diff --git a/searchindex.js b/searchindex.js
index 6520925..b2887ab 100644
--- a/searchindex.js
+++ b/searchindex.js
@@ -1 +1 @@
-Search.setIndex({"alltitles": {"API Reference": [[0, "api-reference"]], "Coding guidelines": [[1, "coding-guidelines"]], "Contents:": [[2, null]], "Contributing": [[3, "contributing"]], "Contributing to cycquery": [[1, "contributing-to-cycquery"]], "Example 1. Get all female patients discharged in 2014 (limit to 100 rows).": [[64, "Example-1.-Get-all-female-patients-discharged-in-2014-(limit-to-100-rows)."]], "Example 1. Get all male patients with a mortality outcome.": [[66, "Example-1.-Get-all-male-patients-with-a-mortality-outcome."]], "Example 1. Get all patient admissions from 2021 or later (approx year of admission)": [[67, "Example-1.-Get-all-patient-admissions-from-2021-or-later-(approx-year-of-admission)"]], "Example 1. Get all patient visits in or after 2010.": [[68, "Example-1.-Get-all-patient-visits-in-or-after-2010."]], "Example 1. Get all patient visits that ended in a mortality outcome in or after 2010.": [[68, "Example-1.-Get-all-patient-visits-that-ended-in-a-mortality-outcome-in-or-after-2010."]], "Example 1a. Create a table with only one hospitalization per patient, keeping the most recent encounter for each patient. Sort the dataset by patient_id_hashed and discharge_date_time, and then keep the recent record.": [[65, "Example-1a.-Create-a-table-with-only-one-hospitalization-per-patient,-keeping-the-most-recent-encounter-for-each-patient.-Sort-the-dataset-by-patient_id_hashed-and-discharge_date_time,-and-then-keep-the-recent-record."]], "Example 1b. From the above set of encounters, take a subset of patients who were discharged between April 1, 2015 and March 31, 2016.": [[65, "Example-1b.-From-the-above-set-of-encounters,-take-a-subset-of-patients-who-were-discharged-between-April-1,-2015-and-March-31,-2016."]], "Example 1c. From the above set of encounters, get the total number of admissions for each hospital.": [[65, "Example-1c.-From-the-above-set-of-encounters,-get-the-total-number-of-admissions-for-each-hospital."]], "Example 2. Get all female patient encounters with diagnoses (gastroenteritis in ICD-9 long title).": [[66, "Example-2.-Get-all-female-patient-encounters-with-diagnoses-(gastroenteritis-in-ICD-9-long-title)."]], "Example 2. Get all measurements for female patient visits with sepsis diagnoses, that ended in a mortality outcome.": [[68, "Example-2.-Get-all-measurements-for-female-patient-visits-with-sepsis-diagnoses,-that-ended-in-a-mortality-outcome."]], "Example 2. Get all patient encounters with diagnoses (schizophrenia in ICD-10 long title), in the year 2015.": [[67, "Example-2.-Get-all-patient-encounters-with-diagnoses-(schizophrenia-in-ICD-10-long-title),-in-the-year-2015."]], "Example 2. Get all patient encounters with diagnoses (schizophrenia in diagnosisstring), discharged in the year 2015.": [[64, "Example-2.-Get-all-patient-encounters-with-diagnoses-(schizophrenia-in-diagnosisstring),-discharged-in-the-year-2015."]], "Example 2. Get measurements for all visits in or after 2020.": [[68, "Example-2.-Get-measurements-for-all-visits-in-or-after-2020."]], "Example 2a. How many sodium tests were placed between Apr 1, 2015 and May 31, 2015 at hospital 101?": [[65, "Example-2a.-How-many-sodium-tests-were-placed-between-Apr-1,-2015-and-May-31,-2015-at-hospital-101?"]], "Example 3. Advanced - uses ConditionRegexMatch from cycquery.ops. Get all patient encounters with diagnoses (ICD-9 long title contains schizophrenia and chronic ), in the year 2015.": [[67, "Example-3.-Advanced---uses-ConditionRegexMatch-from-cycquery.ops.-Get-all-patient-encounters-with-diagnoses-(ICD-9-long-title-contains-schizophrenia-and-chronic-),-in-the-year-2015."]], "Example 3. Get potassium lab tests for female patients.": [[66, "Example-3.-Get-potassium-lab-tests-for-female-patients."]], "Example 3. Get potassium lab tests for patients discharged in the year 2014, for all teaching hospitals.": [[64, "Example-3.-Get-potassium-lab-tests-for-patients-discharged-in-the-year-2014,-for-all-teaching-hospitals."]], "Example 4. Get AaDO2 carevue chart events for male patients that have a valuenum of less than 20.": [[66, "Example-4.-Get-AaDO2-carevue-chart-events-for-male-patients-that-have-a-valuenum-of-less-than-20."]], "Example 4. Get glucose medications (substring search) for female patients discharged in 2014.": [[64, "Example-4.-Get-glucose-medications-(substring-search)-for-female-patients-discharged-in-2014."]], "Example 4. Get routine vital signs for patients from year 2015.": [[67, "Example-4.-Get-routine-vital-signs-for-patients-from-year-2015."]], "Example 5. Get hemoglobin lab tests for patients from year 2009.": [[67, "Example-5.-Get-hemoglobin-lab-tests-for-patients-from-year-2009."]], "Example 6. Get radiology reports and filter on keywords lymphadenopathy and infectious occurring together from year 2009.": [[67, "Example-6.-Get-radiology-reports-and-filter-on-keywords-lymphadenopathy-and-infectious-occurring-together-from-year-2009."]], "Example 7. Get all female patient encounters from year 2015, and return batches partitioned and indexed on subject_id.": [[67, "Example-7.-Get-all-female-patient-encounters-from-year-2015,-and-return-batches-partitioned-and-indexed-on-subject_id."]], "Example 8. Running a raw SQL string.": [[67, "Example-8.-Running-a-raw-SQL-string."]], "GEMINI tutorial": [[65, "GEMINI-tutorial"]], "Imports and instantiate EICUQuerier": [[64, "Imports-and-instantiate-EICUQuerier"]], "Imports and instantiate GEMINIQuerier.": [[65, "Imports-and-instantiate-GEMINIQuerier."]], "Imports and instantiate MIMICIIIQuerier": [[66, "Imports-and-instantiate-MIMICIIIQuerier"]], "Imports and instantiate MIMICIVQuerier": [[67, "Imports-and-instantiate-MIMICIVQuerier"]], "Imports and instantiate OMOPQuerier.": [[68, "Imports-and-instantiate-OMOPQuerier."], [68, "id1"]], "Installing cycquery using pip": [[3, "installing-cycquery-using-pip"]], "MIMIC-III tutorial": [[66, "MIMIC-III-tutorial"]], "MIMIC-IV tutorial": [[67, "MIMIC-IV-tutorial"]], "OMOP tutorial": [[68, "OMOP-tutorial"]], "Pre-commit hooks": [[1, "pre-commit-hooks"]], "Query postgresql database": [[3, "query-postgresql-database"]], "Tutorials": [[63, "tutorials"]], "Using poetry": [[3, "using-poetry"]], "Welcome to cycquery\u2019s documentation!": [[2, "welcome-to-cycquery-s-documentation"]], "cycquery": [[3, "cycquery"], [62, "module-cycquery"]], "cycquery.base": [[4, "module-cycquery.base"]], "cycquery.base.DatasetQuerier": [[5, "cycquery-base-datasetquerier"]], "cycquery.eicu": [[6, "module-cycquery.eicu"]], "cycquery.eicu.EICUQuerier": [[7, "cycquery-eicu-eicuquerier"]], "cycquery.gemini": [[8, "module-cycquery.gemini"]], "cycquery.gemini.GEMINIQuerier": [[9, "cycquery-gemini-geminiquerier"]], "cycquery.interface": [[10, "module-cycquery.interface"]], "cycquery.interface.QueryInterface": [[11, "cycquery-interface-queryinterface"]], "cycquery.mimiciii": [[12, "module-cycquery.mimiciii"]], "cycquery.mimiciii.MIMICIIIQuerier": [[13, "cycquery-mimiciii-mimiciiiquerier"]], "cycquery.mimiciv": [[14, "module-cycquery.mimiciv"]], "cycquery.mimiciv.MIMICIVQuerier": [[15, "cycquery-mimiciv-mimicivquerier"]], "cycquery.omop": [[16, "module-cycquery.omop"]], "cycquery.omop.OMOPQuerier": [[17, "cycquery-omop-omopquerier"]], "cycquery.ops": [[18, "module-cycquery.ops"]], "cycquery.ops.AddColumn": [[19, "cycquery-ops-addcolumn"]], "cycquery.ops.AddDeltaColumn": [[20, "cycquery-ops-adddeltacolumn"]], "cycquery.ops.AddDeltaConstant": [[21, "cycquery-ops-adddeltaconstant"]], "cycquery.ops.AddNumeric": [[22, "cycquery-ops-addnumeric"]], "cycquery.ops.And": [[23, "cycquery-ops-and"]], "cycquery.ops.Apply": [[24, "cycquery-ops-apply"]], "cycquery.ops.Cast": [[25, "cycquery-ops-cast"]], "cycquery.ops.ConditionAfterDate": [[26, "cycquery-ops-conditionafterdate"]], "cycquery.ops.ConditionBeforeDate": [[27, "cycquery-ops-conditionbeforedate"]], "cycquery.ops.ConditionEndsWith": [[28, "cycquery-ops-conditionendswith"]], "cycquery.ops.ConditionEquals": [[29, "cycquery-ops-conditionequals"]], "cycquery.ops.ConditionGreaterThan": [[30, "cycquery-ops-conditiongreaterthan"]], "cycquery.ops.ConditionIn": [[31, "cycquery-ops-conditionin"]], "cycquery.ops.ConditionInMonths": [[32, "cycquery-ops-conditioninmonths"]], "cycquery.ops.ConditionInYears": [[33, "cycquery-ops-conditioninyears"]], "cycquery.ops.ConditionLessThan": [[34, "cycquery-ops-conditionlessthan"]], "cycquery.ops.ConditionLike": [[35, "cycquery-ops-conditionlike"]], "cycquery.ops.ConditionRegexMatch": [[36, "cycquery-ops-conditionregexmatch"]], "cycquery.ops.ConditionStartsWith": [[37, "cycquery-ops-conditionstartswith"]], "cycquery.ops.ConditionSubstring": [[38, "cycquery-ops-conditionsubstring"]], "cycquery.ops.Count": [[39, "cycquery-ops-count"]], "cycquery.ops.Distinct": [[40, "cycquery-ops-distinct"]], "cycquery.ops.Drop": [[41, "cycquery-ops-drop"]], "cycquery.ops.DropEmpty": [[42, "cycquery-ops-dropempty"]], "cycquery.ops.DropNulls": [[43, "cycquery-ops-dropnulls"]], "cycquery.ops.ExtractTimestampComponent": [[44, "cycquery-ops-extracttimestampcomponent"]], "cycquery.ops.FillNull": [[45, "cycquery-ops-fillnull"]], "cycquery.ops.GroupByAggregate": [[46, "cycquery-ops-groupbyaggregate"]], "cycquery.ops.Join": [[47, "cycquery-ops-join"]], "cycquery.ops.Keep": [[48, "cycquery-ops-keep"]], "cycquery.ops.Limit": [[49, "cycquery-ops-limit"]], "cycquery.ops.Literal": [[50, "cycquery-ops-literal"]], "cycquery.ops.Or": [[51, "cycquery-ops-or"]], "cycquery.ops.OrderBy": [[52, "cycquery-ops-orderby"]], "cycquery.ops.QueryOp": [[53, "cycquery-ops-queryop"]], "cycquery.ops.RandomizeOrder": [[54, "cycquery-ops-randomizeorder"]], "cycquery.ops.Rename": [[55, "cycquery-ops-rename"]], "cycquery.ops.Reorder": [[56, "cycquery-ops-reorder"]], "cycquery.ops.ReorderAfter": [[57, "cycquery-ops-reorderafter"]], "cycquery.ops.Sequential": [[58, "cycquery-ops-sequential"]], "cycquery.ops.Substring": [[59, "cycquery-ops-substring"]], "cycquery.ops.Trim": [[60, "cycquery-ops-trim"]], "cycquery.ops.Union": [[61, "cycquery-ops-union"]], "dataset APIs": [[62, "dataset-apis"]], "eICU-CRD tutorial": [[64, "eICU-CRD-tutorial"]], "\ud83d\udc23 Getting Started": [[3, "getting-started"]], "\ud83d\udcda Documentation": [[3, "documentation"]], "\ud83e\uddd1\ud83c\udfff\u200d\ud83d\udcbb Developing": [[3, "developing"]]}, "docnames": ["api", "contributing", "index", "intro", "reference/api/_autosummary/cycquery.base", "reference/api/_autosummary/cycquery.base.DatasetQuerier", "reference/api/_autosummary/cycquery.eicu", "reference/api/_autosummary/cycquery.eicu.EICUQuerier", "reference/api/_autosummary/cycquery.gemini", "reference/api/_autosummary/cycquery.gemini.GEMINIQuerier", "reference/api/_autosummary/cycquery.interface", "reference/api/_autosummary/cycquery.interface.QueryInterface", "reference/api/_autosummary/cycquery.mimiciii", "reference/api/_autosummary/cycquery.mimiciii.MIMICIIIQuerier", "reference/api/_autosummary/cycquery.mimiciv", "reference/api/_autosummary/cycquery.mimiciv.MIMICIVQuerier", "reference/api/_autosummary/cycquery.omop", "reference/api/_autosummary/cycquery.omop.OMOPQuerier", "reference/api/_autosummary/cycquery.ops", "reference/api/_autosummary/cycquery.ops.AddColumn", "reference/api/_autosummary/cycquery.ops.AddDeltaColumn", "reference/api/_autosummary/cycquery.ops.AddDeltaConstant", "reference/api/_autosummary/cycquery.ops.AddNumeric", "reference/api/_autosummary/cycquery.ops.And", "reference/api/_autosummary/cycquery.ops.Apply", "reference/api/_autosummary/cycquery.ops.Cast", "reference/api/_autosummary/cycquery.ops.ConditionAfterDate", "reference/api/_autosummary/cycquery.ops.ConditionBeforeDate", "reference/api/_autosummary/cycquery.ops.ConditionEndsWith", "reference/api/_autosummary/cycquery.ops.ConditionEquals", "reference/api/_autosummary/cycquery.ops.ConditionGreaterThan", "reference/api/_autosummary/cycquery.ops.ConditionIn", "reference/api/_autosummary/cycquery.ops.ConditionInMonths", "reference/api/_autosummary/cycquery.ops.ConditionInYears", "reference/api/_autosummary/cycquery.ops.ConditionLessThan", "reference/api/_autosummary/cycquery.ops.ConditionLike", "reference/api/_autosummary/cycquery.ops.ConditionRegexMatch", "reference/api/_autosummary/cycquery.ops.ConditionStartsWith", "reference/api/_autosummary/cycquery.ops.ConditionSubstring", "reference/api/_autosummary/cycquery.ops.Count", "reference/api/_autosummary/cycquery.ops.Distinct", "reference/api/_autosummary/cycquery.ops.Drop", "reference/api/_autosummary/cycquery.ops.DropEmpty", "reference/api/_autosummary/cycquery.ops.DropNulls", "reference/api/_autosummary/cycquery.ops.ExtractTimestampComponent", "reference/api/_autosummary/cycquery.ops.FillNull", "reference/api/_autosummary/cycquery.ops.GroupByAggregate", "reference/api/_autosummary/cycquery.ops.Join", "reference/api/_autosummary/cycquery.ops.Keep", "reference/api/_autosummary/cycquery.ops.Limit", "reference/api/_autosummary/cycquery.ops.Literal", "reference/api/_autosummary/cycquery.ops.Or", "reference/api/_autosummary/cycquery.ops.OrderBy", "reference/api/_autosummary/cycquery.ops.QueryOp", "reference/api/_autosummary/cycquery.ops.RandomizeOrder", "reference/api/_autosummary/cycquery.ops.Rename", "reference/api/_autosummary/cycquery.ops.Reorder", "reference/api/_autosummary/cycquery.ops.ReorderAfter", "reference/api/_autosummary/cycquery.ops.Sequential", "reference/api/_autosummary/cycquery.ops.Substring", "reference/api/_autosummary/cycquery.ops.Trim", "reference/api/_autosummary/cycquery.ops.Union", "reference/api/cycquery", "tutorials", "tutorials/eicu", "tutorials/gemini", "tutorials/mimiciii", "tutorials/mimiciv", "tutorials/omop"], "envversion": {"nbsphinx": 4, "sphinx": 61, "sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.intersphinx": 