schizophrenia-in-diagnosisstring),-discharged-in-the-year-2015.">Example 2. Get all patient encounters with diagnoses (<code class="docutils literal notranslate"><span class="pre">schizophrenia</span></code> in <code class="docutils literal notranslate"><span class="pre">diagnosisstring</span></code>), discharged in the year 2015.</a></li>
-<li class="toctree-l3"><a class="reference internal" href="tutorials/eicu.html#Example-3.-Get-potassium-lab-tests-for-patients-discharged-in-the-year-2014,-for-all-teaching-hospitals.">Example 3. Get potassium lab tests for patients discharged in the year 2014, for all teaching hospitals.</a></li>
-<li class="toctree-l3"><a class="reference internal" href="tutorials/eicu.html#Example-4.-Get-glucose-medications-(substring-search)-for-female-patients-discharged-in-2014.">Example 4. Get glucose medications (substring search) for female patients discharged in 2014.</a></li>
+<li class="toctree-l1"><a class="reference internal" href="tutorials/eicu.html">eICU-CRD tutorial</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/eicu.html#Imports-and-instantiate-EICUQuerier">Imports and instantiate <code class="docutils literal notranslate"><span class="pre">EICUQuerier</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/eicu.html#Example-1.-Get-all-female-patients-discharged-in-2014-(limit-to-100-rows).">Example 1. Get all female patients discharged in 2014 (limit to 100 rows).</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/eicu.html#Example-2.-Get-all-patient-encounters-with-diagnoses-(schizophrenia-in-diagnosisstring),-discharged-in-the-year-2015.">Example 2. Get all patient encounters with diagnoses (<code class="docutils literal notranslate"><span class="pre">schizophrenia</span></code> in <code class="docutils literal notranslate"><span class="pre">diagnosisstring</span></code>), discharged in the year 2015.</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/eicu.html#Example-3.-Get-potassium-lab-tests-for-patients-discharged-in-the-year-2014,-for-all-teaching-hospitals.">Example 3. Get potassium lab tests for patients discharged in the year 2014, for all teaching hospitals.</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/eicu.html#Example-4.-Get-glucose-medications-(substring-search)-for-female-patients-discharged-in-2014.">Example 4. Get glucose medications (substring search) for female patients discharged in 2014.</a></li>
 </ul>
 </li>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/omop.html">OMOP tutorial</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="tutorials/omop.html#Imports-and-instantiate-OMOPQuerier.">Imports and instantiate <code class="docutils literal notranslate"><span class="pre">OMOPQuerier</span></code>.</a></li>
-<li class="toctree-l3"><a class="reference internal" href="tutorials/omop.html#Example-1.-Get-all-patient-visits-in-or-after-2010.">Example 1. Get all patient visits in or after 2010.</a></li>
-<li class="toctree-l3"><a class="reference internal" href="tutorials/omop.html#Example-2.-Get-measurements-for-all-visits-in-or-after-2020.">Example 2. Get measurements for all visits in or after 2020.</a></li>
-<li class="toctree-l3"><a class="reference internal" href="tutorials/omop.html#id1">Imports and instantiate <code class="docutils literal notranslate"><span class="pre">OMOPQuerier</span></code>.</a></li>
-<li class="toctree-l3"><a class="reference internal" href="tutorials/omop.html#Example-1.-Get-all-patient-visits-that-ended-in-a-mortality-outcome-in-or-after-2010.">Example 1. Get all patient visits that ended in a mortality outcome in or after 2010.</a></li>
-<li class="toctree-l3"><a class="reference internal" href="tutorials/omop.html#Example-2.-Get-all-measurements-for-female-patient-visits-with-sepsis-diagnoses,-that-ended-in-a-mortality-outcome.">Example 2. Get all measurements for female patient visits with <code class="docutils literal notranslate"><span class="pre">sepsis</span></code> diagnoses, that ended in a mortality outcome.</a></li>
-</ul>
-</li>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/gemini.html">GEMINI tutorial</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="tutorials/gemini.html#Imports-and-instantiate-GEMINIQuerier.">Imports and instantiate <code class="docutils literal notranslate"><span class="pre">GEMINIQuerier</span></code>.</a></li>
-<li class="toctree-l3"><a class="reference internal" href="tutorials/gemini.html#Example-1a.-Create-a-table-with-only-one-hospitalization-per-patient,-keeping-the-most-recent-encounter-for-each-patient.-Sort-the-dataset-by-patient_id_hashed-and-discharge_date_time,-and-then-keep-the-recent-record.">Example 1a. Create a table with only one hospitalization per patient, keeping the most recent encounter for each patient. Sort the dataset by <code class="docutils literal notranslate"><span class="pre">patient_id_hashed</span></code> and <code class="docutils literal notranslate"><span class="pre">discharge_date_time</span></code>, and then keep the recent record.</a></li>
-<li class="toctree-l3"><a class="reference internal" href="tutorials/gemini.html#Example-1b.-From-the-above-set-of-encounters,-take-a-subset-of-patients-who-were-discharged-between-April-1,-2015-and-March-31,-2016.">Example 1b. From the above set of encounters, take a subset of patients who were discharged between April 1, 2015 and March 31, 2016.</a></li>
-<li class="toctree-l3"><a class="reference internal" href="tutorials/gemini.html#Example-1c.-From-the-above-set-of-encounters,-get-the-total-number-of-admissions-for-each-hospital.">Example 1c. From the above set of encounters, get the total number of admissions for each hospital.</a></li>
-<li class="toctree-l3"><a class="reference internal" href="tutorials/gemini.html#Example-2a.-How-many-sodium-tests-were-placed-between-Apr-1,-2015-and-May-31,-2015-at-hospital-101?">Example 2a. How many sodium tests were placed between Apr 1, 2015 and May 31, 2015 at hospital 101?</a></li>
+<li class="toctree-l1"><a class="reference internal" href="tutorials/omop.html">OMOP tutorial</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/omop.html#Imports-and-instantiate-OMOPQuerier.">Imports and instantiate <code class="docutils literal notranslate"><span class="pre">OMOPQuerier</span></code>.</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/omop.html#Example-1.-Get-all-patient-visits-in-or-after-2010.">Example 1. Get all patient visits in or after 2010.</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/omop.html#Example-2.-Get-measurements-for-all-visits-in-or-after-2020.">Example 2. Get measurements for all visits in or after 2020.</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/omop.html#id1">Imports and instantiate <code class="docutils literal notranslate"><span class="pre">OMOPQuerier</span></code>.</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/omop.html#Example-1.-Get-all-patient-visits-that-ended-in-a-mortality-outcome-in-or-after-2010.">Example 1. Get all patient visits that ended in a mortality outcome in or after 2010.</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/omop.html#Example-2.-Get-all-measurements-for-female-patient-visits-with-sepsis-diagnoses,-that-ended-in-a-mortality-outcome.">Example 2. Get all measurements for female patient visits with <code class="docutils literal notranslate"><span class="pre">sepsis</span></code> diagnoses, that ended in a mortality outcome.</a></li>
 </ul>
 </li>
+<li class="toctree-l1"><a class="reference internal" href="tutorials/gemini.html">GEMINI tutorial</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/gemini.html#Imports-and-instantiate-GEMINIQuerier.">Imports and instantiate <code class="docutils literal notranslate"><span class="pre">GEMINIQuerier</span></code>.</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/gemini.html#Example-1a.-Create-a-table-with-only-one-hospitalization-per-patient,-keeping-the-most-recent-encounter-for-each-patient.-Sort-the-dataset-by-patient_id_hashed-and-discharge_date_time,-and-then-keep-the-recent-record.">Example 1a. Create a table with only one hospitalization per patient, keeping the most recent encounter for each patient. Sort the dataset by <code class="docutils literal notranslate"><span class="pre">patient_id_hashed</span></code> and <code class="docutils literal notranslate"><span class="pre">discharge_date_time</span></code>, and then keep the recent record.</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/gemini.html#Example-1b.-From-the-above-set-of-encounters,-take-a-subset-of-patients-who-were-discharged-between-April-1,-2015-and-March-31,-2016.">Example 1b. From the above set of encounters, take a subset of patients who were discharged between April 1, 2015 and March 31, 2016.</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/gemini.html#Example-1c.-From-the-above-set-of-encounters,-get-the-total-number-of-admissions-for-each-hospital.">Example 1c. From the above set of encounters, get the total number of admissions for each hospital.</a></li>
+<li class="toctree-l2"><a class="reference internal" href="tutorials/gemini.html#Example-2a.-How-many-sodium-tests-were-placed-between-Apr-1,-2015-and-May-31,-2015-at-hospital-101?">Example 2a. How many sodium tests were placed between Apr 1, 2015 and May 31, 2015 at hospital 101?</a></li>
 </ul>
 </li>
 </ul>
@@ -146,19 +232,50 @@ <h1>Tutorials<a class="headerlink" href="#tutorials" title="Link to this heading
           </div>
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
         <a href="contributing.html" class="btn btn-neutral float-left" title="Contributing to cyclops-query" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
-        <a href="tutorials_query.html" class="btn btn-neutral float-right" title="query API" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+        <a href="tutorials/mimiciii.html" class="btn btn-neutral float-right" title="MIMIC-III tutorial" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
     </div>
 
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
+  </div>
+
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+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="_static/logos/gemini_logo.png" />
+    </a>
+  </div>
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+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/tutorials/eicu.html b/tutorials/eicu.html
index 157469f..9ebe99e 100644
--- a/tutorials/eicu.html
+++ b/tutorials/eicu.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -29,17 +36,78 @@
     <link rel="prev" title="MIMIC-IV tutorial" href="mimiciv.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -47,31 +115,30 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../intro.html#documentation">📚 Documentation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../intro.html#citation">🎓 Citation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contributing.html">Contributing to cyclops-query</a></li>
 <li class="toctree-l1 current"><a class="reference internal" href="../tutorials.html">Tutorials</a><ul class="current">
-<li class="toctree-l2 current"><a class="reference internal" href="../tutorials_query.html">query API</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="mimiciii.html">MIMIC-III tutorial</a></li>
-<li class="toctree-l3"><a class="reference internal" href="mimiciv.html">MIMIC-IV tutorial</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">eICU-CRD tutorial</a><ul>
-<li class="toctree-l4"><a class="reference internal" href="#Imports-and-instantiate-EICUQuerier">Imports and instantiate <code class="docutils literal notranslate"><span class="pre">EICUQuerier</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="#Example-1.-Get-all-female-patients-discharged-in-2014-(limit-to-100-rows).">Example 1. Get all female patients discharged in 2014 (limit to 100 rows).</a></li>
-<li class="toctree-l4"><a class="reference internal" href="#Example-2.-Get-all-patient-encounters-with-diagnoses-(schizophrenia-in-diagnosisstring),-discharged-in-the-year-2015.">Example 2. Get all patient encounters with diagnoses (<code class="docutils literal notranslate"><span class="pre">schizophrenia</span></code> in <code class="docutils literal notranslate"><span class="pre">diagnosisstring</span></code>), discharged in the year 2015.</a></li>
-<li class="toctree-l4"><a class="reference internal" href="#Example-3.-Get-potassium-lab-tests-for-patients-discharged-in-the-year-2014,-for-all-teaching-hospitals.">Example 3. Get potassium lab tests for patients discharged in the year 2014, for all teaching hospitals.</a></li>
-<li class="toctree-l4"><a class="reference internal" href="#Example-4.-Get-glucose-medications-(substring-search)-for-female-patients-discharged-in-2014.">Example 4. Get glucose medications (substring search) for female patients discharged in 2014.</a></li>
-</ul>
-</li>
-<li class="toctree-l3"><a class="reference internal" href="omop.html">OMOP tutorial</a></li>
-<li class="toctree-l3"><a class="reference internal" href="gemini.html">GEMINI tutorial</a></li>
+<li class="toctree-l2"><a class="reference internal" href="mimiciii.html">MIMIC-III tutorial</a></li>
+<li class="toctree-l2"><a class="reference internal" href="mimiciv.html">MIMIC-IV tutorial</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">eICU-CRD tutorial</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#Imports-and-instantiate-EICUQuerier">Imports and instantiate <code class="docutils literal notranslate"><span class="pre">EICUQuerier</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#Example-1.-Get-all-female-patients-discharged-in-2014-(limit-to-100-rows).">Example 1. Get all female patients discharged in 2014 (limit to 100 rows).</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#Example-2.-Get-all-patient-encounters-with-diagnoses-(schizophrenia-in-diagnosisstring),-discharged-in-the-year-2015.">Example 2. Get all patient encounters with diagnoses (<code class="docutils literal notranslate"><span class="pre">schizophrenia</span></code> in <code class="docutils literal notranslate"><span class="pre">diagnosisstring</span></code>), discharged in the year 2015.</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#Example-3.-Get-potassium-lab-tests-for-patients-discharged-in-the-year-2014,-for-all-teaching-hospitals.">Example 3. Get potassium lab tests for patients discharged in the year 2014, for all teaching hospitals.</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#Example-4.-Get-glucose-medications-(substring-search)-for-female-patients-discharged-in-2014.">Example 4. Get glucose medications (substring search) for female patients discharged in 2014.</a></li>
 </ul>
 </li>
+<li class="toctree-l2"><a class="reference internal" href="omop.html">OMOP tutorial</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gemini.html">GEMINI tutorial</a></li>
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="../api.html">API Reference</a></li>
@@ -90,10 +157,21 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../tutorials.html">Tutorials</a></li>
-          <li class="breadcrumb-item"><a href="../tutorials_query.html">query API</a></li>
-      <li class="breadcrumb-item active">eICU-CRD tutorial</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../tutorials.html">Tutorials</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../_sources/tutorials/eicu.ipynb.txt" rel="nofollow"> View page source</a>
       </li>
@@ -398,7 +476,7 @@ <h2>Imports and instantiate <code class="docutils literal notranslate"><span cla
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2023-10-20 13:09:52,623 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Database setup, ready to run queries!
+2023-10-24 12:02:56,995 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Database setup, ready to run queries!
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -462,8 +540,8 @@ <h2>Example 1. Get all female patients discharged in 2014 (limit to 100 rows).<a
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2023-10-20 13:09:53,474 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
-2023-10-20 13:09:53,475 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.038673 s
+2023-10-24 12:02:57,850 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2023-10-24 12:02:57,851 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.046734 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -498,8 +576,8 @@ <h2>Example 2. Get all patient encounters with diagnoses (<code class="docutils
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2023-10-20 13:09:53,575 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
-2023-10-20 13:09:53,576 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.077931 s
+2023-10-24 12:02:57,952 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2023-10-24 12:02:57,953 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.077589 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -540,8 +618,8 @@ <h2>Example 3. Get potassium lab tests for patients discharged in the year 2014,
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2023-10-20 13:09:53,647 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
-2023-10-20 13:09:53,648 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.039319 s
+2023-10-24 12:02:58,028 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2023-10-24 12:02:58,029 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.042372 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -580,8 +658,8 @@ <h2>Example 4. Get glucose medications (substring search) for female patients di
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2023-10-20 13:09:53,841 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
-2023-10-20 13:09:53,842 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.171093 s
+2023-10-24 12:02:58,222 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2023-10-24 12:02:58,223 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.174883 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -606,13 +684,44 @@ <h2>Example 4. Get glucose medications (substring search) for female patients di
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
+  </div>
+
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/tutorials/eicu.ipynb b/tutorials/eicu.ipynb
index 24f1d4e..ae63103 100644
--- a/tutorials/eicu.ipynb
+++ b/tutorials/eicu.ipynb
@@ -35,10 +35,10 @@
    "id": "75a140e0-fb27-4319-862f-be54397abe5c",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2023-10-20T17:09:51.086953Z",
-     "iopub.status.busy": "2023-10-20T17:09:51.086194Z",
-     "iopub.status.idle": "2023-10-20T17:09:53.421976Z",
-     "shell.execute_reply": "2023-10-20T17:09:53.420267Z"
+     "iopub.execute_input": "2023-10-24T16:02:55.469458Z",
+     "iopub.status.busy": "2023-10-24T16:02:55.468977Z",
+     "iopub.status.idle": "2023-10-24T16:02:57.789012Z",
+     "shell.execute_reply": "2023-10-24T16:02:57.787389Z"
     },
     "tags": []
    },
@@ -47,7 +47,7 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:09:52,623 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Database setup, ready to run queries!\n"
+      "2023-10-24 12:02:56,995 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Database setup, ready to run queries!\n"
      ]
     },
     {
@@ -124,10 +124,10 @@
    "id": "c1efa964-8978-4a0e-9892-5ea4ce9953a3",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2023-10-20T17:09:53.430263Z",
-     "iopub.status.busy": "2023-10-20T17:09:53.429661Z",
-     "iopub.status.idle": "2023-10-20T17:09:53.481086Z",
-     "shell.execute_reply": "2023-10-20T17:09:53.479892Z"
+     "iopub.execute_input": "2023-10-24T16:02:57.796116Z",
+     "iopub.status.busy": "2023-10-24T16:02:57.795249Z",
+     "iopub.status.idle": "2023-10-24T16:02:57.857192Z",
+     "shell.execute_reply": "2023-10-24T16:02:57.855768Z"
     },
     "tags": []
    },
@@ -136,14 +136,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:09:53,474 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2023-10-24 12:02:57,850 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:09:53,475 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.038673 s\n"
+      "2023-10-24 12:02:57,851 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.046734 s\n"
      ]
     },
     {
@@ -180,10 +180,10 @@
    "id": "a7ab5fa3-e26b-47a7-818f-1bf367a55760",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2023-10-20T17:09:53.488891Z",
-     "iopub.status.busy": "2023-10-20T17:09:53.488463Z",
-     "iopub.status.idle": "2023-10-20T17:09:53.580232Z",
-     "shell.execute_reply": "2023-10-20T17:09:53.579327Z"
+     "iopub.execute_input": "2023-10-24T16:02:57.863568Z",
+     "iopub.status.busy": "2023-10-24T16:02:57.862778Z",
+     "iopub.status.idle": "2023-10-24T16:02:57.956904Z",
+     "shell.execute_reply": "2023-10-24T16:02:57.955816Z"
     },
     "tags": []
    },
@@ -192,14 +192,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:09:53,575 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2023-10-24 12:02:57,952 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:09:53,576 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.077931 s\n"
+      "2023-10-24 12:02:57,953 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.077589 s\n"
      ]
     },
     {
@@ -236,10 +236,10 @@
    "id": "24043abc-1878-4e00-8229-36d4a0368b98",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2023-10-20T17:09:53.587427Z",
-     "iopub.status.busy": "2023-10-20T17:09:53.587013Z",
-     "iopub.status.idle": "2023-10-20T17:09:53.651298Z",
-     "shell.execute_reply": "2023-10-20T17:09:53.650491Z"
+     "iopub.execute_input": "2023-10-24T16:02:57.964760Z",
+     "iopub.status.busy": "2023-10-24T16:02:57.964077Z",
+     "iopub.status.idle": "2023-10-24T16:02:58.032789Z",
+     "shell.execute_reply": "2023-10-24T16:02:58.031800Z"
     },
     "tags": []
    },
@@ -248,14 +248,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:09:53,647 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2023-10-24 12:02:58,028 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:09:53,648 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.039319 s\n"
+      "2023-10-24 12:02:58,029 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.042372 s\n"
      ]
     },
     {
@@ -298,10 +298,10 @@
    "id": "f6142f27-e8d1-453c-bfe2-2265d9ff1914",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2023-10-20T17:09:53.658888Z",
-     "iopub.status.busy": "2023-10-20T17:09:53.658458Z",
-     "iopub.status.idle": "2023-10-20T17:09:53.848333Z",
-     "shell.execute_reply": "2023-10-20T17:09:53.846867Z"
+     "iopub.execute_input": "2023-10-24T16:02:58.037143Z",
+     "iopub.status.busy": "2023-10-24T16:02:58.036726Z",
+     "iopub.status.idle": "2023-10-24T16:02:58.228896Z",
+     "shell.execute_reply": "2023-10-24T16:02:58.227686Z"
     },
     "tags": []
    },
@@ -310,14 +310,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:09:53,841 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2023-10-24 12:02:58,222 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:09:53,842 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.171093 s\n"