1, "sphinx.ext.todo": 2, "sphinx.ext.viewcode": 1}, "filenames": ["api.rst", "contributing.rst", "index.rst", "intro.rst", "reference/api/_autosummary/cycquery.base.rst", "reference/api/_autosummary/cycquery.base.DatasetQuerier.rst", "reference/api/_autosummary/cycquery.eicu.rst", "reference/api/_autosummary/cycquery.eicu.EICUQuerier.rst", "reference/api/_autosummary/cycquery.gemini.rst", "reference/api/_autosummary/cycquery.gemini.GEMINIQuerier.rst", "reference/api/_autosummary/cycquery.interface.rst", "reference/api/_autosummary/cycquery.interface.QueryInterface.rst", "reference/api/_autosummary/cycquery.mimiciii.rst", "reference/api/_autosummary/cycquery.mimiciii.MIMICIIIQuerier.rst", "reference/api/_autosummary/cycquery.mimiciv.rst", "reference/api/_autosummary/cycquery.mimiciv.MIMICIVQuerier.rst", "reference/api/_autosummary/cycquery.omop.rst", "reference/api/_autosummary/cycquery.omop.OMOPQuerier.rst", "reference/api/_autosummary/cycquery.ops.rst", "reference/api/_autosummary/cycquery.ops.AddColumn.rst", "reference/api/_autosummary/cycquery.ops.AddDeltaColumn.rst", "reference/api/_autosummary/cycquery.ops.AddDeltaConstant.rst", "reference/api/_autosummary/cycquery.ops.AddNumeric.rst", "reference/api/_autosummary/cycquery.ops.And.rst", "reference/api/_autosummary/cycquery.ops.Apply.rst", "reference/api/_autosummary/cycquery.ops.Cast.rst", "reference/api/_autosummary/cycquery.ops.ConditionAfterDate.rst", "reference/api/_autosummary/cycquery.ops.ConditionBeforeDate.rst", "reference/api/_autosummary/cycquery.ops.ConditionEndsWith.rst", "reference/api/_autosummary/cycquery.ops.ConditionEquals.rst", "reference/api/_autosummary/cycquery.ops.ConditionGreaterThan.rst", "reference/api/_autosummary/cycquery.ops.ConditionIn.rst", "reference/api/_autosummary/cycquery.ops.ConditionInMonths.rst", "reference/api/_autosummary/cycquery.ops.ConditionInYears.rst", "reference/api/_autosummary/cycquery.ops.ConditionLessThan.rst", "reference/api/_autosummary/cycquery.ops.ConditionLike.rst", "reference/api/_autosummary/cycquery.ops.ConditionRegexMatch.rst", "reference/api/_autosummary/cycquery.ops.ConditionStartsWith.rst", "reference/api/_autosummary/cycquery.ops.ConditionSubstring.rst", "reference/api/_autosummary/cycquery.ops.Count.rst", "reference/api/_autosummary/cycquery.ops.Distinct.rst", "reference/api/_autosummary/cycquery.ops.Drop.rst", "reference/api/_autosummary/cycquery.ops.DropEmpty.rst", "reference/api/_autosummary/cycquery.ops.DropNulls.rst", "reference/api/_autosummary/cycquery.ops.ExtractTimestampComponent.rst", "reference/api/_autosummary/cycquery.ops.FillNull.rst", "reference/api/_autosummary/cycquery.ops.GroupByAggregate.rst", "reference/api/_autosummary/cycquery.ops.Join.rst", "reference/api/_autosummary/cycquery.ops.Keep.rst", "reference/api/_autosummary/cycquery.ops.Limit.rst", "reference/api/_autosummary/cycquery.ops.Literal.rst", "reference/api/_autosummary/cycquery.ops.Or.rst", "reference/api/_autosummary/cycquery.ops.OrderBy.rst", "reference/api/_autosummary/cycquery.ops.QueryOp.rst", "reference/api/_autosummary/cycquery.ops.RandomizeOrder.rst", "reference/api/_autosummary/cycquery.ops.Rename.rst", "reference/api/_autosummary/cycquery.ops.Reorder.rst", "reference/api/_autosummary/cycquery.ops.ReorderAfter.rst", "reference/api/_autosummary/cycquery.ops.Sequential.rst", "reference/api/_autosummary/cycquery.ops.Substring.rst", "reference/api/_autosummary/cycquery.ops.Trim.rst", "reference/api/_autosummary/cycquery.ops.Union.rst", "reference/api/cycquery.rst", "tutorials.rst", "tutorials/eicu.ipynb", "tutorials/gemini.ipynb", "tutorials/mimiciii.ipynb", "tutorials/mimiciv.ipynb", "tutorials/omop.ipynb"], "indexentries": {"__add__() (sequential method)": [[58, "cycquery.ops.Sequential.__add__", false]], "__call__() (addcolumn method)": [[19, "cycquery.ops.AddColumn.__call__", false]], "__call__() (adddeltacolumn method)": [[20, "cycquery.ops.AddDeltaColumn.__call__", false]], "__call__() (adddeltaconstant method)": [[21, "cycquery.ops.AddDeltaConstant.__call__", false]], "__call__() (addnumeric method)": [[22, "cycquery.ops.AddNumeric.__call__", false]], "__call__() (and method)": [[23, "cycquery.ops.And.__call__", false]], "__call__() (apply method)": [[24, "cycquery.ops.Apply.__call__", false]], "__call__() (cast method)": [[25, "cycquery.ops.Cast.__call__", false]], "__call__() (conditionafterdate method)": [[26, "cycquery.ops.ConditionAfterDate.__call__", false]], "__call__() (conditionbeforedate method)": [[27, "cycquery.ops.ConditionBeforeDate.__call__", false]], "__call__() (conditionendswith method)": [[28, "cycquery.ops.ConditionEndsWith.__call__", false]], "__call__() (conditionequals method)": [[29, "cycquery.ops.ConditionEquals.__call__", false]], "__call__() (conditiongreaterthan method)": [[30, "cycquery.ops.ConditionGreaterThan.__call__", false]], "__call__() (conditionin method)": [[31, "cycquery.ops.ConditionIn.__call__", false]], "__call__() (conditioninmonths method)": [[32, "cycquery.ops.ConditionInMonths.__call__", false]], "__call__() (conditioninyears method)": [[33, "cycquery.ops.ConditionInYears.__call__", false]], "__call__() (conditionlessthan method)": [[34, "cycquery.ops.ConditionLessThan.__call__", false]], "__call__() (conditionlike method)": [[35, "cycquery.ops.ConditionLike.__call__", false]], "__call__() (conditionregexmatch method)": [[36, "cycquery.ops.ConditionRegexMatch.__call__", false]], "__call__() (conditionstartswith method)": [[37, "cycquery.ops.ConditionStartsWith.__call__", false]], "__call__() (conditionsubstring method)": [[38, "cycquery.ops.ConditionSubstring.__call__", false]], "__call__() (count method)": [[39, "cycquery.ops.Count.__call__", false]], "__call__() (distinct method)": [[40, "cycquery.ops.Distinct.__call__", false]], "__call__() (drop method)": [[41, "cycquery.ops.Drop.__call__", false]], "__call__() (dropempty method)": [[42, "cycquery.ops.DropEmpty.__call__", false]], "__call__() (dropnulls method)": [[43, "cycquery.ops.DropNulls.__call__", false]], "__call__() (extracttimestampcomponent method)": [[44, "cycquery.ops.ExtractTimestampComponent.__call__", false]], "__call__() (fillnull method)": [[45, "cycquery.ops.FillNull.__call__", false]], "__call__() (groupbyaggregate method)": [[46, "cycquery.ops.GroupByAggregate.__call__", false]], "__call__() (join method)": [[47, "cycquery.ops.Join.__call__", false]], "__call__() (keep method)": [[48, "cycquery.ops.Keep.__call__", false]], "__call__() (limit method)": [[49, "cycquery.ops.Limit.__call__", false]], "__call__() (literal method)": [[50, "cycquery.ops.Literal.__call__", false]], "__call__() (or method)": [[51, "cycquery.ops.Or.__call__", false]], "__call__() (orderby method)": [[52, "cycquery.ops.OrderBy.__call__", false]], "__call__() (queryop method)": [[53, "cycquery.ops.QueryOp.__call__", false]], "__call__() (randomizeorder method)": [[54, "cycquery.ops.RandomizeOrder.__call__", false]], "__call__() (rename method)": [[55, "cycquery.ops.Rename.__call__", false]], "__call__() (reorder method)": [[56, "cycquery.ops.Reorder.__call__", false]], "__call__() (reorderafter method)": [[57, "cycquery.ops.ReorderAfter.__call__", false]], "__call__() (sequential method)": [[58, "cycquery.ops.Sequential.__call__", false]], "__call__() (substring method)": [[59, "cycquery.ops.Substring.__call__", false]], "__call__() (trim method)": [[60, "cycquery.ops.Trim.__call__", false]], "__call__() (union method)": [[61, "cycquery.ops.Union.__call__", false]], "__init__() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.__init__", false]], "__init__() (sequential method)": [[58, "cycquery.ops.Sequential.__init__", false]], "addcolumn (class in cycquery.ops)": [[19, "cycquery.ops.AddColumn", false]], "adddeltacolumn (class in cycquery.ops)": [[20, "cycquery.ops.AddDeltaColumn", false]], "adddeltaconstant (class in cycquery.ops)": [[21, "cycquery.ops.AddDeltaConstant", false]], "addnumeric (class in cycquery.ops)": [[22, "cycquery.ops.AddNumeric", false]], "and (class in cycquery.ops)": [[23, "cycquery.ops.And", false]], "append() (sequential method)": [[58, "cycquery.ops.Sequential.append", false]], "apply (class in cycquery.ops)": [[24, "cycquery.ops.Apply", false]], "care_units() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.care_units", false]], "cast (class in cycquery.ops)": [[25, "cycquery.ops.Cast", false]], "chartevents() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.chartevents", false]], "chartevents() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.chartevents", false]], "clear_data() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.clear_data", false]], "conditionafterdate (class in cycquery.ops)": [[26, "cycquery.ops.ConditionAfterDate", false]], "conditionbeforedate (class in cycquery.ops)": [[27, "cycquery.ops.ConditionBeforeDate", false]], "conditionendswith (class in cycquery.ops)": [[28, "cycquery.ops.ConditionEndsWith", false]], "conditionequals (class in cycquery.ops)": [[29, "cycquery.ops.ConditionEquals", false]], "conditiongreaterthan (class in cycquery.ops)": [[30, "cycquery.ops.ConditionGreaterThan", false]], "conditionin (class in cycquery.ops)": [[31, "cycquery.ops.ConditionIn", false]], "conditioninmonths (class in cycquery.ops)": [[32, "cycquery.ops.ConditionInMonths", false]], "conditioninyears (class in cycquery.ops)": [[33, "cycquery.ops.ConditionInYears", false]], "conditionlessthan (class in cycquery.ops)": [[34, "cycquery.ops.ConditionLessThan", false]], "conditionlike (class in cycquery.ops)": [[35, "cycquery.ops.ConditionLike", false]], "conditionregexmatch (class in cycquery.ops)": [[36, "cycquery.ops.ConditionRegexMatch", false]], "conditionstartswith (class in cycquery.ops)": [[37, "cycquery.ops.ConditionStartsWith", false]], "conditionsubstring (class in cycquery.ops)": [[38, "cycquery.ops.ConditionSubstring", false]], "count (class in cycquery.ops)": [[39, "cycquery.ops.Count", false]], "cycquery": [[62, "module-cycquery", false]], "cycquery.base": [[4, "module-cycquery.base", false]], "cycquery.eicu": [[6, "module-cycquery.eicu", false]], "cycquery.gemini": [[8, "module-cycquery.gemini", false]], "cycquery.interface": [[10, "module-cycquery.interface", false]], "cycquery.mimiciii": [[12, "module-cycquery.mimiciii", false]], "cycquery.mimiciv": [[14, "module-cycquery.mimiciv", false]], "cycquery.omop": [[16, "module-cycquery.omop", false]], "cycquery.ops": [[18, "module-cycquery.ops", false]], "data (queryinterface property)": [[11, "cycquery.interface.QueryInterface.data", false]], "datasetquerier (class in cycquery.base)": [[5, "cycquery.base.DatasetQuerier", false]], "db (datasetquerier attribute)": [[5, "cycquery.base.DatasetQuerier.db", false]], "diagnoses() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.diagnoses", false]], "diagnoses() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.diagnoses", false]], "diagnoses_icd() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.diagnoses_icd", false]], "distinct (class in cycquery.ops)": [[40, "cycquery.ops.Distinct", false]], "drop (class in cycquery.ops)": [[41, "cycquery.ops.Drop", false]], "dropempty (class in cycquery.ops)": [[42, "cycquery.ops.DropEmpty", false]], "dropnulls (class in cycquery.ops)": [[43, "cycquery.ops.DropNulls", false]], "eicuquerier (class in cycquery.eicu)": [[7, "cycquery.eicu.EICUQuerier", false]], "extend() (sequential method)": [[58, "cycquery.ops.Sequential.extend", false]], "extracttimestampcomponent (class in cycquery.ops)": [[44, "cycquery.ops.ExtractTimestampComponent", false]], "fillnull (class in cycquery.ops)": [[45, "cycquery.ops.FillNull", false]], "geminiquerier (class in cycquery.gemini)": [[9, "cycquery.gemini.GEMINIQuerier", false]], "get_table() (datasetquerier method)": [[5, "cycquery.base.DatasetQuerier.get_table", false]], "get_table() (eicuquerier method)": [[7, "cycquery.eicu.EICUQuerier.get_table", false]], "get_table() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.get_table", false]], "get_table() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.get_table", false]], "get_table() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.get_table", false]], "get_table() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.get_table", false]], "groupbyaggregate (class in cycquery.ops)": [[46, "cycquery.ops.GroupByAggregate", false]], "imaging() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.imaging", false]], "insert() (sequential method)": [[58, "cycquery.ops.Sequential.insert", false]], "ip_admin() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.ip_admin", false]], "join (class in cycquery.ops)": [[47, "cycquery.ops.Join", false]], "join() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.join", false]], "keep (class in cycquery.ops)": [[48, "cycquery.ops.Keep", false]], "labevents() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.labevents", false]], "labevents() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.labevents", false]], "limit (class in cycquery.ops)": [[49, "cycquery.ops.Limit", false]], "list_columns() (datasetquerier method)": [[5, "cycquery.base.DatasetQuerier.list_columns", false]], "list_columns() (eicuquerier method)": [[7, "cycquery.eicu.EICUQuerier.list_columns", false]], "list_columns() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.list_columns", false]], "list_columns() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.list_columns", false]], "list_columns() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.list_columns", false]], "list_columns() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.list_columns", false]], "list_custom_tables() (datasetquerier method)": [[5, "cycquery.base.DatasetQuerier.list_custom_tables", false]], "list_custom_tables() (eicuquerier