+      "2023-10-24 12:02:58,223 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.174883 s\n"
      ]
     },
     {
diff --git a/tutorials/gemini.html b/tutorials/gemini.html
index b648eec..65b0c65 100644
--- a/tutorials/gemini.html
+++ b/tutorials/gemini.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -29,17 +36,78 @@
     <link rel="prev" title="OMOP tutorial" href="omop.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -47,29 +115,28 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../intro.html#documentation">📚 Documentation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../intro.html#citation">🎓 Citation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contributing.html">Contributing to cyclops-query</a></li>
 <li class="toctree-l1 current"><a class="reference internal" href="../tutorials.html">Tutorials</a><ul class="current">
-<li class="toctree-l2 current"><a class="reference internal" href="../tutorials_query.html">query API</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="mimiciii.html">MIMIC-III tutorial</a></li>
-<li class="toctree-l3"><a class="reference internal" href="mimiciv.html">MIMIC-IV tutorial</a></li>
-<li class="toctree-l3"><a class="reference internal" href="eicu.html">eICU-CRD tutorial</a></li>
-<li class="toctree-l3"><a class="reference internal" href="omop.html">OMOP tutorial</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">GEMINI tutorial</a><ul>
-<li class="toctree-l4"><a class="reference internal" href="#Imports-and-instantiate-GEMINIQuerier.">Imports and instantiate <code class="docutils literal notranslate"><span class="pre">GEMINIQuerier</span></code>.</a></li>
-<li class="toctree-l4"><a class="reference internal" href="#Example-1a.-Create-a-table-with-only-one-hospitalization-per-patient,-keeping-the-most-recent-encounter-for-each-patient.-Sort-the-dataset-by-patient_id_hashed-and-discharge_date_time,-and-then-keep-the-recent-record.">Example 1a. Create a table with only one hospitalization per patient, keeping the most recent encounter for each patient. Sort the dataset by <code class="docutils literal notranslate"><span class="pre">patient_id_hashed</span></code> and <code class="docutils literal notranslate"><span class="pre">discharge_date_time</span></code>, and then keep the recent record.</a></li>
-<li class="toctree-l4"><a class="reference internal" href="#Example-1b.-From-the-above-set-of-encounters,-take-a-subset-of-patients-who-were-discharged-between-April-1,-2015-and-March-31,-2016.">Example 1b. From the above set of encounters, take a subset of patients who were discharged between April 1, 2015 and March 31, 2016.</a></li>
-<li class="toctree-l4"><a class="reference internal" href="#Example-1c.-From-the-above-set-of-encounters,-get-the-total-number-of-admissions-for-each-hospital.">Example 1c. From the above set of encounters, get the total number of admissions for each hospital.</a></li>
-<li class="toctree-l4"><a class="reference internal" href="#Example-2a.-How-many-sodium-tests-were-placed-between-Apr-1,-2015-and-May-31,-2015-at-hospital-101?">Example 2a. How many sodium tests were placed between Apr 1, 2015 and May 31, 2015 at hospital 101?</a></li>
-</ul>
-</li>
+<li class="toctree-l2"><a class="reference internal" href="mimiciii.html">MIMIC-III tutorial</a></li>
+<li class="toctree-l2"><a class="reference internal" href="mimiciv.html">MIMIC-IV tutorial</a></li>
+<li class="toctree-l2"><a class="reference internal" href="eicu.html">eICU-CRD tutorial</a></li>
+<li class="toctree-l2"><a class="reference internal" href="omop.html">OMOP tutorial</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">GEMINI tutorial</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#Imports-and-instantiate-GEMINIQuerier.">Imports and instantiate <code class="docutils literal notranslate"><span class="pre">GEMINIQuerier</span></code>.</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#Example-1a.-Create-a-table-with-only-one-hospitalization-per-patient,-keeping-the-most-recent-encounter-for-each-patient.-Sort-the-dataset-by-patient_id_hashed-and-discharge_date_time,-and-then-keep-the-recent-record.">Example 1a. Create a table with only one hospitalization per patient, keeping the most recent encounter for each patient. Sort the dataset by <code class="docutils literal notranslate"><span class="pre">patient_id_hashed</span></code> and <code class="docutils literal notranslate"><span class="pre">discharge_date_time</span></code>, and then keep the recent record.</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#Example-1b.-From-the-above-set-of-encounters,-take-a-subset-of-patients-who-were-discharged-between-April-1,-2015-and-March-31,-2016.">Example 1b. From the above set of encounters, take a subset of patients who were discharged between April 1, 2015 and March 31, 2016.</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#Example-1c.-From-the-above-set-of-encounters,-get-the-total-number-of-admissions-for-each-hospital.">Example 1c. From the above set of encounters, get the total number of admissions for each hospital.</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#Example-2a.-How-many-sodium-tests-were-placed-between-Apr-1,-2015-and-May-31,-2015-at-hospital-101?">Example 2a. How many sodium tests were placed between Apr 1, 2015 and May 31, 2015 at hospital 101?</a></li>
 </ul>
 </li>
 </ul>
@@ -90,10 +157,21 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../tutorials.html">Tutorials</a></li>
-          <li class="breadcrumb-item"><a href="../tutorials_query.html">query API</a></li>
-      <li class="breadcrumb-item active">GEMINI tutorial</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../tutorials.html">Tutorials</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../_sources/tutorials/gemini.ipynb.txt" rel="nofollow"> View page source</a>
       </li>
@@ -600,13 +678,44 @@ <h2>Example 2a. How many sodium tests were placed between Apr 1, 2015 and May 31
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
+  </div>
+
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/tutorials/mimiciii.html b/tutorials/mimiciii.html
index 40e8b06..603d2ed 100644
--- a/tutorials/mimiciii.html
+++ b/tutorials/mimiciii.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -26,20 +33,81 @@
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
     <link rel="next" title="MIMIC-IV tutorial" href="mimiciv.html" />
-    <link rel="prev" title="query API" href="../tutorials_query.html" /> 
+    <link rel="prev" title="Tutorials" href="../tutorials.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -47,31 +115,30 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../intro.html#documentation">📚 Documentation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../intro.html#citation">🎓 Citation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contributing.html">Contributing to cyclops-query</a></li>
 <li class="toctree-l1 current"><a class="reference internal" href="../tutorials.html">Tutorials</a><ul class="current">
-<li class="toctree-l2 current"><a class="reference internal" href="../tutorials_query.html">query API</a><ul class="current">
-<li class="toctree-l3 current"><a class="current reference internal" href="#">MIMIC-III tutorial</a><ul>
-<li class="toctree-l4"><a class="reference internal" href="#Imports-and-instantiate-MIMICIIIQuerier">Imports and instantiate <code class="docutils literal notranslate"><span class="pre">MIMICIIIQuerier</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="#Example-1.-Get-all-male-patients-with-a-mortality-outcome.">Example 1. Get all male patients with a mortality outcome.</a></li>
-<li class="toctree-l4"><a class="reference internal" href="#Example-2.-Get-all-female-patient-encounters-with-diagnoses-(gastroenteritis-in-ICD-9-long-title).">Example 2. Get all female patient encounters with diagnoses (<code class="docutils literal notranslate"><span class="pre">gastroenteritis</span></code> in ICD-9 long title).</a></li>
-<li class="toctree-l4"><a class="reference internal" href="#Example-3.-Get-potassium-lab-tests-for-female-patients.">Example 3. Get potassium lab tests for female patients.</a></li>
-<li class="toctree-l4"><a class="reference internal" href="#Example-4.-Get-AaDO2-carevue-chart-events-for-male-patients-that-have-a-valuenum-of-less-than-20.">Example 4. Get AaDO2 carevue chart events for male patients that have a <code class="docutils literal notranslate"><span class="pre">valuenum</span></code> of less than 20.</a></li>
-</ul>
-</li>
-<li class="toctree-l3"><a class="reference internal" href="mimiciv.html">MIMIC-IV tutorial</a></li>
-<li class="toctree-l3"><a class="reference internal" href="eicu.html">eICU-CRD tutorial</a></li>
-<li class="toctree-l3"><a class="reference internal" href="omop.html">OMOP tutorial</a></li>
-<li class="toctree-l3"><a class="reference internal" href="gemini.html">GEMINI tutorial</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">MIMIC-III tutorial</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#Imports-and-instantiate-MIMICIIIQuerier">Imports and instantiate <code class="docutils literal notranslate"><span class="pre">MIMICIIIQuerier</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#Example-1.-Get-all-male-patients-with-a-mortality-outcome.">Example 1. Get all male patients with a mortality outcome.</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#Example-2.-Get-all-female-patient-encounters-with-diagnoses-(gastroenteritis-in-ICD-9-long-title).">Example 2. Get all female patient encounters with diagnoses (<code class="docutils literal notranslate"><span class="pre">gastroenteritis</span></code> in ICD-9 long title).</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#Example-3.-Get-potassium-lab-tests-for-female-patients.">Example 3. Get potassium lab tests for female patients.</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#Example-4.-Get-AaDO2-carevue-chart-events-for-male-patients-that-have-a-valuenum-of-less-than-20.">Example 4. Get AaDO2 carevue chart events for male patients that have a <code class="docutils literal notranslate"><span class="pre">valuenum</span></code> of less than 20.</a></li>
 </ul>
 </li>
+<li class="toctree-l2"><a class="reference internal" href="mimiciv.html">MIMIC-IV tutorial</a></li>
+<li class="toctree-l2"><a class="reference internal" href="eicu.html">eICU-CRD tutorial</a></li>
+<li class="toctree-l2"><a class="reference internal" href="omop.html">OMOP tutorial</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gemini.html">GEMINI tutorial</a></li>
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="../api.html">API Reference</a></li>
@@ -90,10 +157,21 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../tutorials.html">Tutorials</a></li>
-          <li class="breadcrumb-item"><a href="../tutorials_query.html">query API</a></li>
-      <li class="breadcrumb-item active">MIMIC-III tutorial</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../tutorials.html">Tutorials</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../_sources/tutorials/mimiciii.ipynb.txt" rel="nofollow"> View page source</a>
       </li>
@@ -398,7 +476,7 @@ <h2>Imports and instantiate <code class="docutils literal notranslate"><span cla
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2023-10-20 13:10:03,929 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Database setup, ready to run queries!
+2023-10-24 12:03:07,932 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Database setup, ready to run queries!