method)": [[7, "cycquery.eicu.EICUQuerier.list_custom_tables", false]], "list_custom_tables() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.list_custom_tables", false]], "list_custom_tables() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.list_custom_tables", false]], "list_custom_tables() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.list_custom_tables", false]], "list_custom_tables() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.list_custom_tables", false]], "list_schemas() (datasetquerier method)": [[5, "cycquery.base.DatasetQuerier.list_schemas", false]], "list_schemas() (eicuquerier method)": [[7, "cycquery.eicu.EICUQuerier.list_schemas", false]], "list_schemas() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.list_schemas", false]], "list_schemas() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.list_schemas", false]], "list_schemas() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.list_schemas", false]], "list_schemas() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.list_schemas", false]], "list_tables() (datasetquerier method)": [[5, "cycquery.base.DatasetQuerier.list_tables", false]], "list_tables() (eicuquerier method)": [[7, "cycquery.eicu.EICUQuerier.list_tables", false]], "list_tables() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.list_tables", false]], "list_tables() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.list_tables", false]], "list_tables() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.list_tables", false]], "list_tables() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.list_tables", false]], "literal (class in cycquery.ops)": [[50, "cycquery.ops.Literal", false]], "map_concept_ids_to_name() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.map_concept_ids_to_name", false]], "measurement() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.measurement", false]], "mimiciiiquerier (class in cycquery.mimiciii)": [[13, "cycquery.mimiciii.MIMICIIIQuerier", false]], "mimicivquerier (class in cycquery.mimiciv)": [[15, "cycquery.mimiciv.MIMICIVQuerier", false]], "module": [[4, "module-cycquery.base", false], [6, "module-cycquery.eicu", false], [8, "module-cycquery.gemini", false], [10, "module-cycquery.interface", false], [12, "module-cycquery.mimiciii", false], [14, "module-cycquery.mimiciv", false], [16, "module-cycquery.omop", false], [18, "module-cycquery.ops", false], [62, "module-cycquery", false]], "observation() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.observation", false]], "omopquerier (class in cycquery.omop)": [[17, "cycquery.omop.OMOPQuerier", false]], "ops() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.ops", false]], "or (class in cycquery.ops)": [[51, "cycquery.ops.Or", false]], "orderby (class in cycquery.ops)": [[52, "cycquery.ops.OrderBy", false]], "patients() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.patients", false]], "person() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.person", false]], "pop() (sequential method)": [[58, "cycquery.ops.Sequential.pop", false]], "procedures_icd() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.procedures_icd", false]], "queryinterface (class in cycquery.interface)": [[11, "cycquery.interface.QueryInterface", false]], "queryop (class in cycquery.ops)": [[53, "cycquery.ops.QueryOp", false]], "randomizeorder (class in cycquery.ops)": [[54, "cycquery.ops.RandomizeOrder", false]], "rename (class in cycquery.ops)": [[55, "cycquery.ops.Rename", false]], "reorder (class in cycquery.ops)": [[56, "cycquery.ops.Reorder", false]], "reorderafter (class in cycquery.ops)": [[57, "cycquery.ops.ReorderAfter", false]], "room_transfer() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.room_transfer", false]], "run() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.run", false]], "save() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.save", false]], "sequential (class in cycquery.ops)": [[58, "cycquery.ops.Sequential", false]], "substring (class in cycquery.ops)": [[59, "cycquery.ops.Substring", false]], "trim (class in cycquery.ops)": [[60, "cycquery.ops.Trim", false]], "union (class in cycquery.ops)": [[61, "cycquery.ops.Union", false]], "union() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.union", false]], "union_all() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.union_all", false]], "visit_detail() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.visit_detail", false]], "visit_occurrence() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.visit_occurrence", false]]}, "objects": {"": [[62, 0, 0, "-", "cycquery"]], "cycquery": [[4, 0, 0, "-", "base"], [6, 0, 0, "-", "eicu"], [8, 0, 0, "-", "gemini"], [10, 0, 0, "-", "interface"], [12, 0, 0, "-", "mimiciii"], [14, 0, 0, "-", "mimiciv"], [16, 0, 0, "-", "omop"], [18, 0, 0, "-", "ops"]], "cycquery.base": [[5, 1, 1, "", "DatasetQuerier"]], "cycquery.base.DatasetQuerier": [[5, 2, 1, "", "db"], [5, 3, 1, "", "get_table"], [5, 3, 1, "", "list_columns"], [5, 3, 1, "", "list_custom_tables"], [5, 3, 1, "", "list_schemas"], [5, 3, 1, "", "list_tables"]], "cycquery.eicu": [[7, 1, 1, "", "EICUQuerier"]], "cycquery.eicu.EICUQuerier": [[7, 3, 1, "", "get_table"], [7, 3, 1, "", "list_columns"], [7, 3, 1, "", "list_custom_tables"], [7, 3, 1, "", "list_schemas"], [7, 3, 1, "", "list_tables"]], "cycquery.gemini": [[9, 1, 1, "", "GEMINIQuerier"]], "cycquery.gemini.GEMINIQuerier": [[9, 3, 1, "", "care_units"], [9, 3, 1, "", "diagnoses"], [9, 3, 1, "", "get_table"], [9, 3, 1, "", "imaging"], [9, 3, 1, "", "ip_admin"], [9, 3, 1, "", "list_columns"], [9, 3, 1, "", "list_custom_tables"], [9, 3, 1, "", "list_schemas"], [9, 3, 1, "", "list_tables"], [9, 3, 1, "", "room_transfer"]], "cycquery.interface": [[11, 1, 1, "", "QueryInterface"]], "cycquery.interface.QueryInterface": [[11, 3, 1, "", "__init__"], [11, 3, 1, "", "clear_data"], [11, 4, 1, "", "data"], [11, 3, 1, "", "join"], [11, 3, 1, "", "ops"], [11, 3, 1, "", "run"], [11, 3, 1, "", "save"], [11, 3, 1, "", "union"], [11, 3, 1, "", "union_all"]], "cycquery.mimiciii": [[13, 1, 1, "", "MIMICIIIQuerier"]], "cycquery.mimiciii.MIMICIIIQuerier": [[13, 3, 1, "", "chartevents"], [13, 3, 1, "", "diagnoses"], [13, 3, 1, "", "get_table"], [13, 3, 1, "", "labevents"], [13, 3, 1, "", "list_columns"], [13, 3, 1, "", "list_custom_tables"], [13, 3, 1, "", "list_schemas"], [13, 3, 1, "", "list_tables"]], "cycquery.mimiciv": [[15, 1, 1, "", "MIMICIVQuerier"]], "cycquery.mimiciv.MIMICIVQuerier": [[15, 3, 1, "", "chartevents"], [15, 3, 1, "", "diagnoses_icd"], [15, 3, 1, "", "get_table"], [15, 3, 1, "", "labevents"], [15, 3, 1, "", "list_columns"], [15, 3, 1, "", "list_custom_tables"], [15, 3, 1, "", "list_schemas"], [15, 3, 1, "", "list_tables"], [15, 3, 1, "", "patients"], [15, 3, 1, "", "procedures_icd"]], "cycquery.omop": [[17, 1, 1, "", "OMOPQuerier"]], "cycquery.omop.OMOPQuerier": [[17, 3, 1, "", "get_table"], [17, 3, 1, "", "list_columns"], [17, 3, 1, "", "list_custom_tables"], [17, 3, 1, "", "list_schemas"], [17, 3, 1, "", "list_tables"], [17, 3, 1, "", "map_concept_ids_to_name"], [17, 3, 1, "", "measurement"], [17, 3, 1, "", "observation"], [17, 3, 1, "", "person"], [17, 3, 1, "", "visit_detail"], [17, 3, 1, "", "visit_occurrence"]], "cycquery.ops": [[19, 1, 1, "", "AddColumn"], [20, 1, 1, "", "AddDeltaColumn"], [21, 1, 1, "", "AddDeltaConstant"], [22, 1, 1, "", "AddNumeric"], [23, 1, 1, "", "And"], [24, 1, 1, "", "Apply"], [25, 1, 1, "", "Cast"], [26, 1, 1, "", "ConditionAfterDate"], [27, 1, 1, "", "ConditionBeforeDate"], [28, 1, 1, "", "ConditionEndsWith"], [29, 1, 1, "", "ConditionEquals"], [30, 1, 1, "", "ConditionGreaterThan"], [31, 1, 1, "", "ConditionIn"], [32, 1, 1, "", "ConditionInMonths"], [33, 1, 1, "", "ConditionInYears"], [34, 1, 1, "", "ConditionLessThan"], [35, 1, 1, "", "ConditionLike"], [36, 1, 1, "", "ConditionRegexMatch"], [37, 1, 1, "", "ConditionStartsWith"], [38, 1, 1, "", "ConditionSubstring"], [39, 1, 1, "", "Count"], [40, 1, 1, "", "Distinct"], [41, 1, 1, "", "Drop"], [42, 1, 1, "", "DropEmpty"], [43, 1, 1, "", "DropNulls"], [44, 1, 1, "", "ExtractTimestampComponent"], [45, 1, 1, "", "FillNull"], [46, 1, 1, "", "GroupByAggregate"], [47, 1, 1, "", "Join"], [48, 1, 1, "", "Keep"], [49, 1, 1, "", "Limit"], [50, 1, 1, "", "Literal"], [51, 1, 1, "", "Or"], [52, 1, 1, "", "OrderBy"], [53, 1, 1, "", "QueryOp"], [54, 1, 1, "", "RandomizeOrder"], [55, 1, 1, "", "Rename"], [56, 1, 1, "", "Reorder"], [57, 1, 1, "", "ReorderAfter"], [58, 1, 1, "", "Sequential"], [59, 1, 1, "", "Substring"], [60, 1, 1, "", "Trim"], [61, 1, 1, "", "Union"]], "cycquery.ops.AddColumn": [[19, 3, 1, "", "__call__"]], "cycquery.ops.AddDeltaColumn": [[20, 3, 1, "", "__call__"]], "cycquery.ops.AddDeltaConstant": [[21, 3, 1, "", "__call__"]], "cycquery.ops.AddNumeric": [[22, 3, 1, "", "__call__"]], "cycquery.ops.And": [[23, 3, 1, "", "__call__"]], "cycquery.ops.Apply": [[24, 3, 1, "", "__call__"]], "cycquery.ops.Cast": [[25, 3, 1, "", "__call__"]], "cycquery.ops.ConditionAfterDate": [[26, 3, 1, "", "__call__"]], "cycquery.ops.ConditionBeforeDate": [[27, 3, 1, "", "__call__"]], "cycquery.ops.ConditionEndsWith": [[28, 3, 1, "", "__call__"]], "cycquery.ops.ConditionEquals": [[29, 3, 1, "", "__call__"]], "cycquery.ops.ConditionGreaterThan": [[30, 3, 1, "", "__call__"]], "cycquery.ops.ConditionIn": [[31, 3, 1, "", "__call__"]], "cycquery.ops.ConditionInMonths": [[32, 3, 1, "", "__call__"]], "cycquery.ops.ConditionInYears": [[33, 3, 1, "", "__call__"]], "cycquery.ops.ConditionLessThan": [[34, 3, 1, "", "__call__"]], "cycquery.ops.ConditionLike": [[35, 3, 1, "", "__call__"]], "cycquery.ops.ConditionRegexMatch": [[36, 3, 1, "", "__call__"]], "cycquery.ops.ConditionStartsWith": [[37, 3, 1, "", "__call__"]], "cycquery.ops.ConditionSubstring": [[38, 3, 1, "", "__call__"]], "cycquery.ops.Count": [[39, 3, 1, "", "__call__"]], "cycquery.ops.Distinct": [[40, 3, 1, "", "__call__"]], "cycquery.ops.Drop": [[41, 3, 1, "", "__call__"]], "cycquery.ops.DropEmpty": [[42, 3, 1, "", "__call__"]], "cycquery.ops.DropNulls": [[43, 3, 1, "", "__call__"]], "cycquery.ops.ExtractTimestampComponent": [[44, 3, 1, "", "__call__"]], "cycquery.ops.FillNull": [[45, 3, 1, "", "__call__"]], "cycquery.ops.GroupByAggregate": [[46, 3, 1, "", "__call__"]], "cycquery.ops.Join": [[47, 3, 1, "", "__call__"]], "cycquery.ops.Keep": [[48, 3, 1, "", "__call__"]], "cycquery.ops.Limit": [[49, 3, 1, "", "__call__"]], "cycquery.ops.Literal": [[50, 3, 1, "", "__call__"]], "cycquery.ops.Or": [[51, 3, 1, "", "__call__"]], "cycquery.ops.OrderBy": [[52, 3, 1, "", "__call__"]], "cycquery.ops.QueryOp": [[53, 3, 1, "", "__call__"]], "cycquery.ops.RandomizeOrder": [[54, 3, 1, "", "__call__"]], "cycquery.ops.Rename": [[55, 3, 1, "", "__call__"]], "cycquery.ops.Reorder": [[56, 3, 1, "", "__call__"]], "cycquery.ops.ReorderAfter": [[57, 3, 1, "", "__call__"]], "cycquery.ops.Sequential": [[58, 3, 1, "", "__add__"], [58, 3, 1, "", "__call__"], [58, 3, 1, "", "__init__"], [58, 3, 1, "", "append"], [58, 3, 1, "", "extend"], [58, 3, 1, "", "insert"], [58, 3, 1, "", "pop"]], "cycquery.ops.Substring": [[59, 3, 1, "", "__call__"]], "cycquery.ops.Trim": [[60, 3, 1, "", "__call__"]], "cycquery.ops.Union": [[61, 3, 1, "", "__call__"]]}, "objnames": {"0": ["py", "module", "Python module"], "1": ["py", "class", "Python class"], "2": ["py", "attribute", "Python attribute"], "3": ["py", "method", "Python method"], "4": ["py", "property", "Python property"]}, "objtypes": {"0": "py:module", "1": "py:class", "2": "py:attribute", "3": "py:method", "4": "py:property"}, "terms": {"": [5, 11, 17, 24, 45, 64, 65, 66, 67, 68], "0": [14, 45, 59, 64, 65, 66, 67, 68], "00": 64, "01": [26, 27, 64, 65, 66, 67, 68], "013766": 67, "02": 64, "03": [64, 65], "04": [64, 65], "041": 64, "047": 64, "05": [64, 65, 66], "077": 67, "079": 67, "08": 67, "080360": 67, "082": 67, "083": 67, "09": 65, "093352": 65, "1": [3, 11, 21, 22, 24, 26, 27, 29, 30, 31, 32, 34, 45, 50, 63], "10": [49, 63, 64, 66, 68], "100": [63, 66, 67, 68], "1000": 67, "1000000": 11, "101": 63, "1016": 66, "11": [64, 67, 68], "112": 67, "114": 67, "119322": 67, "12": 67, "13": 67, "145693": 65, "15": 68, "16": [64, 66, 67, 68], "161417": 68, "17": 65, "189734": 65, "19": 65, "1a": 63, "1b": 63, "1c": 63, "2": [3, 14, 22, 24, 31, 32, 59, 63, 65], "20": 63, "2009": 63, "2010": 63, "2011": 68, "2012": 68, "2013": 68, "2014": [63, 68], "2015": [63, 68], "2016": [63, 68], "2017": 68, "2018": 68, "2019": [33, 68], "2020": [26, 27, 33, 63], "2021": [63, 68], "2022": 68, "2023": [65, 68], "2024": [64, 66, 67, 68], "203": 64, "205": 64, "21": 65, "213": 68, "22": 66, "23": [67, 68], "24": 68, "243667": 66, "25": [67, 68], "26": [65, 67], "267": 66, "269": 66, "273": 67, "275": 67, "277": 67, "28": 66, "280096": 68, "284": 68, "2a": 63, "3": [63, 65, 68], "30": [67, 68], "31": 63, "319342": 66, "32": 68, "320281": 68, "320573": 66, "321": 68, "32567": 65, "333": 68, "347": 67, "349": 67, "36": 66, "38": 67, "382669": 64, "385223": 64, "39": [64, 65, 66, 67, 68], "393220": 67, "4": [63, 65, 68], "40": 68, "42": 67, "449": 65, "45": 65, "475876": 67, "49": 68, "5": [63, 64, 65, 66, 68], "506": 65, "51": [65, 68], "52": 65, "5432": [3, 17, 64, 66, 67, 68], "5815": 68, "591": 65, "592": 65, "593": 66, "6": [63, 65, 66, 68], "620": 64, "622": 64, "635": 66, "637": 66, "647": 66, "651641": 64, "653061": 66, "661972": 67, "675141": 65, "7": [63, 64, 65, 68], "704169": 68, "713": 64, "749": 67, "751": 67, "780566": 67, "788": 67, "790": 67, "8": [63, 68], "800": 68, "801": 68, "801912": 64, "814": 65, "815": 65, "82": 67, "849": 68, "856": [65, 66], "857": 65, "87": 67, "887": 67, "9": 63, "900": 64, "902": [64, 65], "903": 65, "911": 68, "913": 68, "925": 66, "927": 66, "9305": 65, "939296": 65, "940803": 67, "977": 68, "979": 68, "999": 67, "A": [10, 11, 21, 26, 27, 47], "And": [0, 67], "For": [1, 17], "If": [1, 17, 19, 20, 21, 22, 24, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 45, 46, 47, 52, 60], "In": 