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -432,8 +510,8 @@ <h2>Example 1. Get all male patients with a mortality outcome.<a class="headerli
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2023-10-20 13:10:10,266 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
-2023-10-20 13:10:10,268 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.034715 s
+2023-10-24 12:03:14,662 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2023-10-24 12:03:14,663 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.033300 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -473,8 +551,8 @@ <h2>Example 2. Get all female patient encounters with diagnoses (<code class="do
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2023-10-20 13:10:10,397 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
-2023-10-20 13:10:10,398 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.096323 s
+2023-10-24 12:03:14,787 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2023-10-24 12:03:14,789 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.093197 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -506,8 +584,8 @@ <h2>Example 3. Get potassium lab tests for female patients.<a class="headerlink"
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2023-10-20 13:10:10,573 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
-2023-10-20 13:10:10,575 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.034577 s
+2023-10-24 12:03:14,950 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2023-10-24 12:03:14,951 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.029429 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -544,8 +622,8 @@ <h2>Example 4. Get AaDO2 carevue chart events for male patients that have a <cod
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2023-10-20 13:11:20,205 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
-2023-10-20 13:11:20,206 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 69.595252 s
+2023-10-24 12:04:24,012 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2023-10-24 12:04:24,014 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 69.033849 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -563,20 +641,51 @@ <h2>Example 4. Get AaDO2 carevue chart events for male patients that have a <cod
            </div>
           </div>
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
-        <a href="../tutorials_query.html" class="btn btn-neutral float-left" title="query API" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="../tutorials.html" class="btn btn-neutral float-left" title="Tutorials" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
         <a href="mimiciv.html" class="btn btn-neutral float-right" title="MIMIC-IV tutorial" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
     </div>
 
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
+  </div>
+
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/tutorials/mimiciii.ipynb b/tutorials/mimiciii.ipynb
index f8b59c1..27d0a18 100644
--- a/tutorials/mimiciii.ipynb
+++ b/tutorials/mimiciii.ipynb
@@ -35,10 +35,10 @@
    "id": "75a140e0-fb27-4319-862f-be54397abe5c",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2023-10-20T17:09:56.406184Z",
-     "iopub.status.busy": "2023-10-20T17:09:56.405690Z",
-     "iopub.status.idle": "2023-10-20T17:10:10.221925Z",
-     "shell.execute_reply": "2023-10-20T17:10:10.220429Z"
+     "iopub.execute_input": "2023-10-24T16:03:00.647061Z",
+     "iopub.status.busy": "2023-10-24T16:03:00.646576Z",
+     "iopub.status.idle": "2023-10-24T16:03:14.619188Z",
+     "shell.execute_reply": "2023-10-24T16:03:14.617238Z"
     },
     "tags": []
    },
@@ -47,7 +47,7 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:10:03,929 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Database setup, ready to run queries!\n"
+      "2023-10-24 12:03:07,932 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Database setup, ready to run queries!\n"
      ]
     },
     {
@@ -94,10 +94,10 @@
    "id": "c1efa964-8978-4a0e-9892-5ea4ce9953a3",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2023-10-20T17:10:10.226134Z",
-     "iopub.status.busy": "2023-10-20T17:10:10.225313Z",
-     "iopub.status.idle": "2023-10-20T17:10:10.273594Z",
-     "shell.execute_reply": "2023-10-20T17:10:10.272324Z"
+     "iopub.execute_input": "2023-10-24T16:03:14.625479Z",
+     "iopub.status.busy": "2023-10-24T16:03:14.624826Z",
+     "iopub.status.idle": "2023-10-24T16:03:14.670014Z",
+     "shell.execute_reply": "2023-10-24T16:03:14.668295Z"
     },
     "tags": []
    },
@@ -106,14 +106,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:10:10,266 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2023-10-24 12:03:14,662 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:10:10,268 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.034715 s\n"
+      "2023-10-24 12:03:14,663 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.033300 s\n"
      ]
     },
     {
@@ -150,10 +150,10 @@
    "id": "a7ab5fa3-e26b-47a7-818f-1bf367a55760",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2023-10-20T17:10:10.279557Z",
-     "iopub.status.busy": "2023-10-20T17:10:10.279011Z",
-     "iopub.status.idle": "2023-10-20T17:10:10.404065Z",
-     "shell.execute_reply": "2023-10-20T17:10:10.402719Z"
+     "iopub.execute_input": "2023-10-24T16:03:14.680967Z",
+     "iopub.status.busy": "2023-10-24T16:03:14.680600Z",
+     "iopub.status.idle": "2023-10-24T16:03:14.795188Z",
+     "shell.execute_reply": "2023-10-24T16:03:14.793686Z"
     },
     "tags": []
    },
@@ -162,14 +162,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:10:10,397 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2023-10-24 12:03:14,787 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:10:10,398 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.096323 s\n"
+      "2023-10-24 12:03:14,789 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.093197 s\n"
      ]
     },
     {
@@ -211,10 +211,10 @@
    "id": "24043abc-1878-4e00-8229-36d4a0368b98",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2023-10-20T17:10:10.410422Z",
-     "iopub.status.busy": "2023-10-20T17:10:10.409415Z",
-     "iopub.status.idle": "2023-10-20T17:10:10.580457Z",
-     "shell.execute_reply": "2023-10-20T17:10:10.579266Z"
+     "iopub.execute_input": "2023-10-24T16:03:14.802388Z",
+     "iopub.status.busy": "2023-10-24T16:03:14.802080Z",
+     "iopub.status.idle": "2023-10-24T16:03:14.954510Z",
+     "shell.execute_reply": "2023-10-24T16:03:14.953597Z"
     },
     "tags": []
    },
@@ -223,14 +223,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:10:10,573 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2023-10-24 12:03:14,950 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:10:10,575 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.034577 s\n"
+      "2023-10-24 12:03:14,951 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.029429 s\n"
      ]
     },
     {
@@ -264,10 +264,10 @@
    "id": "f6142f27-e8d1-453c-bfe2-2265d9ff1914",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2023-10-20T17:10:10.584803Z",
-     "iopub.status.busy": "2023-10-20T17:10:10.584374Z",
-     "iopub.status.idle": "2023-10-20T17:11:20.209879Z",
-     "shell.execute_reply": "2023-10-20T17:11:20.209235Z"
+     "iopub.execute_input": "2023-10-24T16:03:14.962672Z",
+     "iopub.status.busy": "2023-10-24T16:03:14.962369Z",
+     "iopub.status.idle": "2023-10-24T16:04:24.017281Z",
+     "shell.execute_reply": "2023-10-24T16:04:24.016671Z"
     },
     "tags": []
    },
@@ -276,14 +276,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:11:20,205 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2023-10-24 12:04:24,012 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:11:20,206 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 69.595252 s\n"
+      "2023-10-24 12:04:24,014 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 69.033849 s\n"
      ]
     },
     {
diff --git a/tutorials/mimiciv.html b/tutorials/mimiciv.html
index a620572..f5202e1 100644
--- a/tutorials/mimiciv.html
+++ b/tutorials/mimiciv.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -29,17 +36,78 @@
     <link rel="prev" title="MIMIC-III tutorial" href="mimiciii.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -47,35 +115,34 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../intro.html#documentation">📚 Documentation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../intro.html#citation">🎓 Citation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contributing.html">Contributing to cyclops-query</a></li>
 <li class="toctree-l1 current"><a class="reference internal" href="../tutorials.html">Tutorials</a><ul class="current">
-<li class="toctree-l2 current"><a class="reference internal" href="../tutorials_query.html">query API</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="mimiciii.html">MIMIC-III tutorial</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">MIMIC-IV tutorial</a><ul>
-<li class="toctree-l4"><a class="reference internal" href="#Imports-and-instantiate-MIMICIVQuerier">Imports and instantiate <code class="docutils literal notranslate"><span class="pre">MIMICIVQuerier</span></code></a></li>
-<li class="toctree-l4"><a class="reference internal" href="#Example-1.-Get-all-patient-admissions-from-2021-or-later-(approx-year-of-admission)">Example 1. Get all patient admissions from 2021 or later (approx year of admission)</a></li>
-<li class="toctree-l4"><a class="reference internal" href="#Example-2.-Get-all-patient-encounters-with-diagnoses-(schizophrenia-in-ICD-10-long-title),-in-the-year-2015.">Example 2. Get all patient encounters with diagnoses (<code class="docutils literal notranslate"><span class="pre">schizophrenia</span></code> in ICD-10 long title), in the year 2015.</a></li>
-<li class="toctree-l4"><a class="reference internal" href="#Example-3.-Advanced---uses-ConditionRegexMatch-from-cyclops.query.ops.-Get-all-patient-encounters-with-diagnoses-(ICD-9-long-title-contains-schizophrenia-and-chronic-),-in-the-year-2015.">Example 3. Advanced - uses <code class="docutils literal notranslate"><span class="pre">ConditionRegexMatch</span></code> from <code class="docutils literal notranslate"><span class="pre">cyclops.query.ops</span></code>. Get all patient encounters with diagnoses (ICD-9 long title contains <code class="docutils literal notranslate"><span class="pre">schizophrenia</span></code> and <code class="docutils literal notranslate"><span class="pre">chronic</span></code> ), in the year 2015.</a></li>
-<li class="toctree-l4"><a class="reference internal" href="#Example-4.-Get-routine-vital-signs-for-patients-from-year-2015.">Example 4. Get routine vital signs for patients from year 2015.</a></li>
-<li class="toctree-l4"><a class="reference internal" href="#Example-5.-Get-hemoglobin-lab-tests-for-patients-from-year-2009.">Example 5. Get hemoglobin lab tests for patients from year 2009.</a></li>
-<li class="toctree-l4"><a class="reference internal" href="#Example-6.-Get-radiology-reports-and-filter-on-keywords-lymphadenopathy-and-infectious-occurring-together-from-year-2009.">Example 6. Get radiology reports and filter on keywords <code class="docutils literal notranslate"><span class="pre">lymphadenopathy</span></code> and <code class="docutils literal notranslate"><span class="pre">infectious</span></code> occurring together from year 2009.</a></li>
-<li class="toctree-l4"><a class="reference internal" href="#Example-7.-Get-all-female-patient-encounters-from-year-2015,-and-return-as-dask-dataframe-(lazy-evaluation)-with-4-partitions-(batches)-aggregated-based-on-subject_id.">Example 7. Get all female patient encounters from year 2015, and return as dask dataframe (lazy evaluation) with 4 partitions (batches) aggregated based on <code class="docutils literal notranslate"><span class="pre">subject_id</span></code>.</a></li>
-<li class="toctree-l4"><a class="reference internal" href="#Example-8.-Running-a-raw-SQL-string.">Example 8. Running a raw SQL string.</a></li>
-</ul>
-</li>
-<li class="toctree-l3"><a class="reference internal" href="eicu.html">eICU-CRD tutorial</a></li>
-<li class="toctree-l3"><a class="reference internal" href="omop.html">OMOP tutorial</a></li>
-<li class="toctree-l3"><a class="reference internal" href="gemini.html">GEMINI tutorial</a></li>
+<li class="toctree-l2"><a class="reference internal" href="mimiciii.html">MIMIC-III tutorial</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">MIMIC-IV tutorial</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#Imports-and-instantiate-MIMICIVQuerier">Imports and instantiate <code class="docutils literal notranslate"><span class="pre">MIMICIVQuerier</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="#Example-1.-Get-all-patient-admissions-from-2021-or-later-(approx-year-of-admission)">Example 1. Get all patient admissions from 2021 or later (approx year of admission)</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#Example-2.-Get-all-patient-encounters-with-diagnoses-(schizophrenia-in-ICD-10-long-title),-in-the-year-2015.">Example 2. Get all patient encounters with diagnoses (<code class="docutils literal notranslate"><span class="pre">schizophrenia</span></code> in ICD-10 long title), in the year 2015.</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#Example-3.-Advanced---uses-ConditionRegexMatch-from-cyclops.query.ops.-Get-all-patient-encounters-with-diagnoses-(ICD-9-long-title-contains-schizophrenia-and-chronic-),-in-the-year-2015.">Example 3. Advanced - uses <code class="docutils literal notranslate"><span class="pre">ConditionRegexMatch</span></code> from <code class="docutils literal notranslate"><span class="pre">cyclops.query.ops</span></code>. Get all patient encounters with diagnoses (ICD-9 long title contains <code class="docutils literal notranslate"><span class="pre">schizophrenia</span></code> and <code class="docutils literal notranslate"><span class="pre">chronic</span></code> ), in the year 2015.</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#Example-4.-Get-routine-vital-signs-for-patients-from-year-2015.">Example 4. Get routine vital signs for patients from year 2015.</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#Example-5.-Get-hemoglobin-lab-tests-for-patients-from-year-2009.">Example 5. Get hemoglobin lab tests for patients from year 2009.</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#Example-6.-Get-radiology-reports-and-filter-on-keywords-lymphadenopathy-and-infectious-occurring-together-from-year-2009.">Example 6. Get radiology reports and filter on keywords <code class="docutils literal notranslate"><span class="pre">lymphadenopathy</span></code> and <code class="docutils literal notranslate"><span class="pre">infectious</span></code> occurring together from year 2009.</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#Example-7.-Get-all-female-patient-encounters-from-year-2015,-and-return-as-dask-dataframe-(lazy-evaluation)-with-4-partitions-(batches)-aggregated-based-on-subject_id.">Example 7. Get all female patient encounters from year 2015, and return as dask dataframe (lazy evaluation) with 4 partitions (batches) aggregated based on <code class="docutils literal notranslate"><span class="pre">subject_id</span></code>.</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#Example-8.-Running-a-raw-SQL-string.">Example 8. Running a raw SQL string.</a></li>
 </ul>
 </li>
+<li class="toctree-l2"><a class="reference internal" href="eicu.html">eICU-CRD tutorial</a></li>
+<li class="toctree-l2"><a class="reference internal" href="omop.html">OMOP tutorial</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gemini.html">GEMINI tutorial</a></li>
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="../api.html">API Reference</a></li>
@@ -94,10 +161,21 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../tutorials.html">Tutorials</a></li>
-          <li class="breadcrumb-item"><a href="../tutorials_query.html">query API</a></li>
-      <li class="breadcrumb-item active">MIMIC-IV tutorial</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../tutorials.html">Tutorials</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../_sources/tutorials/mimiciv.ipynb.txt" rel="nofollow"> View page source</a>
       </li>
@@ -402,7 +480,7 @@ <h2>Imports and instantiate <code class="docutils literal notranslate"><span cla
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2023-10-20 13:11:25,456 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Database setup, ready to run queries!
+2023-10-24 12:04:28,935 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Database setup, ready to run queries!
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -447,8 +525,8 @@ <h2>Example 1. Get all patient admissions from 2021 or later (approx year of adm
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2023-10-20 13:11:28,417 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
-2023-10-20 13:11:28,418 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.202027 s
+2023-10-24 12:04:31,911 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2023-10-24 12:04:31,912 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.195565 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -493,8 +571,8 @@ <h2>Example 2. Get all patient encounters with diagnoses (<code class="docutils
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2023-10-20 13:11:29,256 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
-2023-10-20 13:11:29,257 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.804190 s
+2023-10-24 12:04:32,783 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2023-10-24 12:04:32,784 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.829159 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -539,8 +617,8 @@ <h2>Example 3. Advanced - uses <code class="docutils literal notranslate"><span
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2023-10-20 13:11:30,796 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
-2023-10-20 13:11:30,798 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 1.499323 s
+2023-10-24 12:04:34,308 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2023-10-24 12:04:34,309 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 1.478343 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -581,8 +659,8 @@ <h2>Example 4. Get routine vital signs for patients from year 2015.<a class="hea
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2023-10-20 13:12:35,067 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
-2023-10-20 13:12:35,068 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 64.226223 s
+2023-10-24 12:05:31,716 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2023-10-24 12:05:31,718 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 57.367030 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -623,8 +701,8 @@ <h2>Example 5. Get hemoglobin lab tests for patients from year 2009.<a class="he
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2023-10-20 13:14:09,209 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
-2023-10-20 13:14:09,214 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 94.107667 s
+2023-10-24 12:06:41,950 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2023-10-24 12:06:41,954 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 70.196083 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -671,8 +749,8 @@ <h2>Example 6. Get radiology reports and filter on keywords <code class="docutil
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2023-10-20 13:14:28,452 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
-2023-10-20 13:14:28,452 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 19.199124 s
+2023-10-24 12:06:49,910 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2023-10-24 12:06:49,911 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 7.909914 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -716,8 +794,8 @@ <h2>Example 7. Get all female patient encounters from year 2015, and return as d
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2023-10-20 13:14:29,215 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
-2023-10-20 13:14:29,216 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.741771 s
+2023-10-24 12:06:50,354 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2023-10-24 12:06:50,355 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.415403 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -747,8 +825,8 @@ <h2>Example 8. Running a raw SQL string.<a class="headerlink" href="#Example-8.-
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2023-10-20 13:14:30,121 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
-2023-10-20 13:14:30,123 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.013796 s
+2023-10-24 12:06:51,173 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2023-10-24 12:06:51,174 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.011019 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -773,13 +851,44 @@ <h2>Example 8. Running a raw SQL string.<a class="headerlink" href="#Example-8.-
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
+  </div>
+
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/tutorials/mimiciv.ipynb b/tutorials/mimiciv.ipynb
index 820015e..604e155 100644
--- a/tutorials/mimiciv.ipynb
+++ b/tutorials/mimiciv.ipynb
@@ -35,10 +35,10 @@
    "id": "53009e6b",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2023-10-20T17:11:22.202958Z",
-     "iopub.status.busy": "2023-10-20T17:11:22.201837Z",
-     "iopub.status.idle": "2023-10-20T17:11:28.186109Z",
-     "shell.execute_reply": "2023-10-20T17:11:28.184297Z"
+     "iopub.execute_input": "2023-10-24T16:04:26.123574Z",
+     "iopub.status.busy": "2023-10-24T16:04:26.122924Z",
+     "iopub.status.idle": "2023-10-24T16:04:31.687092Z",
+     "shell.execute_reply": "2023-10-24T16:04:31.685502Z"
     },
     "tags": []
    },
@@ -47,7 +47,7 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:11:25,456 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Database setup, ready to run queries!\n"
+      "2023-10-24 12:04:28,935 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Database setup, ready to run queries!\n"
      ]
     },
     {
@@ -105,10 +105,10 @@
    "id": "cdfadaa4-6fd6-4fd7-85cf-e012aa0799e1",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2023-10-20T17:11:28.192584Z",
-     "iopub.status.busy": "2023-10-20T17:11:28.191750Z",
-     "iopub.status.idle": "2023-10-20T17:11:28.422750Z",
-     "shell.execute_reply": "2023-10-20T17:11:28.421674Z"
+     "iopub.execute_input": "2023-10-24T16:04:31.693946Z",
+     "iopub.status.busy": "2023-10-24T16:04:31.693218Z",
+     "iopub.status.idle": "2023-10-24T16:04:31.917809Z",
+     "shell.execute_reply": "2023-10-24T16:04:31.916491Z"
     }
    },
    "outputs": [
@@ -116,14 +116,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:11:28,417 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2023-10-24 12:04:31,911 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:11:28,418 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.202027 s\n"
+      "2023-10-24 12:04:31,912 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.195565 s\n"
      ]
     },
     {
@@ -160,10 +160,10 @@
    "id": "a89a9cf0",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2023-10-20T17:11:28.426886Z",
-     "iopub.status.busy": "2023-10-20T17:11:28.426457Z",
-     "iopub.status.idle": "2023-10-20T17:11:29.262972Z",
-     "shell.execute_reply": "2023-10-20T17:11:29.261690Z"
+     "iopub.execute_input": "2023-10-24T16:04:31.923515Z",
+     "iopub.status.busy": "2023-10-24T16:04:31.923027Z",
+     "iopub.status.idle": "2023-10-24T16:04:32.790280Z",
+     "shell.execute_reply": "2023-10-24T16:04:32.788889Z"
     }
    },
    "outputs": [
@@ -171,14 +171,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:11:29,256 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2023-10-24 12:04:32,783 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:11:29,257 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.804190 s\n"
+      "2023-10-24 12:04:32,784 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.829159 s\n"
      ]
     },
     {
@@ -225,10 +225,10 @@
    "id": "03936cee",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2023-10-20T17:11:29.268647Z",
-     "iopub.status.busy": "2023-10-20T17:11:29.268151Z",
-     "iopub.status.idle": "2023-10-20T17:11:30.804008Z",
-     "shell.execute_reply": "2023-10-20T17:11:30.802659Z"
+     "iopub.execute_input": "2023-10-24T16:04:32.796318Z",
+     "iopub.status.busy": "2023-10-24T16:04:32.795697Z",
+     "iopub.status.idle": "2023-10-24T16:04:34.314547Z",
+     "shell.execute_reply": "2023-10-24T16:04:34.313311Z"
     }
    },
    "outputs": [
@@ -236,14 +236,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:11:30,796 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2023-10-24 12:04:34,308 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:11:30,798 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 1.499323 s\n"
+      "2023-10-24 12:04:34,309 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 1.478343 s\n"
      ]
     },
     {
@@ -290,10 +290,10 @@
    "id": "56a72377",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2023-10-20T17:11:30.810128Z",
-     "iopub.status.busy": "2023-10-20T17:11:30.809623Z",
-     "iopub.status.idle": "2023-10-20T17:12:35.073982Z",
-     "shell.execute_reply": "2023-10-20T17:12:35.072980Z"
+     "iopub.execute_input": "2023-10-24T16:04:34.320471Z",
+     "iopub.status.busy": "2023-10-24T16:04:34.319978Z",
+     "iopub.status.idle": "2023-10-24T16:05:31.723454Z",
+     "shell.execute_reply": "2023-10-24T16:05:31.722058Z"
     }
    },
    "outputs": [
@@ -301,14 +301,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:12:35,067 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2023-10-24 12:05:31,716 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:12:35,068 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 64.226223 s\n"
+      "2023-10-24 12:05:31,718 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 57.367030 s\n"
      ]
     },
     {
@@ -351,10 +351,10 @@
    "id": "bce11f81",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2023-10-20T17:12:35.077609Z",