3, "It": [3, 24, 63], "No": [11, 68], "Not": 5, "OR": 51, "Or": 0, "The": [1, 3, 5, 11, 15, 20, 24, 48, 62, 63, 64, 66, 67, 68], "To": 1, "__add__": [0, 58], "__call__": [0, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61], "__init__": [0, 11, 58], "aado2": 63, "abov": 63, "abstract": 53, "accord": [17, 64, 66, 67, 68], "accordingli": [64, 66, 67, 68], "activ": 3, "ad": [11, 19, 20, 21, 22, 58], "add": [19, 20, 21, 22, 50, 58], "add_to": [19, 20, 21, 22], "addcolumn": 0, "adddeltacolumn": [0, 67], "adddeltaconst": 0, "addnumer": 0, "address": 5, "adjust": 15, "admdad": 65, "admiss": [63, 66], "admissiondrug": 64, "admissiondx": 64, "admittim": 67, "admitting_concept_id": 68, "advanc": 63, "after": [5, 15, 24, 26, 57, 58, 63], "aggfunc": 46, "aggreg": [3, 46], "aggsep": 46, "all": [1, 3, 11, 38, 52, 55, 61, 63, 65], "all_visit": 68, "allergi": 64, "allow": [5, 7, 9, 13, 15, 17, 63], "along": 1, "also": 24, "an": [1, 9, 11, 13, 15, 17, 20, 23, 47, 51, 55], "analysi": 1, "analyz": 54, "anchor_year": 15, "anchor_year_differ": 67, "anchor_year_group": 15, "ani": [11, 20, 28, 29, 30, 31, 34, 37, 38, 45, 50], "anoth": [11, 47, 55, 58], "any_": 38, "apacheapsvar": 64, "apachepatientresult": 64, "apachepredvar": 64, "api": [2, 3, 5, 7, 9, 13, 15, 16, 17, 63], "append": [0, 58], "appli": [0, 1, 15, 19, 20, 21, 22, 60], "approx": 63, "approxim": 15, "apr": 63, "april": 63, "ar": [5, 15, 24, 47], "arg": [53, 54, 58], "argument": [20, 28, 29, 30, 31, 34, 37, 38], "around": [3, 63], "ascend": [52, 65], "assign": 17, "assign_all_visit_id": 68, "assum": [24, 64, 66, 67, 68], "attent": 19, "attribut": 11, "automat": 5, "b": 38, "backend": 11, "base": [0, 3, 7, 9, 11, 13, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61], "batch": [11, 63], "batch_mod": [11, 67], "batch_siz": [11, 67], "becom": [11, 54], "befor": [1, 27, 47], "being": [19, 20, 21, 22, 26, 27, 29, 32, 33], "between": 63, "bin": 3, "binarize_col": [26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38], "binaryexpress": [11, 47], "black": 1, "bodi": 68, "bool": [5, 7, 9, 11, 13, 15, 17, 19, 20, 23, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 47, 51, 52, 55, 61], "boolean": [26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38], "both": 47, "build": [5, 63], "built": 3, "ca": 65, "call": 53, "callabl": 24, "can": [1, 3, 5, 7, 9, 13, 15, 17, 24, 38], "cannot": 54, "care": [9, 15], "care_sit": 68, "care_unit": [0, 9], "careplancareprovid": 64, "careplaneol": 64, "careplangener": 64, "careplango": 64, "careplaninfectiousdiseas": 64, "carevu": 63, "cartesian": 47, "cast": [0, 5, 7, 9, 11, 13, 15, 17, 65, 67], "cast_timestamp_col": [5, 7, 9, 13, 15, 17], "categori": 67, "cd": 3, "cdm_sourc": 68, "cdm_synthea10": 68, "certain": 54, "chain": [11, 58], "chart": [15, 63], "chart_ev": [66, 67], "chartev": [0, 13, 15, 66, 67], "chartevents_op": 66, "check": [1, 55], "check_exist": 55, "chronic": 63, "class": [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62], "clear": 11, "clear_data": [0, 11], "code": [2, 64, 66, 67, 68], "codestyl": 3, "cohort": 68, "cohort_definit": 68, "col": [19, 24, 25, 28, 29, 30, 31, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 45, 48, 50, 52, 56, 57, 59, 60], "col1": [3, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 36, 37, 38, 41, 42, 43, 44, 45, 47, 48, 50, 52, 55, 56, 57, 58, 59, 60], "col1_bool": [26, 27, 28, 29, 30, 31, 32, 33, 34, 36, 37, 38], "col1_new": [24, 45, 55], "col1_plus_1": [21, 22], "col1_plus_col2": [19, 20], "col1_plus_col3": 19, "col1_substr": 59, "col1_trim": 60, "col2": [3, 19, 20, 21, 22, 24, 25, 41, 42, 43, 45, 47, 48, 52, 56, 57, 58, 60], "col2_new": [24, 45], "col2_plus_1": 22, "col2_plus_col3": 19, "col2_trim": 60, "col3": [3, 19, 20, 47, 57], "collection_date_tim": 65, "column": [5, 7, 9, 11, 13, 15, 17, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 50, 52, 55, 56, 57, 59, 60], "combin": [19, 23, 51], "come": 57, "commit": 2, "common": 68, "commun": 63, "complet": 56, "compon": 44, "comput": 11, "concept": [17, 68], "concept_ancestor": 68, "concept_class": 68, "concept_relationship": 68, "concept_synonym": 68, "cond": [11, 47], "cond_kwarg": [28, 29, 30, 31, 34, 37, 38], "cond_op": [23, 51], "condit": [3, 11, 23, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 47, 51, 68], "condition_concept_id": 68, "condition_concept_nam": 68, "condition_era": 68, "condition_occurr": 68, "conditionafterd": [0, 65, 67, 68], "conditionbefored": [0, 65], "conditionendswith": 0, "conditionequ": [0, 64, 65, 66, 67], "conditiongreaterthan": 0, "conditionin": [0, 3, 23, 51], "conditioninmonth": 0, "conditioninyear": [0, 67], "conditionlessthan": [0, 66], "conditionlik": [0, 23, 51, 67], "conditionregexmatch": [0, 63], "conditionstartswith": 0, "conditionsubstr": [0, 3, 64, 65, 66, 67, 68], "config": [64, 66, 67, 68], "consid": 17, "construct": [9, 13, 15, 17, 20, 21], "contain": [11, 63], "contribut": 2, "convers": 25, "convert": [25, 47], "correspond": [17, 42, 43], "cost": 68, "count": [0, 46, 65, 68], "crd": [2, 6, 63], "creat": [3, 5, 11, 19, 20, 21, 22, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 60, 63], "csv": [11, 68], "current": 25, "custom": [5, 7, 9, 13, 15, 17, 66], "customlab": 64, "cycqueri": [0, 63, 64, 65, 66, 68], "d": 3, "dai": 21, "dask": 11, "data": [0, 3, 9, 11, 13, 15, 54, 67, 68], "databas": [2, 5, 7, 9, 10, 11, 13, 15, 17, 62, 63, 64, 65, 66, 67, 68], "dataclass": 11, "datafram": [3, 11], "dataset": [0, 5, 7, 9, 11, 13, 15, 17, 63], "datasetqueri": [0, 3, 7, 9, 13, 15, 17], "date": [25, 26, 27], "datetim": [5, 7, 9, 13, 15, 17, 21, 26, 27], "db": [0, 5, 65, 67], "dbm": [3, 5, 7, 9, 13, 15, 17, 64, 66, 67, 68], "dbname": 3, "dbsourc": 66, "dbtabl": [11, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 57, 58, 59, 60, 61], "dd": [26, 27], "death": 68, "default": [5, 11, 37], "defin": 11, "delirium_v4_0_1": 65, "delta": 21, "delta_kwarg": 20, "depend": 3, "derived_vari": 65, "descend": 52, "develop": 2, "device_exposur": 68, "df": 3, "di": 68, "diagnos": [0, 9, 13, 63], "diagnoses_icd": [0, 15, 67], "diagnoses_op": 67, "diagnosi": [9, 13, 15, 64], "diagnosisstr": 63, "dict": [46, 55], "dictionari": 46, "differ": [38, 47], "disabl": 24, "discharg": 63, "discharge_date_tim": 63, "discharge_to_concept_id": 68, "discharge_to_concept_nam": 68, "dischtim": 67, "distinct": [0, 3, 65], "doc": 3, "docstr": 1, "dod": 15, "domain": 68, "don": 1, "dose_era": 68, "downstream": [5, 7, 9, 13, 15, 17], "drop": [0, 58], "dropempti": [0, 65], "dropnul": [0, 3], "drug_era": 68, "drug_exposur": 68, "drug_strength": 68, "drugnam": 64, "dst_col": 17, "dt": 68, "dtype": 68, "dtype_backend": 11, "e": [3, 5, 44, 47, 50], "e501": 24, "each": [17, 24, 52, 63, 64, 66, 67, 68], "ehr": [3, 5, 62, 63, 68], "eicu": [0, 2, 63], "eicu_crd": 64, "eicuqueri": [0, 63], "electron": 3, "empti": [5, 42], "encount": [9, 63], "encounters_lab": 65, "encounters_per_sit": 65, "encounters_queri": 65, "end": [28, 58, 63], "env": 3, "environ": [1, 3], "episod": 68, "episode_ev": 68, "equal": [29, 30, 34], "er": 65, "erdiagnosi": 65, "erintervent": 65, "error": 1, "etl": 68, "event": [15, 63], "exampl": [19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 57, 58, 59, 60, 61, 63], "execut": [58, 64, 65, 66, 67, 68], "exist": [19, 20, 21, 22, 55, 60], "expens": 47, "expire_flag": 66, "express": 36, "extend": [0, 58], "extract": [44, 59, 64, 65, 66, 67, 68], "extract_str": 44, "extracttimestampcompon": 0, "f": [64, 65, 66, 67, 68], "fact_relationship": 68, "fals": [11, 19, 20, 23, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 47, 51, 52, 61, 65], "femal": 63, "fetch": [9, 11], "fhir_etl": 67, "fhir_trm": 67, "file": [1, 5, 11], "file_format": 11, "fill": [1, 45], "fill_valu": 45, "fillnul": 0, "filter": [3, 23, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 47, 51, 63], "final": 58, "final_visit_id": 68, "finish": [64, 65, 66, 67, 68], "first": [61, 64, 66, 67, 68], "fix": 1, "flag": 47, "float": [22, 25], "follow": [57, 68], "forget": 1, "format": [1, 11, 26, 27, 47, 68], "framework": 11, "from": [3, 9, 11, 15, 17, 44, 47, 55, 60, 63, 64, 66, 68], "func": 24, "function": [15, 19, 20, 21, 22, 24, 46, 53, 60, 63, 64, 65, 66, 67, 68], "further": 1, "g": [3, 5, 44, 47, 50], "gastroenter": 63, "gemini": [0, 2, 63], "geminiqueri": [0, 63], "genc_id": 65, "gender": [64, 66, 67], "gender_concept_nam": 68, "gener": [11, 68], "get": [2, 5, 7, 9, 11, 13, 15, 17, 40, 59, 63], "get_tabl": [0, 5, 7, 9, 13, 15, 17], "given": [45, 58], "glucos": 63, "googl": 1, "greater": [30, 34], "group": 46, "groupbi": 3, "groupby_col": 46, "groupbyaggreg": [0, 65], "guid": 1, "guidelin": [2, 3], "ha": 59, "hadm_id": [66, 67], "have": [5, 7, 9, 13, 15, 17, 31, 38, 47, 63], "hba1c": [23, 35, 51], "health": 3, "hemoglobin": 63, "henc": 3, "hint": 1, "hook": 2, "hospit": [15, 63], "hospital_num": 65, "hospitaldischargeyear": 64, "hospitalid": 64, "host": [3, 5, 7, 9, 13, 15, 17, 64, 65, 66, 67, 68], "hous": 68, "how": [63, 64, 66, 67, 68], "hpc": 65, "html": 3, "i": [1, 3, 5, 11, 15, 17, 19, 20, 21, 22, 24, 38, 42, 43, 47, 54, 63, 64, 66, 67, 68], "icd": 63, "icd_vers": 67, "icu": 15, "id": 17, "iii": [2, 12, 13, 63, 68], "imag": [0, 9], "implement": 53, "import": [3, 63], "includ": [3, 30, 34], "index": [11, 58, 59, 63], "index_col": [11, 67], "infecti": 63, "infer": 15, "info": [3, 9, 64, 65, 66, 67, 68], "inform": 44, "information_schema": [67, 68], "infusiondrug": 64, "initi": [11, 58], "input": 24, "insert": [0, 58], "instal": 2, "instanti": [5, 63], "instead": [23, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 51], "instruct": [64, 66, 67, 68], "int": [5, 11, 22, 25, 32, 33, 47, 49, 58, 59], "int64": 68, "intakeoutput": 64, "integ": 50, "integr": 3, "intend": 5, "interest": 1, "interfac": [0, 9, 13, 15, 17], "interv": 20, "ip_admin": [0, 9], "ipdiagnosi": 65, "ipintervent": 65, "ipscu": 65, "isout": [11, 47, 68], "issu": 1, "iv": [2, 14, 63], "jane": [23, 51], "john": [23, 51], "join": [0, 3, 11, 15, 64, 65, 66, 67, 68], "join_tabl": [11, 47, 64, 66, 67, 68], "join_table_col": [11, 47], "just": 38, "keep": [0, 47, 63], "kei": [46, 55, 58], "keyword": [28, 29, 30, 31, 34, 37, 38, 61, 63], "kwarg": [53, 54], "lab": [15, 63, 65], "lab_nam": [23, 35, 46, 51], "lab_name_agg": 46, "lab_name_bool": 35, "lab_op": 65, "label": [19, 20, 21, 22, 44, 46, 50, 60, 66, 67], "labev": [0, 13, 15, 66], "labnam": 64, "lambda": 24, "larg": 54, "last": 1, "later": 63, "least": 1, "left": 47, "len": [64, 65, 66, 67, 68], "less": [34, 63], "like": [3, 17, 35], "limit": [0, 11, 54, 63, 66, 67, 68], "line": 24, "link": 1, "list": [3, 5, 7, 9, 11, 13, 15, 17, 19, 20, 21, 22, 24, 25, 31, 32, 33, 38, 40, 41, 42, 43, 45, 46, 47, 48, 51, 52, 56, 57, 58, 60, 64, 65, 66, 67, 68], "list_column": [0, 5, 7, 9, 13, 15, 17], "list_custom_t": [0, 5, 7, 9, 13, 15, 17, 66], "list_schema": [0, 5, 7, 9, 13, 15, 17, 67, 68], "list_tabl": [0, 3, 5, 7, 9, 13, 15, 17, 64, 65, 68], "liter": [0, 11], "load": 68, "local": 3, "localhost": [3, 17, 64, 66, 67, 68], "locality_vari": 65, "locat": 68, "long": [24, 63], "long_titl": [66, 67], "lookup_cci": 65, "lookup_ccsr": 65, "lookup_diagnosi": 65, "lookup_er_administr": 65, "lookup_hospital_num": 65, "lookup_icd10_ca_descript": 65, "lookup_icd10_ca_to_ccsr": 65, "lookup_imag": 65, "lookup_ip_administr": 65, "lookup_ip_scu": 65, "lookup_lab_concept": 65, "lookup_pharmacy_concept": 65, "lookup_pharmacy_rout": 65, "lookup_phy_characterist": 65, "lookup_room_transf": 65, "lookup_statcan": 65, "lookup_transf": 65, "lookup_transfusion_concept": 65, "lookup_vitals_concept": 65, "lymphadenopathi": 63, "m": [3, 66], "mai": 63, "make": [3, 38], "male": 63, "manag": 5, "mani": [3, 63], "map": [5, 7, 9, 13, 15, 17, 55], "map_concept_ids_to_nam": [0, 17, 68], "march": 63, "match": [3, 36, 68], "measur": [0, 17, 63], "measurement_concept_nam": 68, "medic": 63, "metadata": 68, "method": [5, 7, 9, 11, 13, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 66], "microlab": 64, "million": 11, "mimic": [2, 12, 13, 14, 15, 63, 68], "mimic_fhir": 67, "mimiciii": [0, 66, 68], "mimiciiiqueri": [0, 63, 68], "mimiciv": [0, 67], "mimiciv_": 67, "mimiciv_deriv": 67, "mimiciv_hosp": 67, "mimiciv_icu": 67, "mimiciv_not": 67, "mimicivqueri": [0, 63], "mm": [26, 27], "mode": 11, "model": 68, "modul": [6, 8, 12, 14, 15], "month": [32, 44], "more": 3, "mortal": 63, "most": 63, "multipl": [9, 23, 24, 46, 51], "must": [25, 31, 32, 33, 38, 46], "mypi": 1, "mysql": 5, "name": [5, 7, 9, 13, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 45, 46, 47, 51, 55, 56, 57, 59, 68], "nbsphinx_allow_error": 3, "need": [1, 59], "neg": [19, 20], "negat": [26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38], "neither": 47, "new": [19, 20, 21, 22, 24, 45, 46, 50, 56, 59, 60], "new_col": 24, "new_col_label": [19, 20, 21, 22, 59, 60], "new_col_nam": [45, 59], "next": 67, "none": [5, 7, 9, 11, 13, 15, 17, 19, 20, 21, 22, 24, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 45, 46, 47, 52, 59, 60], "noqa": 24, "nor": 47, "not_": [26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38], "note": [5, 15, 64, 68], "note_nlp": 68, "notebook": [64, 65, 66, 67, 68], "null": [43, 45], "number": [5, 39, 49, 57, 63], "numer": 22, "numpi": 1, "nurseassess": 64, "nursecar": 64, "nursechart": 64, "object": [5, 9, 10, 11, 13, 15, 17, 20, 21, 24, 26, 27, 46, 53, 58, 63], "observ": [0, 17, 68], "observation_period": 68, "occur": 63, "omop": [0, 2, 63], "omopqueri": [0, 63], "on_to_typ": [11, 47], "onc": 1, "one": [38, 63], "onli": [38, 47, 48, 63], "op": [0, 3, 11, 15, 63, 64, 65, 66, 68], "op_": 58, "oper": [3, 11, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61], "oppos": 47, "option": [5, 7, 9, 11, 13, 15, 17, 19, 20, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 46, 47, 61], "order": [3, 11, 52, 54, 56, 57], "orderbi": [0, 65], "ordereddict": 