-     "iopub.status.busy": "2023-10-20T17:12:35.077160Z",
-     "iopub.status.idle": "2023-10-20T17:14:09.217810Z",
-     "shell.execute_reply": "2023-10-20T17:14:09.217009Z"
+     "iopub.execute_input": "2023-10-24T16:05:31.728384Z",
+     "iopub.status.busy": "2023-10-24T16:05:31.727403Z",
+     "iopub.status.idle": "2023-10-24T16:06:41.958135Z",
+     "shell.execute_reply": "2023-10-24T16:06:41.957089Z"
     }
    },
    "outputs": [
@@ -362,14 +362,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:14:09,209 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2023-10-24 12:06:41,950 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:14:09,214 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 94.107667 s\n"
+      "2023-10-24 12:06:41,954 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 70.196083 s\n"
      ]
     },
     {
@@ -412,10 +412,10 @@
    "id": "f00d270c-d78f-4dc0-8dae-ff4d52958c8b",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2023-10-20T17:14:09.233186Z",
-     "iopub.status.busy": "2023-10-20T17:14:09.232856Z",
-     "iopub.status.idle": "2023-10-20T17:14:28.456164Z",
-     "shell.execute_reply": "2023-10-20T17:14:28.455534Z"
+     "iopub.execute_input": "2023-10-24T16:06:41.972587Z",
+     "iopub.status.busy": "2023-10-24T16:06:41.972064Z",
+     "iopub.status.idle": "2023-10-24T16:06:49.915655Z",
+     "shell.execute_reply": "2023-10-24T16:06:49.914921Z"
     },
     "tags": []
    },
@@ -424,14 +424,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:14:28,452 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2023-10-24 12:06:49,910 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:14:28,452 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 19.199124 s\n"
+      "2023-10-24 12:06:49,911 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 7.909914 s\n"
      ]
     },
     {
@@ -480,10 +480,10 @@
    "id": "28683d70-376e-4d9b-883d-1a7de634e455",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2023-10-20T17:14:28.459171Z",
-     "iopub.status.busy": "2023-10-20T17:14:28.458758Z",
-     "iopub.status.idle": "2023-10-20T17:14:30.098374Z",
-     "shell.execute_reply": "2023-10-20T17:14:30.095670Z"
+     "iopub.execute_input": "2023-10-24T16:06:49.919683Z",
+     "iopub.status.busy": "2023-10-24T16:06:49.919289Z",
+     "iopub.status.idle": "2023-10-24T16:06:51.151760Z",
+     "shell.execute_reply": "2023-10-24T16:06:51.150255Z"
     }
    },
    "outputs": [
@@ -491,14 +491,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:14:29,215 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2023-10-24 12:06:50,354 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:14:29,216 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.741771 s\n"
+      "2023-10-24 12:06:50,355 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.415403 s\n"
      ]
     },
     {
@@ -546,10 +546,10 @@
    "id": "a853deec",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2023-10-20T17:14:30.105290Z",
-     "iopub.status.busy": "2023-10-20T17:14:30.104506Z",
-     "iopub.status.idle": "2023-10-20T17:14:30.128308Z",
-     "shell.execute_reply": "2023-10-20T17:14:30.126982Z"
+     "iopub.execute_input": "2023-10-24T16:06:51.161203Z",
+     "iopub.status.busy": "2023-10-24T16:06:51.160691Z",
+     "iopub.status.idle": "2023-10-24T16:06:51.179654Z",
+     "shell.execute_reply": "2023-10-24T16:06:51.178426Z"
     },
     "tags": []
    },
@@ -558,14 +558,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:14:30,121 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2023-10-24 12:06:51,173 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:14:30,123 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.013796 s\n"
+      "2023-10-24 12:06:51,174 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.011019 s\n"
      ]
     },
     {
diff --git a/tutorials/omop.html b/tutorials/omop.html
index b034c1e..49673d5 100644
--- a/tutorials/omop.html
+++ b/tutorials/omop.html
@@ -1,3 +1,9 @@
+
+
+
+
+
+
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../">
 <head>
@@ -8,6 +14,7 @@
     <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=80d5e7a1" />
     <link rel="stylesheet" type="text/css" href="../_static/css/cyclops.css?v=fc0e58c9" />
     <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
+    <link rel="shortcut icon" href="../_static/favicon.ico"/>
   <!--[if lt IE 9]>
     <script src="../_static/js/html5shiv.min.js"></script>
   <![endif]-->
@@ -29,17 +36,78 @@
     <link rel="prev" title="eICU-CRD tutorial" href="eicu.html" /> 
 </head>
 
-<body class="wy-body-for-nav"> 
+<body class="wy-body-for-nav">
+  <!--
+    Lie about what theme we really are when some RTD-injected JS fetches the
+    full versions panel from the RTD API.  RTD's JS replaces the stub versions
+    panel in the Sphinx-generated HTML with the full versions panel it fetches
+    from the RTD API.  If the API thinks we're not sphinx_rtd_theme, it will
+    serve us the wrong HTML and the panel will float as a "badge" when it
+    shouldn't.  As a customized version of sphinx_rtd_theme, we really do want
+    the same HTML it gets.  See also the diagnoses in
+    <https://github.com/nextstrain/docs.nextstrain.org/issues/76>.
+
+    This bit of JS finds the data RTD injects into the page and modifies it
+    before the code that RTD injects runs and looks at the data.  RTD's
+    <script>s (in <head>) run before this JS, but they wait until the DOM is
+    ready to actually do any work.  This gives us a chance to modify the data
+    during DOM load before the RTD code actually uses it.
+
+      -trs, 27 Jan 2022
+  -->
+  <script>
+    (() => {
+      try {
+        console.log("Lying about the theme to RTD's JS so the versions panel works properly. 🙈");
+
+        /* Update global variable, which is used in the request to get the RTD
+         * "footer" that includes the versions panel.
+         */
+        if (window.READTHEDOCS_DATA)
+          window.READTHEDOCS_DATA.theme = "sphinx_rtd_theme";
+
+        /* Update stored JSON in case anything else deserializes it later.
+         * Comments in the RTD-injected HTML source claim the global variable
+         * above is deprecated.
+         */
+        var script = document.querySelector("#READTHEDOCS_DATA");
+        if (script)
+          script.innerHTML = JSON.stringify({ ...JSON.parse(script.innerHTML), theme: "sphinx_rtd_theme" });
+      }
+      catch (err) {
+        console.log("Lying about the theme to RTD's JS failed… oh well. 🤷", err);
+      }
+    })();
+  </script>
+
   <div class="wy-grid-for-nav">
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
         <div class="wy-side-nav-search"  style="background: #efeeed" >
 
-          
-          
-          <a href="../index.html" class="icon icon-home">
-            cyclops-query
-          </a>
+
+
+
+  <a href="https://vectorinstitute.github.io/cyclops/">
+    <img src="../_static/cyclops_logo-dark.png" class="logo" alt="Logo"/>
+  </a>
+
+
+
+  <div class="subproject">
+    <a href="../index.html" class="project-name" alt="Documentation Home">
+      cyclops-query
+    </a>
+
+    
+    
+    
+
+  </div>
+
+
+
+
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -47,32 +115,31 @@
     <input type="hidden" name="area" value="default" />
   </form>
 </div>
+
+
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
-<li class="toctree-l1"><a class="reference internal" href="../intro.html"># cyclops-query</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../intro.html">cyclops-query</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../intro.html#getting-started">🐣 Getting Started</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../intro.html#developing">🧑🏿‍💻 Developing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../intro.html#documentation">📚 Documentation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../intro.html#citation">🎓 Citation</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../contributing.html">Contributing to cyclops-query</a></li>
 <li class="toctree-l1 current"><a class="reference internal" href="../tutorials.html">Tutorials</a><ul class="current">
-<li class="toctree-l2 current"><a class="reference internal" href="../tutorials_query.html">query API</a><ul class="current">
-<li class="toctree-l3"><a class="reference internal" href="mimiciii.html">MIMIC-III tutorial</a></li>
-<li class="toctree-l3"><a class="reference internal" href="mimiciv.html">MIMIC-IV tutorial</a></li>
-<li class="toctree-l3"><a class="reference internal" href="eicu.html">eICU-CRD tutorial</a></li>
-<li class="toctree-l3 current"><a class="current reference internal" href="#">OMOP tutorial</a><ul>
-<li class="toctree-l4"><a class="reference internal" href="#Imports-and-instantiate-OMOPQuerier.">Imports and instantiate <code class="docutils literal notranslate"><span class="pre">OMOPQuerier</span></code>.</a></li>
-<li class="toctree-l4"><a class="reference internal" href="#Example-1.-Get-all-patient-visits-in-or-after-2010.">Example 1. Get all patient visits in or after 2010.</a></li>
-<li class="toctree-l4"><a class="reference internal" href="#Example-2.-Get-measurements-for-all-visits-in-or-after-2020.">Example 2. Get measurements for all visits in or after 2020.</a></li>
-<li class="toctree-l4"><a class="reference internal" href="#id1">Imports and instantiate <code class="docutils literal notranslate"><span class="pre">OMOPQuerier</span></code>.</a></li>
-<li class="toctree-l4"><a class="reference internal" href="#Example-1.-Get-all-patient-visits-that-ended-in-a-mortality-outcome-in-or-after-2010.">Example 1. Get all patient visits that ended in a mortality outcome in or after 2010.</a></li>
-<li class="toctree-l4"><a class="reference internal" href="#Example-2.-Get-all-measurements-for-female-patient-visits-with-sepsis-diagnoses,-that-ended-in-a-mortality-outcome.">Example 2. Get all measurements for female patient visits with <code class="docutils literal notranslate"><span class="pre">sepsis</span></code> diagnoses, that ended in a mortality outcome.</a></li>
-</ul>
-</li>
-<li class="toctree-l3"><a class="reference internal" href="gemini.html">GEMINI tutorial</a></li>
+<li class="toctree-l2"><a class="reference internal" href="mimiciii.html">MIMIC-III tutorial</a></li>
+<li class="toctree-l2"><a class="reference internal" href="mimiciv.html">MIMIC-IV tutorial</a></li>
+<li class="toctree-l2"><a class="reference internal" href="eicu.html">eICU-CRD tutorial</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">OMOP tutorial</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#Imports-and-instantiate-OMOPQuerier.">Imports and instantiate <code class="docutils literal notranslate"><span class="pre">OMOPQuerier</span></code>.</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#Example-1.-Get-all-patient-visits-in-or-after-2010.">Example 1. Get all patient visits in or after 2010.</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#Example-2.-Get-measurements-for-all-visits-in-or-after-2020.">Example 2. Get measurements for all visits in or after 2020.</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#id1">Imports and instantiate <code class="docutils literal notranslate"><span class="pre">OMOPQuerier</span></code>.</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#Example-1.-Get-all-patient-visits-that-ended-in-a-mortality-outcome-in-or-after-2010.">Example 1. Get all patient visits that ended in a mortality outcome in or after 2010.</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#Example-2.-Get-all-measurements-for-female-patient-visits-with-sepsis-diagnoses,-that-ended-in-a-mortality-outcome.">Example 2. Get all measurements for female patient visits with <code class="docutils literal notranslate"><span class="pre">sepsis</span></code> diagnoses, that ended in a mortality outcome.</a></li>
 </ul>
 </li>
+<li class="toctree-l2"><a class="reference internal" href="gemini.html">GEMINI tutorial</a></li>
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="../api.html">API Reference</a></li>
@@ -91,10 +158,21 @@
         <div class="rst-content">
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
-      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
-          <li class="breadcrumb-item"><a href="../tutorials.html">Tutorials</a></li>
-          <li class="breadcrumb-item"><a href="../tutorials_query.html">query API</a></li>
-      <li class="breadcrumb-item active">OMOP tutorial</li>
+  
+
+  
+  
+    <li><a href="https://vectorinstitute.github.io/cyclops/">Home</a></li>
+    <li><a href="../index.html">cyclops-query</a></li>
+  
+
+  
+  
+    <li><a href="../tutorials.html">Tutorials</a></li>
+  
+
+  
+
       <li class="wy-breadcrumbs-aside">
             <a href="../_sources/tutorials/omop.ipynb.txt" rel="nofollow"> View page source</a>
       </li>
@@ -407,7 +485,7 @@ <h2>Imports and instantiate <code class="docutils literal notranslate"><span cla
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2023-10-20 13:14:34,469 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Database setup, ready to run queries!