58, "origin": 11, "orm": [5, 11, 63, 64, 65, 66, 67, 68], "other": [11, 19, 57, 58], "otherwis": [19, 20, 21, 22, 60], "our": 1, "out": 1, "outcom": 63, "outer": [11, 47], "over": 46, "pai": 19, "pair": 46, "panda": [3, 11, 68], "paramet": [5, 7, 9, 11, 13, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 57, 58, 59, 60, 61, 64, 66, 67, 68], "parquet": 11, "partit": [11, 63], "pass": [64, 66, 67, 68], "password": [3, 5, 7, 9, 13, 15, 17, 64, 65, 66, 67, 68], "pasthistori": 64, "path": [3, 5, 11], "patient": [0, 9, 15, 63], "patient_admiss": [66, 67], "patient_admissions_df": 67, "patient_admissions_diagnos": [66, 67], "patient_admissions_lab": 67, "patient_admissions_radiology_not": 67, "patient_admissions_vit": 67, "patient_chart_ev": 66, "patient_diagnos": 64, "patient_id_hash": 63, "patient_lab": [64, 66], "patient_med": 64, "patientunitstayid": 64, "pattern": 35, "payer_plan_period": 68, "pd": 68, "per": 63, "perform": [3, 11, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 57, 59, 60, 61, 68], "person": [0, 17, 68], "person_id": [39, 40, 46, 68], "person_visit": 68, "person_visits_condit": 68, "person_visits_conditions_measur": 68, "pharmaci": 65, "physicalexam": 64, "pip": 2, "place": 63, "pleas": 1, "poetri": 2, "pop": [0, 58], "port": [3, 5, 7, 9, 13, 15, 17, 64, 66, 67, 68], "possibli": [5, 7, 9, 13, 15, 17], "postgr": [64, 66, 67, 68], "postgresql": [2, 5, 17, 63, 64, 66, 67, 68], "potassium": 63, "pr": 1, "pre": 2, "prevent": 46, "print": [64, 65, 66, 67, 68], "procedur": 15, "procedure_occurr": 68, "procedures_icd": [0, 15], "process": [5, 7, 9, 11, 13, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 57, 59, 60, 61], "product": 47, "profil": [64, 65, 66, 67, 68], "properti": 11, "provid": [5, 7, 9, 13, 15, 17, 24, 38, 45, 46, 52, 62, 68], "public": [65, 67, 68], "pwd": [5, 64, 66, 67, 68], "pyarrow": [11, 68], "pylint": 24, "python": [1, 3, 63], "python3": 3, "qo": [3, 64, 65, 66, 67, 68], "queri": [2, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 23, 49, 51, 53, 58, 62, 63, 64, 65, 66, 67, 68], "querier": [3, 4, 7, 9, 13, 15, 17, 64, 65, 66, 67, 68], "queryinterfac": [0, 9, 13, 15, 17], "queryop": [0, 11, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 57, 58, 59, 60, 61], "quick": [64, 66, 67, 68], "quit": 54, "r": 67, "radiologi": [63, 65], "radiology_not": 67, "radiology_notes_op": 67, "random": 54, "randomizeord": 0, "rather": [19, 20], "raw": 63, "readi": [64, 65, 66, 67, 68], "receiv": 15, "recent": 63, "recogn": [5, 7, 9, 13, 15, 17], "recommend": 1, "record": [3, 63], "refer": 2, "regex": 36, "regular": 36, "relat": 3, "relationship": 68, "releas": 68, "remov": [42, 43], "renam": 0, "rename_map": 55, "reorder": [0, 57], "reorderaft": 0, "repo": 68, "report": [9, 63], "repres": 47, "respiratorycar": 64, "respiratorychart": 64, "result": [11, 58, 64, 66, 67, 68], "return": [5, 7, 9, 11, 13, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 63, 64, 65, 66, 68], "return_cond": [23, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 51], "room": 9, "room_transf": [0, 9], "roomtransf": 65, "routin": 63, "row": [11, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 42, 43, 49, 52, 54, 63, 65, 66, 67, 68], "ruff": 1, "run": [0, 1, 3, 5, 11, 63, 64, 65, 66, 68], "run_queri": [64, 65, 66, 67, 68], "sai": 47, "same": [46, 47], "save": [0, 11], "schema": [3, 5, 7, 9, 13, 15, 17, 67, 68], "schema_nam": [5, 7, 9, 13, 15, 17, 68], "schizophrenia": 63, "search": 63, "see": 3, "seen": 54, "select": [5, 7, 9, 11, 13, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 57, 58, 59, 60, 61, 67], "self": 5, "separ": 46, "sepsi": 63, "sequenc": [46, 58], "sequenti": [0, 3, 11, 64, 65, 66, 67, 68], "server": 11, "set": [3, 11, 63], "setup": [1, 64, 65, 66, 67, 68], "should": 11, "show": [1, 64, 65, 66, 67, 68], "showcas": 68, "sign": 63, "simpl": 3, "singl": 24, "size": 11, "slice": 58, "slow": 54, "so": 54, "sodium": 63, "sodium_test": 65, "some": [3, 19, 20, 21, 22, 26, 27, 28, 29, 30, 34, 37, 41, 42, 43, 52, 55, 60], "somecol_concept_id": 17, "somecol_concept_nam": 17, "somet": 3, "sort": [52, 63], "sort_index": 68, "sourc": [3, 5, 7, 9, 11, 13, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61], "source_to_concept_map": 68, "source_to_source_vocab_map": 68, "source_to_standard_vocab_map": 68, "specif": 3, "specifi": [17, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 42, 43, 46, 47, 48, 57, 60], "specimen": 68, "sphinx": 3, "sphinxopt": 3, "sql": [3, 5, 7, 9, 11, 13, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 57, 59, 60, 61, 63], "sqlalchemi": [3, 5, 7, 9, 13, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 57, 59, 60, 61, 63], "sqlite": 5, "src_col": 17, "src_tabl": 17, "standard": [5, 7, 9, 13, 15, 17], "start": [2, 37, 59], "start_index": 59, "static": 1, "stop": 59, "stop_index": 59, "str": [5, 7, 9, 11, 13, 15, 17, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 50, 52, 55, 56, 57, 58, 59, 60, 67], "string": [28, 37, 46, 47, 50, 59, 60, 63], "string_agg": 46, "string_aggfunc": 46, "style": [1, 47], "subclass": 5, "subject_id": [63, 66], "submit": 1, "subqueri": [5, 7, 9, 11, 13, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61], "subset": 63, "substr": [0, 3, 38, 63], "subtract": [19, 20], "successfulli": [64, 65, 66, 67, 68], "suggest": 47, "suppli": 15, "support": [6, 12, 14, 25], "sure": 3, "synthea": 68, "synthea_integration_test": 68, "system": 5, "t": 1, "tabl": [3, 5, 7, 9, 11, 13, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 57, 58, 59, 60, 61, 63, 64, 66, 68], "table1": [47, 61], "table2": [47, 61], "table_col": [11, 47], "table_nam": [5, 7, 9, 13, 15, 17], "take": [24, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 63], "teach": 63, "teachingstatu": 64, "templat": 1, "test": [3, 63], "test_type_map": 65, "text": 67, "than": [19, 20, 30, 34, 63], "thank": 1, "them": 11, "thi": [5, 22, 38, 46, 47, 64, 65, 66, 67, 68], "thu": 11, "time": 44, "timedelta": 21, "timestamp": [5, 7, 9, 13, 15, 17, 25, 26, 27, 32, 33, 44, 65], "timestamp_col": [26, 27, 32, 33, 44], "titl": 63, "to_datetim": 68, "togeth": 63, "too": 24, "tool": [1, 3, 63, 64, 65, 66, 67, 68], "total": 63, "transfer": 9, "transfus": 65, "treatment": 64, "trim": 0, "true": [3, 5, 7, 9, 11, 13, 15, 17, 19, 20, 35, 38, 52, 55, 61, 64, 65, 67, 68], "tupl": [11, 47], "tutori": 2, "two": [47, 58, 61], "type": [1, 5, 7, 9, 11, 13, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61], "type_": 25, "union": [0, 5, 11, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 57, 58, 59, 60], "union_al": [0, 11, 61], "union_t": 61, "unit": [3, 9], "up": 3, "updat": [64, 66, 67, 68], "upstream": 11, "us": [1, 2, 5, 7, 9, 11, 13, 15, 17, 20, 23, 40, 46, 47, 51, 54, 61, 63, 64, 65, 66, 68], "usenam": 3, "user": [3, 5, 7, 9, 13, 15, 17, 64, 65, 66, 67, 68], "usernam": [5, 64, 65, 66, 67, 68], "util": [64, 65, 66, 67, 68], "v1": [66, 68], "v2": [67, 68], "valu": [22, 29, 30, 31, 34, 42, 43, 45, 46, 47, 50], "value_count": 68, "valuenum": 63, "virtual": 1, "visit": 63, "visit_count": 46, "visit_detail": [0, 17, 68], "visit_id": 40, "visit_occurr": [0, 17, 68], "visit_occurrence_id": 68, "visit_start_d": 68, "visits_concept_map": 68, "visits_concept_mapped_di": 68, "visits_measur": 68, "vital": [63, 65], "vitalaperiod": 64, "vitalperiod": 64, "vocabulari": 68, "we": [1, 68], "weight": 68, "welcom": 3, "were": 63, "when": [5, 38, 47, 54], "where": [11, 59], "wherea": 19, "whether": [5, 7, 9, 11, 13, 15, 17, 38, 52, 55, 61], "which": [1, 5, 11, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 57, 59, 60, 61, 68], "whitespac": 60, "who": 63, "work": 19, "wrap": [9, 10, 11, 13, 15, 17], "wrapper": [3, 63], "write": 3, "x": 24, "y": 24, "year": [15, 32, 33, 44, 63, 68], "you": [1, 63], "your": 1, "yyyi": [26, 27]}, "titles": ["API Reference", "Contributing to cycquery", "Welcome to cycquery\u2019s documentation!", "cycquery", "cycquery.base", "cycquery.base.DatasetQuerier", "cycquery.eicu", "cycquery.eicu.EICUQuerier", "cycquery.gemini", "cycquery.gemini.GEMINIQuerier", "cycquery.interface", "cycquery.interface.QueryInterface", "cycquery.mimiciii", "cycquery.mimiciii.MIMICIIIQuerier", "cycquery.mimiciv", "cycquery.mimiciv.MIMICIVQuerier", "cycquery.omop", "cycquery.omop.OMOPQuerier", "cycquery.ops", "cycquery.ops.AddColumn", "cycquery.ops.AddDeltaColumn", "cycquery.ops.AddDeltaConstant", "cycquery.ops.AddNumeric", "cycquery.ops.And", "cycquery.ops.Apply", "cycquery.ops.Cast", "cycquery.ops.ConditionAfterDate", "cycquery.ops.ConditionBeforeDate", "cycquery.ops.ConditionEndsWith", "cycquery.ops.ConditionEquals", "cycquery.ops.ConditionGreaterThan", "cycquery.ops.ConditionIn", "cycquery.ops.ConditionInMonths", "cycquery.ops.ConditionInYears", "cycquery.ops.ConditionLessThan", "cycquery.ops.ConditionLike", "cycquery.ops.ConditionRegexMatch", "cycquery.ops.ConditionStartsWith", "cycquery.ops.ConditionSubstring", "cycquery.ops.Count", "cycquery.ops.Distinct", "cycquery.ops.Drop", "cycquery.ops.DropEmpty", "cycquery.ops.DropNulls", "cycquery.ops.ExtractTimestampComponent", "cycquery.ops.FillNull", "cycquery.ops.GroupByAggregate", "cycquery.ops.Join", "cycquery.ops.Keep", "cycquery.ops.Limit", "cycquery.ops.Literal", "cycquery.ops.Or", "cycquery.ops.OrderBy", "cycquery.ops.QueryOp", "cycquery.ops.RandomizeOrder", "cycquery.ops.Rename", "cycquery.ops.Reorder", "cycquery.ops.ReorderAfter", "cycquery.ops.Sequential", "cycquery.ops.Substring", "cycquery.ops.Trim", "cycquery.ops.Union", "cycquery", "Tutorials", "eICU-CRD tutorial", "GEMINI tutorial", "MIMIC-III tutorial", "MIMIC-IV tutorial", "OMOP tutorial"], "titleterms": {"": 2, "1": [64, 65, 66, 67, 68], "10": 67, "100": 64, "101": 65, "1a": 65, "1b": 65, "1c": 65, "2": [64, 66, 67, 68], "20": 66, "2009": 67, "2010": 68, "2014": 64, "2015": [64, 65, 67], "2016": 65, "2020": 68, "2021": 67, "2a": 65, "3": [64, 66, 67], "31": 65, "4": [64, 66, 67], "5": 67, "6": 67, "7": 67, "8": 67, "9": [66, 67], "And": 23, "Or": 51, "aado2": 66, "abov": 65, "addcolumn": 19, "adddeltacolumn": 20, "adddeltaconst": 21, "addnumer": 22, "admiss": [65, 67], "advanc": 67, "after": 68, "all": [64, 66, 67, 68], "api": [0, 62], "appli": 24, "approx": 67, "apr": 65, "april": 65, "base": [4, 5], "batch": 67, "between": 65, "carevu": 66, "cast": 25, "chart": 66, "chronic": 67, "code": 1, "commit": 1, "conditionafterd": 26, "conditionbefored": 27, "conditionendswith": 28, "conditionequ": 29, "conditiongreaterthan": 30, "conditionin": 31, "conditioninmonth": 32, "conditioninyear": 33, "conditionlessthan": 34, "conditionlik": 35, "conditionregexmatch": [36, 67], "conditionstartswith": 37, "conditionsubstr": 38, "contain": 67, "content": 2, "contribut": [1, 3], "count": 39, "crd": 64, "creat": 65, "cycqueri": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 67], "databas": 3, "dataset": [62, 65], "datasetqueri": 5, "develop": 3, "diagnos": [64, 66, 67, 68], "diagnosisstr": 64, "discharg": [64, 65], "discharge_date_tim": 65, "distinct": 40, "document": [2, 3], "drop": 41, "dropempti": 42, "dropnul": 43, "each": 65, "eicu": [6, 7, 64], "eicuqueri": [7, 64], "encount": [64, 65, 66, 67], "end": 68, "event": 66, "exampl": [64, 65, 66, 67, 68], "extracttimestampcompon": 44, "femal": [64, 66, 67, 68], "fillnul": 45, "filter": 67, "from": [65, 67], "gastroenter": 66, "gemini": [8, 9, 65], "geminiqueri": [9, 65], "get": [3, 64, 65, 66, 67, 68], "glucos": 64, "groupbyaggreg": 46, "guidelin": 1, "have": 66, "hemoglobin": 67, "hook": 1, "hospit": [64, 65], "how": 65, "icd": [66, 67], "iii": 66, "import": [64, 65, 66, 67, 68], "index": 67, "infecti": 67, "instal": 3, "instanti": [64, 65, 66, 67, 68], "interfac": [10, 11], "iv": 67, "join": 47, "keep": [48, 65], "keyword": 67, "lab": [64, 66, 67], "later": 67, "less": 66, "limit": [49, 64], "liter": 50, "long": [66, 67], "lymphadenopathi": 67, "mai": 65, "male": 66, "mani": 65, "march": 65, "measur": 68, "medic": 64, "mimic": [66, 67], "mimiciii": [12, 13], "mimiciiiqueri": [13, 66], "mimiciv": [14, 15], "mimicivqueri": [15, 67], "mortal": [66, 68], "most": 65, "number": 65, "occur": 67, "omop": [16, 17, 68], "omopqueri": [17, 68], "one": 65, "onli": 65, "op": [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 67], "orderbi": 52, "outcom": [66, 68], "partit": 67, "patient": [64, 65, 66, 67, 68], "patient_id_hash": 65, "per": 65, "pip": 3, "place": 65, "poetri": 3, "postgresql": 3, "potassium": [64, 66], "pre": 1, "queri": 3, "queryinterfac": 11, "queryop": 53, "radiologi": 67, "randomizeord": 54, "raw": 67, "recent": 65, "record": 65, "refer": 0, "renam": 55, "reorder": 56, "reorderaft": 57, "report": 67, "return": 67, "routin": 67, "row": 64, "run": 67, "schizophrenia": [64, 67], "search": 64, "sepsi": 68, "sequenti": 58, "set": 65, "sign": 67, "sodium": 65, "sort": 65, "sql": 67, "start": 3, "string": 67, "subject_id": 67, "subset": 65, "substr": [59, 64], "tabl": 65, "take": 65, "teach": 64, "test": [64, 65, 66, 67], "than": 66, "titl": [66, 67], "togeth": 67, "total": 65, "trim": 60, "tutori": [63, 64, 65, 66, 67, 68], "union": 61, "us": [3, 67], "valuenum": 66, "visit": 68, "vital": 67, "welcom": 2, "were": 65, "who": 65, "year": [64, 67]}})
\ No newline at end of file