+2023-10-24 12:06:55,472 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Database setup, ready to run queries!
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -481,8 +559,8 @@ <h2>Example 1. Get all patient visits in or after 2010.<a class="headerlink" hre
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2023-10-20 13:14:35,527 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
-2023-10-20 13:14:35,529 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.167826 s
+2023-10-24 12:06:56,982 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2023-10-24 12:06:56,984 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.076426 s
 </pre></div></div>
 </div>
 <div class="nboutput docutils container">
@@ -539,8 +617,8 @@ <h2>Example 2. Get measurements for all visits in or after 2020.<a class="header
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2023-10-20 13:14:35,699 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
-2023-10-20 13:14:35,701 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.127286 s
+2023-10-24 12:06:57,108 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2023-10-24 12:06:57,110 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.059829 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -586,7 +664,7 @@ <h2>Imports and instantiate <code class="docutils literal notranslate"><span cla
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2023-10-20 13:14:39,609 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Database setup, ready to run queries!
+2023-10-24 12:07:02,891 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Database setup, ready to run queries!
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -626,8 +704,8 @@ <h2>Example 1. Get all patient visits that ended in a mortality outcome in or af
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2023-10-20 13:14:47,017 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
-2023-10-20 13:14:47,018 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 2.166502 s
+2023-10-24 12:07:10,742 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2023-10-24 12:07:10,743 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.934626 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -683,8 +761,8 @@ <h2>Example 2. Get all measurements for female patient visits with <code class="
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2023-10-20 13:15:04,877 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
-2023-10-20 13:15:04,878 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 17.794520 s
+2023-10-24 12:07:27,065 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2023-10-24 12:07:27,066 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 16.252217 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -728,13 +806,44 @@ <h2>Example 2. Get all measurements for female patient visits with <code class="
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2022, Vector AI Engineering.</p>
+    <p></p>
+  </div>
+
+  
+
+  <div class="footer-small-text">
+    All <a href="https://github.com/VectorInstitute/cyclops">source code for cyclops</a> is freely available under the terms of an <a href="https://opensource.org/licenses/Apache-2.0">Apache-2.0</a> license.
+  </div>
+
+  <div class="footer-small-text">
+      This work is made possible due to the data obtained from the <a href="https://www.geminimedicine.ca/">GEMINI study</a>.
   </div>
 
-  Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
-    <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
-    provided by <a href="https://readthedocs.org">Read the Docs</a>.
-   
+  <hr/>
+
+  <div class="logo">
+    <a class="logo" href="https://vectorinstitute.ai/">
+      <span class="logo"></span>
+      <img alt="Logo of the Vector Institute" style="width:90px; max-width:90px;" src="../_static/logos/vector_logo.png" />
+    </a>
+    <a class="logo" href="https://www.geminimedicine.ca/">
+      <span class="logo"></span>
+      <img alt="Logo of GEMINI" style="width:90px; max-width:90px;" src="../_static/logos/gemini_logo.png" />
+    </a>
+  </div>
+
+  <div class="copyright">
+    &copy; Copyright 2022, Vector AI Engineering
+  </div>
+
+  <div class="copyright">
+    </p>
+    Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using customised version of
+    <a href="https://github.com/readthedocs/sphinx_rtd_theme">base theme</a> provided by
+    <a href="https://readthedocs.org">Read the Docs</a>.
+  </div>
+
+
 
 </footer>
         </div>
diff --git a/tutorials/omop.ipynb b/tutorials/omop.ipynb
index 1aa829f..7c7b3f7 100644
--- a/tutorials/omop.ipynb
+++ b/tutorials/omop.ipynb
@@ -45,10 +45,10 @@
    "id": "53009e6b",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2023-10-20T17:14:32.785701Z",
-     "iopub.status.busy": "2023-10-20T17:14:32.785177Z",
-     "iopub.status.idle": "2023-10-20T17:14:35.336016Z",
-     "shell.execute_reply": "2023-10-20T17:14:35.334299Z"
+     "iopub.execute_input": "2023-10-24T16:06:53.900831Z",
+     "iopub.status.busy": "2023-10-24T16:06:53.900232Z",
+     "iopub.status.idle": "2023-10-24T16:06:56.872059Z",
+     "shell.execute_reply": "2023-10-24T16:06:56.870341Z"
     }
    },
    "outputs": [
@@ -56,7 +56,7 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:14:34,469 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Database setup, ready to run queries!\n"
+      "2023-10-24 12:06:55,472 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Database setup, ready to run queries!\n"
      ]
     },
     {
@@ -150,10 +150,10 @@
    "id": "3a3d9cb9-fe40-45b8-ba2f-8de52a3b7f4f",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2023-10-20T17:14:35.340889Z",
-     "iopub.status.busy": "2023-10-20T17:14:35.340133Z",
-     "iopub.status.idle": "2023-10-20T17:14:35.541484Z",
-     "shell.execute_reply": "2023-10-20T17:14:35.540800Z"
+     "iopub.execute_input": "2023-10-24T16:06:56.881713Z",
+     "iopub.status.busy": "2023-10-24T16:06:56.880608Z",
+     "iopub.status.idle": "2023-10-24T16:06:57.001898Z",
+     "shell.execute_reply": "2023-10-24T16:06:57.000893Z"
     }
    },
    "outputs": [
@@ -161,14 +161,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:14:35,527 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2023-10-24 12:06:56,982 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:14:35,529 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.167826 s\n"
+      "2023-10-24 12:06:56,984 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.076426 s\n"
      ]
     },
     {
@@ -225,10 +225,10 @@
    "id": "030e2491-a7cc-42f3-a1ca-618212b3524c",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2023-10-20T17:14:35.545021Z",
-     "iopub.status.busy": "2023-10-20T17:14:35.544689Z",
-     "iopub.status.idle": "2023-10-20T17:14:35.706099Z",
-     "shell.execute_reply": "2023-10-20T17:14:35.704959Z"
+     "iopub.execute_input": "2023-10-24T16:06:57.013456Z",
+     "iopub.status.busy": "2023-10-24T16:06:57.013058Z",
+     "iopub.status.idle": "2023-10-24T16:06:57.115094Z",
+     "shell.execute_reply": "2023-10-24T16:06:57.114049Z"
     }
    },
    "outputs": [
@@ -236,14 +236,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:14:35,699 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2023-10-24 12:06:57,108 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:14:35,701 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.127286 s\n"
+      "2023-10-24 12:06:57,110 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.059829 s\n"
      ]
     },
     {
@@ -301,10 +301,10 @@
    "id": "0622b3df-2864-4f32-bd98-806019f59c50",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2023-10-20T17:14:35.710639Z",
-     "iopub.status.busy": "2023-10-20T17:14:35.709930Z",
-     "iopub.status.idle": "2023-10-20T17:14:44.822264Z",
-     "shell.execute_reply": "2023-10-20T17:14:44.821518Z"
+     "iopub.execute_input": "2023-10-24T16:06:57.123937Z",
+     "iopub.status.busy": "2023-10-24T16:06:57.123434Z",
+     "iopub.status.idle": "2023-10-24T16:07:09.765594Z",
+     "shell.execute_reply": "2023-10-24T16:07:09.763553Z"
     },
     "tags": []
    },
@@ -313,7 +313,7 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:14:39,609 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Database setup, ready to run queries!\n"
+      "2023-10-24 12:07:02,891 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Database setup, ready to run queries!\n"
      ]
     },
     {
@@ -355,10 +355,10 @@
    "id": "40ff2e83-75e4-4119-aa33-26f95e63ddaa",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2023-10-20T17:14:44.825968Z",
-     "iopub.status.busy": "2023-10-20T17:14:44.825729Z",
-     "iopub.status.idle": "2023-10-20T17:14:47.021829Z",
-     "shell.execute_reply": "2023-10-20T17:14:47.021156Z"
+     "iopub.execute_input": "2023-10-24T16:07:09.773406Z",
+     "iopub.status.busy": "2023-10-24T16:07:09.772828Z",
+     "iopub.status.idle": "2023-10-24T16:07:10.748012Z",
+     "shell.execute_reply": "2023-10-24T16:07:10.747148Z"
     },
     "tags": []
    },
@@ -367,14 +367,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:14:47,017 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2023-10-24 12:07:10,742 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:14:47,018 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 2.166502 s\n"
+      "2023-10-24 12:07:10,743 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.934626 s\n"
      ]
     },
     {
@@ -417,10 +417,10 @@
    "id": "46fd771c-5da7-4bce-aec7-08a5210a069b",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2023-10-20T17:14:47.025497Z",
-     "iopub.status.busy": "2023-10-20T17:14:47.025162Z",
-     "iopub.status.idle": "2023-10-20T17:15:04.882641Z",
-     "shell.execute_reply": "2023-10-20T17:15:04.881801Z"
+     "iopub.execute_input": "2023-10-24T16:07:10.756484Z",
+     "iopub.status.busy": "2023-10-24T16:07:10.756157Z",
+     "iopub.status.idle": "2023-10-24T16:07:27.072493Z",
+     "shell.execute_reply": "2023-10-24T16:07:27.071426Z"
     },
     "tags": []
    },
@@ -429,14 +429,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:15:04,877 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2023-10-24 12:07:27,065 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2023-10-20 13:15:04,878 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 17.794520 s\n"
+      "2023-10-24 12:07:27,066 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 16.252217 s\n"
      ]
     },