+Search.setIndex({"alltitles": {"API Reference": [[0, "api-reference"]], "Coding guidelines": [[1, "coding-guidelines"]], "Contents:": [[2, null]], "Contributing": [[3, "contributing"]], "Contributing to cycquery": [[1, "contributing-to-cycquery"]], "Example 1. Get all female patients discharged in 2014 (limit to 100 rows).": [[64, "Example-1.-Get-all-female-patients-discharged-in-2014-(limit-to-100-rows)."]], "Example 1. Get all male patients with a mortality outcome.": [[66, "Example-1.-Get-all-male-patients-with-a-mortality-outcome."]], "Example 1. Get all patient admissions from 2021 or later (approx year of admission)": [[67, "Example-1.-Get-all-patient-admissions-from-2021-or-later-(approx-year-of-admission)"]], "Example 1. Get all patient visits in or after 2010.": [[68, "Example-1.-Get-all-patient-visits-in-or-after-2010."]], "Example 1. Get all patient visits that ended in a mortality outcome in or after 2010.": [[68, "Example-1.-Get-all-patient-visits-that-ended-in-a-mortality-outcome-in-or-after-2010."]], "Example 1a. Create a table with only one hospitalization per patient, keeping the most recent encounter for each patient. Sort the dataset by patient_id_hashed and discharge_date_time, and then keep the recent record.": [[65, "Example-1a.-Create-a-table-with-only-one-hospitalization-per-patient,-keeping-the-most-recent-encounter-for-each-patient.-Sort-the-dataset-by-patient_id_hashed-and-discharge_date_time,-and-then-keep-the-recent-record."]], "Example 1b. From the above set of encounters, take a subset of patients who were discharged between April 1, 2015 and March 31, 2016.": [[65, "Example-1b.-From-the-above-set-of-encounters,-take-a-subset-of-patients-who-were-discharged-between-April-1,-2015-and-March-31,-2016."]], "Example 1c. From the above set of encounters, get the total number of admissions for each hospital.": [[65, "Example-1c.-From-the-above-set-of-encounters,-get-the-total-number-of-admissions-for-each-hospital."]], "Example 2. Get all female patient encounters with diagnoses (gastroenteritis in ICD-9 long title).": [[66, "Example-2.-Get-all-female-patient-encounters-with-diagnoses-(gastroenteritis-in-ICD-9-long-title)."]], "Example 2. Get all measurements for female patient visits with sepsis diagnoses, that ended in a mortality outcome.": [[68, "Example-2.-Get-all-measurements-for-female-patient-visits-with-sepsis-diagnoses,-that-ended-in-a-mortality-outcome."]], "Example 2. Get all patient encounters with diagnoses (schizophrenia in ICD-10 long title), in the year 2015.": [[67, "Example-2.-Get-all-patient-encounters-with-diagnoses-(schizophrenia-in-ICD-10-long-title),-in-the-year-2015."]], "Example 2. Get all patient encounters with diagnoses (schizophrenia in diagnosisstring), discharged in the year 2015.": [[64, "Example-2.-Get-all-patient-encounters-with-diagnoses-(schizophrenia-in-diagnosisstring),-discharged-in-the-year-2015."]], "Example 2. Get measurements for all visits in or after 2020.": [[68, "Example-2.-Get-measurements-for-all-visits-in-or-after-2020."]], "Example 2a. How many sodium tests were placed between Apr 1, 2015 and May 31, 2015 at hospital 101?": [[65, "Example-2a.-How-many-sodium-tests-were-placed-between-Apr-1,-2015-and-May-31,-2015-at-hospital-101?"]], "Example 3. Advanced - uses ConditionRegexMatch from cycquery.ops. Get all patient encounters with diagnoses (ICD-9 long title contains schizophrenia and chronic ), in the year 2015.": [[67, "Example-3.-Advanced---uses-ConditionRegexMatch-from-cycquery.ops.-Get-all-patient-encounters-with-diagnoses-(ICD-9-long-title-contains-schizophrenia-and-chronic-),-in-the-year-2015."]], "Example 3. Get potassium lab tests for female patients.": [[66, "Example-3.-Get-potassium-lab-tests-for-female-patients."]], "Example 3. Get potassium lab tests for patients discharged in the year 2014, for all teaching hospitals.": [[64, "Example-3.-Get-potassium-lab-tests-for-patients-discharged-in-the-year-2014,-for-all-teaching-hospitals."]], "Example 4. Get AaDO2 carevue chart events for male patients that have a valuenum of less than 20.": [[66, "Example-4.-Get-AaDO2-carevue-chart-events-for-male-patients-that-have-a-valuenum-of-less-than-20."]], "Example 4. Get glucose medications (substring search) for female patients discharged in 2014.": [[64, "Example-4.-Get-glucose-medications-(substring-search)-for-female-patients-discharged-in-2014."]], "Example 4. Get routine vital signs for patients from year 2015.": [[67, "Example-4.-Get-routine-vital-signs-for-patients-from-year-2015."]], "Example 5. Get hemoglobin lab tests for patients from year 2009.": [[67, "Example-5.-Get-hemoglobin-lab-tests-for-patients-from-year-2009."]], "Example 6. Get radiology reports and filter on keywords lymphadenopathy and infectious occurring together from year 2009.": [[67, "Example-6.-Get-radiology-reports-and-filter-on-keywords-lymphadenopathy-and-infectious-occurring-together-from-year-2009."]], "Example 7. Get all female patient encounters from year 2015, and return batches partitioned and indexed on subject_id.": [[67, "Example-7.-Get-all-female-patient-encounters-from-year-2015,-and-return-batches-partitioned-and-indexed-on-subject_id."]], "Example 8. Running a raw SQL string.": [[67, "Example-8.-Running-a-raw-SQL-string."]], "GEMINI tutorial": [[65, "GEMINI-tutorial"]], "Imports and instantiate EICUQuerier": [[64, "Imports-and-instantiate-EICUQuerier"]], "Imports and instantiate GEMINIQuerier.": [[65, "Imports-and-instantiate-GEMINIQuerier."]], "Imports and instantiate MIMICIIIQuerier": [[66, "Imports-and-instantiate-MIMICIIIQuerier"]], "Imports and instantiate MIMICIVQuerier": [[67, "Imports-and-instantiate-MIMICIVQuerier"]], "Imports and instantiate OMOPQuerier.": [[68, "Imports-and-instantiate-OMOPQuerier."], [68, "id1"]], "Installing cycquery using pip": [[3, "installing-cycquery-using-pip"]], "MIMIC-III tutorial": [[66, "MIMIC-III-tutorial"]], "MIMIC-IV tutorial": [[67, "MIMIC-IV-tutorial"]], "OMOP tutorial": [[68, "OMOP-tutorial"]], "Pre-commit hooks": [[1, "pre-commit-hooks"]], "Query postgresql database": [[3, "query-postgresql-database"]], "Tutorials": [[63, "tutorials"]], "Using poetry": [[3, "using-poetry"]], "Welcome to cycquery\u2019s documentation!": [[2, "welcome-to-cycquery-s-documentation"]], "cycquery": [[3, "cycquery"], [62, "module-cycquery"]], "cycquery.base": [[4, "module-cycquery.base"]], "cycquery.base.DatasetQuerier": [[5, "cycquery-base-datasetquerier"]], "cycquery.eicu": [[6, "module-cycquery.eicu"]], "cycquery.eicu.EICUQuerier": [[7, "cycquery-eicu-eicuquerier"]], "cycquery.gemini": [[8, "module-cycquery.gemini"]], "cycquery.gemini.GEMINIQuerier": [[9, "cycquery-gemini-geminiquerier"]], "cycquery.interface": [[10, "module-cycquery.interface"]], "cycquery.interface.QueryInterface": [[11, "cycquery-interface-queryinterface"]], "cycquery.mimiciii": [[12, "module-cycquery.mimiciii"]], "cycquery.mimiciii.MIMICIIIQuerier": [[13, "cycquery-mimiciii-mimiciiiquerier"]], "cycquery.mimiciv": [[14, "module-cycquery.mimiciv"]], "cycquery.mimiciv.MIMICIVQuerier": [[15, "cycquery-mimiciv-mimicivquerier"]], "cycquery.omop": [[16, "module-cycquery.omop"]], "cycquery.omop.OMOPQuerier": [[17, "cycquery-omop-omopquerier"]], "cycquery.ops": [[18, "module-cycquery.ops"]], "cycquery.ops.AddColumn": [[19, "cycquery-ops-addcolumn"]], "cycquery.ops.AddDeltaColumn": [[20, "cycquery-ops-adddeltacolumn"]], "cycquery.ops.AddDeltaConstant": [[21, "cycquery-ops-adddeltaconstant"]], "cycquery.ops.AddNumeric": [[22, "cycquery-ops-addnumeric"]], "cycquery.ops.And": [[23, "cycquery-ops-and"]], "cycquery.ops.Apply": [[24, "cycquery-ops-apply"]], "cycquery.ops.Cast": [[25, "cycquery-ops-cast"]], "cycquery.ops.ConditionAfterDate": [[26, "cycquery-ops-conditionafterdate"]], "cycquery.ops.ConditionBeforeDate": [[27, "cycquery-ops-conditionbeforedate"]], "cycquery.ops.ConditionEndsWith": [[28, "cycquery-ops-conditionendswith"]], "cycquery.ops.ConditionEquals": [[29, "cycquery-ops-conditionequals"]], "cycquery.ops.ConditionGreaterThan": [[30, "cycquery-ops-conditiongreaterthan"]], "cycquery.ops.ConditionIn": [[31, "cycquery-ops-conditionin"]], "cycquery.ops.ConditionInMonths": [[32, "cycquery-ops-conditioninmonths"]], "cycquery.ops.ConditionInYears": [[33, "cycquery-ops-conditioninyears"]], "cycquery.ops.ConditionLessThan": [[34, "cycquery-ops-conditionlessthan"]], "cycquery.ops.ConditionLike": [[35, "cycquery-ops-conditionlike"]], "cycquery.ops.ConditionRegexMatch": [[36, "cycquery-ops-conditionregexmatch"]], "cycquery.ops.ConditionStartsWith": [[37, "cycquery-ops-conditionstartswith"]], "cycquery.ops.ConditionSubstring": [[38, "cycquery-ops-conditionsubstring"]], "cycquery.ops.Count": [[39, "cycquery-ops-count"]], "cycquery.ops.Distinct": [[40, "cycquery-ops-distinct"]], "cycquery.ops.Drop": [[41, "cycquery-ops-drop"]], "cycquery.ops.DropEmpty": [[42, "cycquery-ops-dropempty"]], "cycquery.ops.DropNulls": [[43, "cycquery-ops-dropnulls"]], "cycquery.ops.ExtractTimestampComponent": [[44, "cycquery-ops-extracttimestampcomponent"]], "cycquery.ops.FillNull": [[45, "cycquery-ops-fillnull"]], "cycquery.ops.GroupByAggregate": [[46, "cycquery-ops-groupbyaggregate"]], "cycquery.ops.Join": [[47, "cycquery-ops-join"]], "cycquery.ops.Keep": [[48, "cycquery-ops-keep"]], "cycquery.ops.Limit": [[49, "cycquery-ops-limit"]], "cycquery.ops.Literal": [[50, "cycquery-ops-literal"]], "cycquery.ops.Or": [[51, "cycquery-ops-or"]], "cycquery.ops.OrderBy": [[52, "cycquery-ops-orderby"]], "cycquery.ops.QueryOp": [[53, "cycquery-ops-queryop"]], "cycquery.ops.RandomizeOrder": [[54, "cycquery-ops-randomizeorder"]], "cycquery.ops.Rename": [[55, "cycquery-ops-rename"]], "cycquery.ops.Reorder": [[56, "cycquery-ops-reorder"]], "cycquery.ops.ReorderAfter": [[57, "cycquery-ops-reorderafter"]], "cycquery.ops.Sequential": [[58, "cycquery-ops-sequential"]], "cycquery.ops.Substring": [[59, "cycquery-ops-substring"]], "cycquery.ops.Trim": [[60, "cycquery-ops-trim"]], "cycquery.ops.Union": [[61, "cycquery-ops-union"]], "dataset APIs": [[62, "dataset-apis"]], "eICU-CRD tutorial": [[64, "eICU-CRD-tutorial"]], "\ud83d\udc23 Getting Started": [[3, "getting-started"]], "\ud83d\udcda Documentation": [[3, "documentation"]], "\ud83e\uddd1\ud83c\udfff\u200d\ud83d\udcbb Developing": [[3, "developing"]]}, "docnames": ["api", "contributing", "index", "intro", "reference/api/_autosummary/cycquery.base", "reference/api/_autosummary/cycquery.base.DatasetQuerier", "reference/api/_autosummary/cycquery.eicu", "reference/api/_autosummary/cycquery.eicu.EICUQuerier", "reference/api/_autosummary/cycquery.gemini", "reference/api/_autosummary/cycquery.gemini.GEMINIQuerier", "reference/api/_autosummary/cycquery.interface", "reference/api/_autosummary/cycquery.interface.QueryInterface", "reference/api/_autosummary/cycquery.mimiciii", "reference/api/_autosummary/cycquery.mimiciii.MIMICIIIQuerier", "reference/api/_autosummary/cycquery.mimiciv", "reference/api/_autosummary/cycquery.mimiciv.MIMICIVQuerier", "reference/api/_autosummary/cycquery.omop", "reference/api/_autosummary/cycquery.omop.OMOPQuerier", "reference/api/_autosummary/cycquery.ops", "reference/api/_autosummary/cycquery.ops.AddColumn", "reference/api/_autosummary/cycquery.ops.AddDeltaColumn", "reference/api/_autosummary/cycquery.ops.AddDeltaConstant", "reference/api/_autosummary/cycquery.ops.AddNumeric", "reference/api/_autosummary/cycquery.ops.And", "reference/api/_autosummary/cycquery.ops.Apply", "reference/api/_autosummary/cycquery.ops.Cast", "reference/api/_autosummary/cycquery.ops.ConditionAfterDate", "reference/api/_autosummary/cycquery.ops.ConditionBeforeDate", "reference/api/_autosummary/cycquery.ops.ConditionEndsWith", "reference/api/_autosummary/cycquery.ops.ConditionEquals", "reference/api/_autosummary/cycquery.ops.ConditionGreaterThan", "reference/api/_autosummary/cycquery.ops.ConditionIn", "reference/api/_autosummary/cycquery.ops.ConditionInMonths", "reference/api/_autosummary/cycquery.ops.ConditionInYears", "reference/api/_autosummary/cycquery.ops.ConditionLessThan", "reference/api/_autosummary/cycquery.ops.ConditionLike", "reference/api/_autosummary/cycquery.ops.ConditionRegexMatch", "reference/api/_autosummary/cycquery.ops.ConditionStartsWith", "reference/api/_autosummary/cycquery.ops.ConditionSubstring", "reference/api/_autosummary/cycquery.ops.Count", "reference/api/_autosummary/cycquery.ops.Distinct", "reference/api/_autosummary/cycquery.ops.Drop", "reference/api/_autosummary/cycquery.ops.DropEmpty", "reference/api/_autosummary/cycquery.ops.DropNulls", "reference/api/_autosummary/cycquery.ops.ExtractTimestampComponent", "reference/api/_autosummary/cycquery.ops.FillNull", "reference/api/_autosummary/cycquery.ops.GroupByAggregate", "reference/api/_autosummary/cycquery.ops.Join", "reference/api/_autosummary/cycquery.ops.Keep", "reference/api/_autosummary/cycquery.ops.Limit", "reference/api/_autosummary/cycquery.ops.Literal", "reference/api/_autosummary/cycquery.ops.Or", "reference/api/_autosummary/cycquery.ops.OrderBy", "reference/api/_autosummary/cycquery.ops.QueryOp", "reference/api/_autosummary/cycquery.ops.RandomizeOrder", "reference/api/_autosummary/cycquery.ops.Rename", "reference/api/_autosummary/cycquery.ops.Reorder", "reference/api/_autosummary/cycquery.ops.ReorderAfter", "reference/api/_autosummary/cycquery.ops.Sequential", "reference/api/_autosummary/cycquery.ops.Substring", "reference/api/_autosummary/cycquery.ops.Trim", "reference/api/_autosummary/cycquery.ops.Union", "reference/api/cycquery", "tutorials", "tutorials/eicu", "tutorials/gemini", "tutorials/mimiciii", "tutorials/mimiciv", "tutorials/omop"], "envversion": {"nbsphinx": 4, "sphinx": 61, "sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.intersphinx": 1, "sphinx.ext.todo": 2, "sphinx.ext.viewcode": 1}, "filenames": ["api.rst", "contributing.rst", "index.rst", "intro.rst", "reference/api/_autosummary/cycquery.base.rst", "reference/api/_autosummary/cycquery.base.DatasetQuerier.rst", "reference/api/_autosummary/cycquery.eicu.rst", "reference/api/_autosummary/cycquery.eicu.EICUQuerier.rst", "reference/api/_autosummary/cycquery.gemini.rst", "reference/api/_autosummary/cycquery.gemini.GEMINIQuerier.rst", "reference/api/_autosummary/cycquery.interface.rst", "reference/api/_autosummary/cycquery.interface.QueryInterface.rst", "reference/api/_autosummary/cycquery.mimiciii.rst", "reference/api/_autosummary/cycquery.mimiciii.MIMICIIIQuerier.rst", "reference/api/_autosummary/cycquery.mimiciv.rst", "reference/api/_autosummary/cycquery.mimiciv.MIMICIVQuerier.rst", "reference/api/_autosummary/cycquery.omop.rst", "reference/api/_autosummary/cycquery.omop.OMOPQuerier.rst", "reference/api/_autosummary/cycquery.ops.rst", "reference/api/_autosummary/cycquery.ops.AddColumn.rst", "reference/api/_autosummary/cycquery.ops.AddDeltaColumn.rst", "reference/api/_autosummary/cycquery.ops.AddDeltaConstant.rst", "reference/api/_autosummary/cycquery.ops.AddNumeric.rst", "reference/api/_autosummary/cycquery.ops.And.rst", "reference/api/_autosummary/cycquery.ops.Apply.rst", "reference/api/_autosummary/cycquery.ops.Cast.rst", "reference/api/_autosummary/cycquery.ops.ConditionAfterDate.rst", "reference/api/_autosummary/cycquery.ops.ConditionBeforeDate.rst", "reference/api/_autosummary/cycquery.ops.ConditionEndsWith.rst", "reference/api/_autosummary/cycquery.ops.ConditionEquals.rst", "reference/api/_autosummary/cycquery.ops.ConditionGreaterThan.rst", "reference/api/_autosummary/cycquery.ops.ConditionIn.rst", "reference/api/_autosummary/cycquery.ops.ConditionInMonths.rst", "reference/api/_autosummary/cycquery.ops.ConditionInYears.rst", "reference/api/_autosummary/cycquery.ops.ConditionLessThan.rst", "reference/api/_autosummary/cycquery.ops.ConditionLike.rst", "reference/api/_autosummary/cycquery.ops.ConditionRegexMatch.rst", "reference/api/_autosummary/cycquery.ops.ConditionStartsWith.rst", "reference/api/_autosummary/cycquery.ops.ConditionSubstring.rst", "reference/api/_autosummary/cycquery.ops.Count.rst", "reference/api/_autosummary/cycquery.ops.Distinct.rst", "reference/api/_autosummary/cycquery.ops.Drop.rst", "reference/api/_autosummary/cycquery.ops.DropEmpty.rst", "reference/api/_autosummary/cycquery.ops.DropNulls.rst", "reference/api/_autosummary/cycquery.ops.ExtractTimestampComponent.rst", "reference/api/_autosummary/cycquery.ops.FillNull.rst", "reference/api/_autosummary/cycquery.ops.GroupByAggregate.rst", "reference/api/_autosummary/cycquery.ops.Join.rst", "reference/api/_autosummary/cycquery.ops.Keep.rst", "reference/api/_autosummary/cycquery.ops.Limit.rst", "reference/api/_autosummary/cycquery.ops.Literal.rst", "reference/api/_autosummary/cycquery.ops.Or.rst", "reference/api/_autosummary/cycquery.ops.OrderBy.rst", "reference/api/_autosummary/cycquery.ops.QueryOp.rst", "reference/api/_autosummary/cycquery.ops.RandomizeOrder.rst", "reference/api/_autosummary/cycquery.ops.Rename.rst", "reference/api/_autosummary/cycquery.ops.Reorder.rst", "reference/api/_autosummary/cycquery.ops.ReorderAfter.rst", "reference/api/_autosummary/cycquery.ops.Sequential.rst", "reference/api/_autosummary/cycquery.ops.Substring.rst", "reference/api/_autosummary/cycquery.ops.Trim.rst", "reference/api/_autosummary/cycquery.ops.Union.rst", "reference/api/cycquery.rst", "tutorials.rst", "tutorials/eicu.ipynb", "tutorials/gemini.ipynb", "tutorials/mimiciii.ipynb", "tutorials/mimiciv.ipynb", "tutorials/omop.ipynb"], "indexentries": {"__add__() (sequential method)": [[58, "cycquery.ops.Sequential.__add__", false]], "__call__() (addcolumn method)": [[19, "cycquery.ops.AddColumn.__call__", false]], "__call__() (adddeltacolumn method)": [[20, "cycquery.ops.AddDeltaColumn.__call__", false]], "__call__() (adddeltaconstant method)": [[21, "cycquery.ops.AddDeltaConstant.__call__", false]], "__call__() (addnumeric method)": [[22, "cycquery.ops.AddNumeric.__call__", false]], "__call__() (and method)": [[23, "cycquery.ops.And.__call__", false]], "__call__() (apply method)": [[24, "cycquery.ops.Apply.__call__", false]], "__call__() (cast method)": [[25, "cycquery.ops.Cast.__call__", false]], "__call__() (conditionafterdate method)": [[26, "cycquery.ops.ConditionAfterDate.__call__", false]], "__call__() (conditionbeforedate method)": [[27, "cycquery.ops.ConditionBeforeDate.__call__", false]], "__call__() (conditionendswith method)": [[28, "cycquery.ops.ConditionEndsWith.__call__", false]], "__call__() (conditionequals method)": [[29, "cycquery.ops.ConditionEquals.__call__", false]], "__call__() (conditiongreaterthan method)": [[30, "cycquery.ops.ConditionGreaterThan.__call__", false]], "__call__() (conditionin method)": [[31, "cycquery.ops.ConditionIn.__call__", false]], "__call__() (conditioninmonths method)": [[32, "cycquery.ops.ConditionInMonths.__call__", false]], "__call__() (conditioninyears method)": [[33, "cycquery.ops.ConditionInYears.__call__", false]], "__call__() (conditionlessthan method)": [[34, "cycquery.ops.ConditionLessThan.__call__", false]], "__call__() (conditionlike method)": [[35, "cycquery.ops.ConditionLike.__call__", false]], "__call__() (conditionregexmatch method)": [[36, "cycquery.ops.ConditionRegexMatch.__call__", false]], "__call__() (conditionstartswith method)": [[37, "cycquery.ops.ConditionStartsWith.__call__", false]], "__call__() (conditionsubstring method)": [[38, "cycquery.ops.ConditionSubstring.__call__", false]], "__call__() (count method)": [[39, "cycquery.ops.Count.__call__", false]], "__call__() (distinct method)": [[40, "cycquery.ops.Distinct.__call__", false]], "__call__() (drop method)": [[41, "cycquery.ops.Drop.__call__", false]], "__call__() (dropempty method)": [[42, "cycquery.ops.DropEmpty.__call__", false]], "__call__() (dropnulls method)": [[43, "cycquery.ops.DropNulls.__call__", false]], "__call__() (extracttimestampcomponent method)": [[44, "cycquery.ops.ExtractTimestampComponent.__call__", false]], "__call__() (fillnull method)": [[45, "cycquery.ops.FillNull.__call__", false]], "__call__() (groupbyaggregate method)": [[46, "cycquery.ops.GroupByAggregate.__call__", false]], "__call__() (join method)": [[47, "cycquery.ops.Join.__call__", false]], "__call__() (keep method)": [[48, "cycquery.ops.Keep.__call__", false]], "__call__() (limit method)": [[49, "cycquery.ops.Limit.__call__", false]], "__call__() (literal method)": [[50, "cycquery.ops.Literal.__call__", false]], "__call__() (or method)": [[51, "cycquery.ops.Or.__call__", false]], "__call__() (orderby method)": [[52, "cycquery.ops.OrderBy.__call__", false]], "__call__() (queryop method)": [[53, "cycquery.ops.QueryOp.__call__", false]], "__call__() (randomizeorder method)": [[54, "cycquery.ops.RandomizeOrder.__call__", false]], "__call__() (rename method)": [[55, "cycquery.ops.Rename.__call__", false]], "__call__() (reorder method)": [[56, "cycquery.ops.Reorder.__call__", false]], "__call__() (reorderafter method)": [[57, "cycquery.ops.ReorderAfter.__call__", false]], "__call__() (sequential method)": [[58, "cycquery.ops.Sequential.__call__", false]], "__call__() (substring method)": [[59, "cycquery.ops.Substring.__call__", false]], "__call__() (trim method)": [[60, "cycquery.ops.Trim.__call__", false]], "__call__() (union method)": [[61, "cycquery.ops.Union.__call__", false]], "__init__() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.__init__", false]], "__init__() (sequential method)": [[58, "cycquery.ops.Sequential.__init__", false]], "addcolumn (class in cycquery.ops)": [[19, "cycquery.ops.AddColumn", false]], "adddeltacolumn (class in cycquery.ops)": [[20, "cycquery.ops.AddDeltaColumn", false]], "adddeltaconstant (class in cycquery.ops)": [[21, "cycquery.ops.AddDeltaConstant", false]], "addnumeric (class in cycquery.ops)": [[22, "cycquery.ops.AddNumeric", false]], "and (class in cycquery.ops)": [[23, "cycquery.ops.And", false]], "append() (sequential method)": [[58, "cycquery.ops.Sequential.append", false]], "apply (class in cycquery.ops)": [[24, "cycquery.ops.Apply", false]], "care_units() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.care_units", false]], "cast (class in cycquery.ops)": [[25, "cycquery.ops.Cast", false]], "chartevents() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.chartevents", false]], "chartevents() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.chartevents", false]], "clear_data() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.clear_data", false]], "conditionafterdate (class in cycquery.ops)": [[26, "cycquery.ops.ConditionAfterDate", false]], "conditionbeforedate (class in cycquery.ops)": [[27, "cycquery.ops.ConditionBeforeDate", false]], "conditionendswith (class in cycquery.ops)": [[28, "cycquery.ops.ConditionEndsWith", false]], "conditionequals (class in cycquery.ops)": [[29, "cycquery.ops.ConditionEquals", false]], "conditiongreaterthan (class in cycquery.ops)": [[30, "cycquery.ops.ConditionGreaterThan", false]], "conditionin (class in cycquery.ops)": [[31, "cycquery.ops.ConditionIn", false]], "conditioninmonths (class in cycquery.ops)": [[32, "cycquery.ops.ConditionInMonths", false]], "conditioninyears (class in cycquery.ops)": [[33, "cycquery.ops.ConditionInYears", false]], "conditionlessthan (class in cycquery.ops)": [[34, "cycquery.ops.ConditionLessThan", false]], "conditionlike (class in cycquery.ops)": [[35, "cycquery.ops.ConditionLike", false]], "conditionregexmatch (class in cycquery.ops)": [[36, "cycquery.ops.ConditionRegexMatch", false]], "conditionstartswith (class in cycquery.ops)": [[37, "cycquery.ops.ConditionStartsWith", false]], "conditionsubstring (class in cycquery.ops)": [[38, "cycquery.ops.ConditionSubstring", false]], "count (class in cycquery.ops)": [[39, "cycquery.ops.Count", false]], "cycquery": [[62, "module-cycquery", false]], "cycquery.base": [[4, "module-cycquery.base", false]], "cycquery.eicu": [[6, "module-cycquery.eicu", false]], "cycquery.gemini": [[8, "module-cycquery.gemini", false]], "cycquery.interface": [[10, "module-cycquery.interface", false]], "cycquery.mimiciii": [[12, "module-cycquery.mimiciii", false]], "cycquery.mimiciv": [[14, "module-cycquery.mimiciv", false]], "cycquery.omop": [[16, "module-cycquery.omop", false]], "cycquery.ops": [[18, "module-cycquery.ops", false]], "data (queryinterface property)": [[11, "cycquery.interface.QueryInterface.data", false]], "datasetquerier (class in cycquery.base)": [[5, "cycquery.base.DatasetQuerier", false]], "db (datasetquerier attribute)": [[5, "cycquery.base.DatasetQuerier.db", false]], "diagnoses() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.diagnoses", false]], "diagnoses() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.diagnoses", false]], "diagnoses_icd() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.diagnoses_icd", false]], "distinct (class in cycquery.ops)": [[40, "cycquery.ops.Distinct", false]], "drop (class in cycquery.ops)": [[41, "cycquery.ops.Drop", false]], "dropempty (class in cycquery.ops)": [[42, "cycquery.ops.DropEmpty", false]], "dropnulls (class in cycquery.ops)": [[43, "cycquery.ops.DropNulls", false]], "eicuquerier (class in cycquery.eicu)": [[7, "cycquery.eicu.EICUQuerier", false]], "extend() (sequential method)": [[58, "cycquery.ops.Sequential.extend", false]], "extracttimestampcomponent (class in cycquery.ops)": [[44, "cycquery.ops.ExtractTimestampComponent", false]], "fillnull (class in cycquery.ops)": [[45, "cycquery.ops.FillNull", false]], "geminiquerier (class in cycquery.gemini)": [[9, "cycquery.gemini.GEMINIQuerier", false]], "get_table() (datasetquerier method)": [[5, "cycquery.base.DatasetQuerier.get_table", false]], "get_table() (eicuquerier method)": [[7, "cycquery.eicu.EICUQuerier.get_table", false]], "get_table() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.get_table", false]], "get_table() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.get_table", false]], "get_table() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.get_table", false]], "get_table() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.get_table", false]], "groupbyaggregate (class in cycquery.ops)": [[46, "cycquery.ops.GroupByAggregate", false]], "imaging() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.imaging", false]], "insert() (sequential method)": [[58, "cycquery.ops.Sequential.insert", false]], "ip_admin() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.ip_admin", false]], "join (class in cycquery.ops)": [[47, "cycquery.ops.Join", false]], "join() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.join", false]], "keep (class in cycquery.ops)": [[48, "cycquery.ops.Keep", false]], "labevents() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.labevents", false]], "labevents() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.labevents", false]], "limit (class in cycquery.ops)": [[49, "cycquery.ops.Limit", false]], "list_columns() (datasetquerier method)": [[5, "cycquery.base.DatasetQuerier.list_columns", false]], "list_columns() (eicuquerier method)": [[7, "cycquery.eicu.EICUQuerier.list_columns", false]], "list_columns() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.list_columns", false]], "list_columns() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.list_columns", false]], "list_columns() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.list_columns", false]], "list_columns() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.list_columns", false]], "list_custom_tables() (datasetquerier method)": [[5, "cycquery.base.DatasetQuerier.list_custom_tables", false]], "list_custom_tables() (eicuquerier method)": [[7, "cycquery.eicu.EICUQuerier.list_custom_tables", false]], "list_custom_tables() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.list_custom_tables", false]], "list_custom_tables() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.list_custom_tables", false]], "list_custom_tables() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.list_custom_tables", false]], "list_custom_tables() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.list_custom_tables", false]], "list_schemas() (datasetquerier method)": [[5, "cycquery.base.DatasetQuerier.list_schemas", false]], "list_schemas() (eicuquerier method)": [[7, "cycquery.eicu.EICUQuerier.list_schemas", false]], "list_schemas() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.list_schemas", false]], "list_schemas() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.list_schemas", false]], "list_schemas() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.list_schemas", false]], "list_schemas() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.list_schemas", false]], "list_tables() (datasetquerier