     {
@@ -486,10 +486,10 @@
    "id": "d20a2581-f613-4ab8-9feb-3e84b8835db1",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2023-10-20T17:15:04.889598Z",
-     "iopub.status.busy": "2023-10-20T17:15:04.889177Z",
-     "iopub.status.idle": "2023-10-20T17:15:04.899895Z",
-     "shell.execute_reply": "2023-10-20T17:15:04.898713Z"
+     "iopub.execute_input": "2023-10-24T16:07:27.082494Z",
+     "iopub.status.busy": "2023-10-24T16:07:27.082089Z",
+     "iopub.status.idle": "2023-10-24T16:07:27.094144Z",
+     "shell.execute_reply": "2023-10-24T16:07:27.092557Z"
     },
     "tags": []
    },
diff --git a/tutorials_query.html b/tutorials_query.html
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-  <section id="query-api">
-<h1>query API<a class="headerlink" href="#query-api" title="Link to this heading"></a></h1>
-<p>The query API allows you to query EHR databases. It is a Python API that
-that communicates with postgresql databases. It is a wrapper around the
-SQLAlchemy ORM and uses SQLAlchemy query objects and functions to build
-queries.</p>
-<div class="toctree-wrapper compound">
-<ul>
-<li class="toctree-l1"><a class="reference internal" href="tutorials/mimiciii.html">MIMIC-III tutorial</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciii.html#Imports-and-instantiate-MIMICIIIQuerier">Imports and instantiate <code class="docutils literal notranslate"><span class="pre">MIMICIIIQuerier</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciii.html#Example-1.-Get-all-male-patients-with-a-mortality-outcome.">Example 1. Get all male patients with a mortality outcome.</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciii.html#Example-2.-Get-all-female-patient-encounters-with-diagnoses-(gastroenteritis-in-ICD-9-long-title).">Example 2. Get all female patient encounters with diagnoses (<code class="docutils literal notranslate"><span class="pre">gastroenteritis</span></code> in ICD-9 long title).</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciii.html#Example-3.-Get-potassium-lab-tests-for-female-patients.">Example 3. Get potassium lab tests for female patients.</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciii.html#Example-4.-Get-AaDO2-carevue-chart-events-for-male-patients-that-have-a-valuenum-of-less-than-20.">Example 4. Get AaDO2 carevue chart events for male patients that have a <code class="docutils literal notranslate"><span class="pre">valuenum</span></code> of less than 20.</a></li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="tutorials/mimiciv.html">MIMIC-IV tutorial</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciv.html#Imports-and-instantiate-MIMICIVQuerier">Imports and instantiate <code class="docutils literal notranslate"><span class="pre">MIMICIVQuerier</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciv.html#Example-1.-Get-all-patient-admissions-from-2021-or-later-(approx-year-of-admission)">Example 1. Get all patient admissions from 2021 or later (approx year of admission)</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciv.html#Example-2.-Get-all-patient-encounters-with-diagnoses-(schizophrenia-in-ICD-10-long-title),-in-the-year-2015.">Example 2. Get all patient encounters with diagnoses (<code class="docutils literal notranslate"><span class="pre">schizophrenia</span></code> in ICD-10 long title), in the year 2015.</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciv.html#Example-3.-Advanced---uses-ConditionRegexMatch-from-cyclops.query.ops.-Get-all-patient-encounters-with-diagnoses-(ICD-9-long-title-contains-schizophrenia-and-chronic-),-in-the-year-2015.">Example 3. Advanced - uses <code class="docutils literal notranslate"><span class="pre">ConditionRegexMatch</span></code> from <code class="docutils literal notranslate"><span class="pre">cyclops.query.ops</span></code>. Get all patient encounters with diagnoses (ICD-9 long title contains <code class="docutils literal notranslate"><span class="pre">schizophrenia</span></code> and <code class="docutils literal notranslate"><span class="pre">chronic</span></code> ), in the year 2015.</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciv.html#Example-4.-Get-routine-vital-signs-for-patients-from-year-2015.">Example 4. Get routine vital signs for patients from year 2015.</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciv.html#Example-5.-Get-hemoglobin-lab-tests-for-patients-from-year-2009.">Example 5. Get hemoglobin lab tests for patients from year 2009.</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciv.html#Example-6.-Get-radiology-reports-and-filter-on-keywords-lymphadenopathy-and-infectious-occurring-together-from-year-2009.">Example 6. Get radiology reports and filter on keywords <code class="docutils literal notranslate"><span class="pre">lymphadenopathy</span></code> and <code class="docutils literal notranslate"><span class="pre">infectious</span></code> occurring together from year 2009.</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciv.html#Example-7.-Get-all-female-patient-encounters-from-year-2015,-and-return-as-dask-dataframe-(lazy-evaluation)-with-4-partitions-(batches)-aggregated-based-on-subject_id.">Example 7. Get all female patient encounters from year 2015, and return as dask dataframe (lazy evaluation) with 4 partitions (batches) aggregated based on <code class="docutils literal notranslate"><span class="pre">subject_id</span></code>.</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/mimiciv.html#Example-8.-Running-a-raw-SQL-string.">Example 8. Running a raw SQL string.</a></li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="tutorials/eicu.html">eICU-CRD tutorial</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/eicu.html#Imports-and-instantiate-EICUQuerier">Imports and instantiate <code class="docutils literal notranslate"><span class="pre">EICUQuerier</span></code></a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/eicu.html#Example-1.-Get-all-female-patients-discharged-in-2014-(limit-to-100-rows).">Example 1. Get all female patients discharged in 2014 (limit to 100 rows).</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/eicu.html#Example-2.-Get-all-patient-encounters-with-diagnoses-(schizophrenia-in-diagnosisstring),-discharged-in-the-year-2015.">Example 2. Get all patient encounters with diagnoses (<code class="docutils literal notranslate"><span class="pre">schizophrenia</span></code> in <code class="docutils literal notranslate"><span class="pre">diagnosisstring</span></code>), discharged in the year 2015.</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/eicu.html#Example-3.-Get-potassium-lab-tests-for-patients-discharged-in-the-year-2014,-for-all-teaching-hospitals.">Example 3. Get potassium lab tests for patients discharged in the year 2014, for all teaching hospitals.</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/eicu.html#Example-4.-Get-glucose-medications-(substring-search)-for-female-patients-discharged-in-2014.">Example 4. Get glucose medications (substring search) for female patients discharged in 2014.</a></li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="tutorials/omop.html">OMOP tutorial</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/omop.html#Imports-and-instantiate-OMOPQuerier.">Imports and instantiate <code class="docutils literal notranslate"><span class="pre">OMOPQuerier</span></code>.</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/omop.html#Example-1.-Get-all-patient-visits-in-or-after-2010.">Example 1. Get all patient visits in or after 2010.</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/omop.html#Example-2.-Get-measurements-for-all-visits-in-or-after-2020.">Example 2. Get measurements for all visits in or after 2020.</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/omop.html#id1">Imports and instantiate <code class="docutils literal notranslate"><span class="pre">OMOPQuerier</span></code>.</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/omop.html#Example-1.-Get-all-patient-visits-that-ended-in-a-mortality-outcome-in-or-after-2010.">Example 1. Get all patient visits that ended in a mortality outcome in or after 2010.</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/omop.html#Example-2.-Get-all-measurements-for-female-patient-visits-with-sepsis-diagnoses,-that-ended-in-a-mortality-outcome.">Example 2. Get all measurements for female patient visits with <code class="docutils literal notranslate"><span class="pre">sepsis</span></code> diagnoses, that ended in a mortality outcome.</a></li>
-</ul>
-</li>
-<li class="toctree-l1"><a class="reference internal" href="tutorials/gemini.html">GEMINI tutorial</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/gemini.html#Imports-and-instantiate-GEMINIQuerier.">Imports and instantiate <code class="docutils literal notranslate"><span class="pre">GEMINIQuerier</span></code>.</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/gemini.html#Example-1a.-Create-a-table-with-only-one-hospitalization-per-patient,-keeping-the-most-recent-encounter-for-each-patient.-Sort-the-dataset-by-patient_id_hashed-and-discharge_date_time,-and-then-keep-the-recent-record.">Example 1a. Create a table with only one hospitalization per patient, keeping the most recent encounter for each patient. Sort the dataset by <code class="docutils literal notranslate"><span class="pre">patient_id_hashed</span></code> and <code class="docutils literal notranslate"><span class="pre">discharge_date_time</span></code>, and then keep the recent record.</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/gemini.html#Example-1b.-From-the-above-set-of-encounters,-take-a-subset-of-patients-who-were-discharged-between-April-1,-2015-and-March-31,-2016.">Example 1b. From the above set of encounters, take a subset of patients who were discharged between April 1, 2015 and March 31, 2016.</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/gemini.html#Example-1c.-From-the-above-set-of-encounters,-get-the-total-number-of-admissions-for-each-hospital.">Example 1c. From the above set of encounters, get the total number of admissions for each hospital.</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorials/gemini.html#Example-2a.-How-many-sodium-tests-were-placed-between-Apr-1,-2015-and-May-31,-2015-at-hospital-101?">Example 2a. How many sodium tests were placed between Apr 1, 2015 and May 31, 2015 at hospital 101?</a></li>
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