method)": [[5, "cycquery.base.DatasetQuerier.list_tables", false]], "list_tables() (eicuquerier method)": [[7, "cycquery.eicu.EICUQuerier.list_tables", false]], "list_tables() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.list_tables", false]], "list_tables() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.list_tables", false]], "list_tables() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.list_tables", false]], "list_tables() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.list_tables", false]], "literal (class in cycquery.ops)": [[50, "cycquery.ops.Literal", false]], "map_concept_ids_to_name() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.map_concept_ids_to_name", false]], "measurement() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.measurement", false]], "mimiciiiquerier (class in cycquery.mimiciii)": [[13, "cycquery.mimiciii.MIMICIIIQuerier", false]], "mimicivquerier (class in cycquery.mimiciv)": [[15, "cycquery.mimiciv.MIMICIVQuerier", false]], "module": [[4, "module-cycquery.base", false], [6, "module-cycquery.eicu", false], [8, "module-cycquery.gemini", false], [10, "module-cycquery.interface", false], [12, "module-cycquery.mimiciii", false], [14, "module-cycquery.mimiciv", false], [16, "module-cycquery.omop", false], [18, "module-cycquery.ops", false], [62, "module-cycquery", false]], "observation() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.observation", false]], "omopquerier (class in cycquery.omop)": [[17, "cycquery.omop.OMOPQuerier", false]], "ops() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.ops", false]], "or (class in cycquery.ops)": [[51, "cycquery.ops.Or", false]], "orderby (class in cycquery.ops)": [[52, "cycquery.ops.OrderBy", false]], "patients() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.patients", false]], "person() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.person", false]], "pop() (sequential method)": [[58, "cycquery.ops.Sequential.pop", false]], "procedures_icd() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.procedures_icd", false]], "queryinterface (class in cycquery.interface)": [[11, "cycquery.interface.QueryInterface", false]], "queryop (class in cycquery.ops)": [[53, "cycquery.ops.QueryOp", false]], "randomizeorder (class in cycquery.ops)": [[54, "cycquery.ops.RandomizeOrder", false]], "rename (class in cycquery.ops)": [[55, "cycquery.ops.Rename", false]], "reorder (class in cycquery.ops)": [[56, "cycquery.ops.Reorder", false]], "reorderafter (class in cycquery.ops)": [[57, "cycquery.ops.ReorderAfter", false]], "room_transfer() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.room_transfer", false]], "run() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.run", false]], "save() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.save", false]], "sequential (class in cycquery.ops)": [[58, "cycquery.ops.Sequential", false]], "substring (class in cycquery.ops)": [[59, "cycquery.ops.Substring", false]], "trim (class in cycquery.ops)": [[60, "cycquery.ops.Trim", false]], "union (class in cycquery.ops)": [[61, "cycquery.ops.Union", false]], "union() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.union", false]], "union_all() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.union_all", false]], "visit_detail() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.visit_detail", false]], "visit_occurrence() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.visit_occurrence", false]]}, "objects": {"": [[62, 0, 0, "-", "cycquery"]], "cycquery": [[4, 0, 0, "-", "base"], [6, 0, 0, "-", "eicu"], [8, 0, 0, "-", "gemini"], [10, 0, 0, "-", "interface"], [12, 0, 0, "-", "mimiciii"], [14, 0, 0, "-", "mimiciv"], [16, 0, 0, "-", "omop"], [18, 0, 0, "-", "ops"]], "cycquery.base": [[5, 1, 1, "", "DatasetQuerier"]], "cycquery.base.DatasetQuerier": [[5, 2, 1, "", "db"], [5, 3, 1, "", "get_table"], [5, 3, 1, "", "list_columns"], [5, 3, 1, "", "list_custom_tables"], [5, 3, 1, "", "list_schemas"], [5, 3, 1, "", "list_tables"]], "cycquery.eicu": [[7, 1, 1, "", "EICUQuerier"]], "cycquery.eicu.EICUQuerier": [[7, 3, 1, "", "get_table"], [7, 3, 1, "", "list_columns"], [7, 3, 1, "", "list_custom_tables"], [7, 3, 1, "", "list_schemas"], [7, 3, 1, "", "list_tables"]], "cycquery.gemini": [[9, 1, 1, "", "GEMINIQuerier"]], "cycquery.gemini.GEMINIQuerier": [[9, 3, 1, "", "care_units"], [9, 3, 1, "", "diagnoses"], [9, 3, 1, "", "get_table"], [9, 3, 1, "", "imaging"], [9, 3, 1, "", "ip_admin"], [9, 3, 1, "", "list_columns"], [9, 3, 1, "", "list_custom_tables"], [9, 3, 1, "", "list_schemas"], [9, 3, 1, "", "list_tables"], [9, 3, 1, "", "room_transfer"]], "cycquery.interface": [[11, 1, 1, "", "QueryInterface"]], "cycquery.interface.QueryInterface": [[11, 3, 1, "", "__init__"], [11, 3, 1, "", "clear_data"], [11, 4, 1, "", "data"], [11, 3, 1, "", "join"], [11, 3, 1, "", "ops"], [11, 3, 1, "", "run"], [11, 3, 1, "", "save"], [11, 3, 1, "", "union"], [11, 3, 1, "", "union_all"]], "cycquery.mimiciii": [[13, 1, 1, "", "MIMICIIIQuerier"]], "cycquery.mimiciii.MIMICIIIQuerier": [[13, 3, 1, "", "chartevents"], [13, 3, 1, "", "diagnoses"], [13, 3, 1, "", "get_table"], [13, 3, 1, "", "labevents"], [13, 3, 1, "", "list_columns"], [13, 3, 1, "", "list_custom_tables"], [13, 3, 1, "", "list_schemas"], [13, 3, 1, "", "list_tables"]], "cycquery.mimiciv": [[15, 1, 1, "", "MIMICIVQuerier"]], "cycquery.mimiciv.MIMICIVQuerier": [[15, 3, 1, "", "chartevents"], [15, 3, 1, "", "diagnoses_icd"], [15, 3, 1, "", "get_table"], [15, 3, 1, "", "labevents"], [15, 3, 1, "", "list_columns"], [15, 3, 1, "", "list_custom_tables"], [15, 3, 1, "", "list_schemas"], [15, 3, 1, "", "list_tables"], [15, 3, 1, "", "patients"], [15, 3, 1, "", "procedures_icd"]], "cycquery.omop": [[17, 1, 1, "", "OMOPQuerier"]], "cycquery.omop.OMOPQuerier": [[17, 3, 1, "", "get_table"], [17, 3, 1, "", "list_columns"], [17, 3, 1, "", "list_custom_tables"], [17, 3, 1, "", "list_schemas"], [17, 3, 1, "", "list_tables"], [17, 3, 1, "", "map_concept_ids_to_name"], [17, 3, 1, "", "measurement"], [17, 3, 1, "", "observation"], [17, 3, 1, "", "person"], [17, 3, 1, "", "visit_detail"], [17, 3, 1, "", "visit_occurrence"]], "cycquery.ops": [[19, 1, 1, "", "AddColumn"], [20, 1, 1, "", "AddDeltaColumn"], [21, 1, 1, "", "AddDeltaConstant"], [22, 1, 1, "", "AddNumeric"], [23, 1, 1, "", "And"], [24, 1, 1, "", "Apply"], [25, 1, 1, "", "Cast"], [26, 1, 1, "", "ConditionAfterDate"], [27, 1, 1, "", "ConditionBeforeDate"], [28, 1, 1, "", "ConditionEndsWith"], [29, 1, 1, "", "ConditionEquals"], [30, 1, 1, "", "ConditionGreaterThan"], [31, 1, 1, "", "ConditionIn"], [32, 1, 1, "", "ConditionInMonths"], [33, 1, 1, "", "ConditionInYears"], [34, 1, 1, "", "ConditionLessThan"], [35, 1, 1, "", "ConditionLike"], [36, 1, 1, "", "ConditionRegexMatch"], [37, 1, 1, "", "ConditionStartsWith"], [38, 1, 1, "", "ConditionSubstring"], [39, 1, 1, "", "Count"], [40, 1, 1, "", "Distinct"], [41, 1, 1, "", "Drop"], [42, 1, 1, "", "DropEmpty"], [43, 1, 1, "", "DropNulls"], [44, 1, 1, "", "ExtractTimestampComponent"], [45, 1, 1, "", "FillNull"], [46, 1, 1, "", "GroupByAggregate"], [47, 1, 1, "", "Join"], [48, 1, 1, "", "Keep"], [49, 1, 1, "", "Limit"], [50, 1, 1, "", "Literal"], [51, 1, 1, "", "Or"], [52, 1, 1, "", "OrderBy"], [53, 1, 1, "", "QueryOp"], [54, 1, 1, "", "RandomizeOrder"], [55, 1, 1, "", "Rename"], [56, 1, 1, "", "Reorder"], [57, 1, 1, "", "ReorderAfter"], [58, 1, 1, "", "Sequential"], [59, 1, 1, "", "Substring"], [60, 1, 1, "", "Trim"], [61, 1, 1, "", "Union"]], "cycquery.ops.AddColumn": [[19, 3, 1, "", "__call__"]], "cycquery.ops.AddDeltaColumn": [[20, 3, 1, "", "__call__"]], "cycquery.ops.AddDeltaConstant": [[21, 3, 1, "", "__call__"]], "cycquery.ops.AddNumeric": [[22, 3, 1, "", "__call__"]], "cycquery.ops.And": [[23, 3, 1, "", "__call__"]], "cycquery.ops.Apply": [[24, 3, 1, "", "__call__"]], "cycquery.ops.Cast": [[25, 3, 1, "", "__call__"]], "cycquery.ops.ConditionAfterDate": [[26, 3, 1, "", "__call__"]], "cycquery.ops.ConditionBeforeDate": [[27, 3, 1, "", "__call__"]], "cycquery.ops.ConditionEndsWith": [[28, 3, 1, "", "__call__"]], "cycquery.ops.ConditionEquals": [[29, 3, 1, "", "__call__"]], "cycquery.ops.ConditionGreaterThan": [[30, 3, 1, "", "__call__"]], "cycquery.ops.ConditionIn": [[31, 3, 1, "", "__call__"]], "cycquery.ops.ConditionInMonths": [[32, 3, 1, "", "__call__"]], "cycquery.ops.ConditionInYears": [[33, 3, 1, "", "__call__"]], "cycquery.ops.ConditionLessThan": [[34, 3, 1, "", "__call__"]], "cycquery.ops.ConditionLike": [[35, 3, 1, "", "__call__"]], "cycquery.ops.ConditionRegexMatch": [[36, 3, 1, "", "__call__"]], "cycquery.ops.ConditionStartsWith": [[37, 3, 1, "", "__call__"]], "cycquery.ops.ConditionSubstring": [[38, 3, 1, "", "__call__"]], "cycquery.ops.Count": [[39, 3, 1, "", "__call__"]], "cycquery.ops.Distinct": [[40, 3, 1, "", "__call__"]], "cycquery.ops.Drop": [[41, 3, 1, "", "__call__"]], "cycquery.ops.DropEmpty": [[42, 3, 1, "", "__call__"]], "cycquery.ops.DropNulls": [[43, 3, 1, "", "__call__"]], "cycquery.ops.ExtractTimestampComponent": [[44, 3, 1, "", "__call__"]], "cycquery.ops.FillNull": [[45, 3, 1, "", "__call__"]], "cycquery.ops.GroupByAggregate": [[46, 3, 1, "", "__call__"]], "cycquery.ops.Join": [[47, 3, 1, "", "__call__"]], "cycquery.ops.Keep": [[48, 3, 1, "", "__call__"]], "cycquery.ops.Limit": [[49, 3, 1, "", "__call__"]], "cycquery.ops.Literal": [[50, 3, 1, "", "__call__"]], "cycquery.ops.Or": [[51, 3, 1, "", "__call__"]], "cycquery.ops.OrderBy": [[52, 3, 1, "", "__call__"]], "cycquery.ops.QueryOp": [[53, 3, 1, "", "__call__"]], "cycquery.ops.RandomizeOrder": [[54, 3, 1, "", "__call__"]], "cycquery.ops.Rename": [[55, 3, 1, "", "__call__"]], "cycquery.ops.Reorder": [[56, 3, 1, "", "__call__"]], "cycquery.ops.ReorderAfter": [[57, 3, 1, "", "__call__"]], "cycquery.ops.Sequential": [[58, 3, 1, "", "__add__"], [58, 3, 1, "", "__call__"], [58, 3, 1, "", "__init__"], [58, 3, 1, "", "append"], [58, 3, 1, "", "extend"], [58, 3, 1, "", "insert"], [58, 3, 1, "", "pop"]], "cycquery.ops.Substring": [[59, 3, 1, "", "__call__"]], "cycquery.ops.Trim": [[60, 3, 1, "", "__call__"]], "cycquery.ops.Union": [[61, 3, 1, "", "__call__"]]}, "objnames": {"0": ["py", "module", "Python module"], "1": ["py", "class", "Python class"], "2": ["py", "attribute", "Python attribute"], "3": ["py", "method", "Python method"], "4": ["py", "property", "Python property"]}, "objtypes": {"0": "py:module", "1": "py:class", "2": "py:attribute", "3": "py:method", "4": "py:property"}, "terms": {"": [5, 11, 17, 24, 45, 64, 65, 66, 67, 68], "0": [14, 45, 59, 64, 65, 66, 67, 68], "00": 66, "01": [26, 27, 65, 67, 68], "014086": 67, "03": [64, 65], "032112": 64, "04": [65, 66], "05": 65, "06": [66, 67], "069": [64, 67], "071": [64, 67], "08": [66, 67], "09": [65, 67], "093352": 65, "1": [3, 11, 21, 22, 24, 26, 27, 29, 30, 31, 32, 34, 45, 50, 63], "10": [49, 63, 64, 66, 68], "100": [63, 66, 67, 68], "1000": 67, "1000000": 11, "101": 63, "11": [64, 66, 67, 68], "129": 67, "131": 67, "14": 67, "141": 64, "143": 64, "144": 66, "145693": 65, "15": 68, "157255": 66, "17": [65, 66], "170236": 64, "18": 67, "189734": 65, "19": 65, "193": 66, "1a": 63, "1b": 63, "1c": 63, "2": [3, 14, 22, 24, 31, 32, 59, 63, 65], "20": [63, 67, 68], "2009": 63, "2010": 63, "2011": 68, "2012": 68, "2013": 68, "2014": [63, 68], "2015": [63, 68], "2016": [63, 68], "2017": 68, "2018": 68, "2019": [33, 68], "2020": [26, 27, 33, 63], "2021": [63, 68], "2022": 68, "2023": [65, 68], "2024": [64, 66, 67, 68], "204972": 66, "21": [65, 67, 68], "229999": 67, "23": 68, "241206": 67, "247393": 66, "25": [67, 68], "253": 67, "255": 67, "26": [65, 68], "276970": 68, "279": 67, "280": 68, "281": 67, "2a": 63, "3": [63, 65, 68], "30": 67, "31": 63, "310790": 67, "312": 66, "312438": 67, "323": 67, "325": 67, "32567": 65, "34": 68, "36": 67, "37": [64, 66], "38": 64, "39": [64, 65, 66, 67, 68], "4": [63, 65, 68], "40": 64, "407": 68, "410": 68, "42": 68, "44": 64, "449": 65, "45": 65, "485932": 67, "486850": 64, "492": 67, "5": [63, 64, 65, 66, 68], "506": 65, "51": 65, "52": [65, 68], "534": 64, "536": 64, "5432": [3, 17, 64, 66, 67, 68], "549": 68, "568863": 68, "579": 64, "581": 64, "5815": 68, "591": 65, "592": [64, 65], "6": [63, 65, 66, 68], "629": 67, "631": 67, "656": 67, "658": 67, "662382": 66, "672": 66, "673": 66, "675141": 65, "691683": 68, "7": [63, 65, 68], "714619": 67, "797": 68, "799": 68, "8": [63, 68], "808": 66, "814": 65, "815": 65, "82": 67, "856": 65, "857": 65, "892611": 68, "9": 63, "902": 65, "903": 65, "91": 67, "923233": 64, "9305": 65, "932": 68, "934": 68, "939296": 65, "946": 67, "948": 67, "957": 66, "957633": 67, "959": 66, "968": [66, 68], "969": 66, "992": 68, "994": 68, "999": 67, "A": [10, 11, 21, 26, 27, 47], "And": [0, 67], "For": [1, 17], "If": [1, 17, 19, 20, 21, 22, 24, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 45, 46, 47, 52, 60], "In": 3, "It": [3, 24, 63], "No": [11, 68], "Not": 5, "OR": 51, "Or": 0, "The": [1, 3, 5, 11, 15, 20, 24, 48, 62, 63, 64, 66, 67, 68], "To": 1, "__add__": [0, 58], "__call__": [0, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61], "__init__": [0, 11, 58], "aado2": 63, "abov": 63, "abstract": 53, "accord": [17, 64, 66, 67, 68], "accordingli": [64, 66, 67, 68], "activ": 3, "ad": [11, 19, 20, 21, 22, 58], "add": [19, 20, 21, 22, 50, 58], "add_to": [19, 20, 21, 22], "addcolumn": 0, "adddeltacolumn": [0, 67], "adddeltaconst": 0, "addnumer": 0, "address": 5, "adjust": 15, "admdad": 65, "admiss": [63, 66], "admissiondrug": 64, "admissiondx": 64, "admittim": 67, "admitting_concept_id": 68, "advanc": 63, "after": [5, 15, 24, 26, 57, 58, 63], "aggfunc": 46, "aggreg": [3, 46], "aggsep": 46, "all": [1, 3, 11, 38, 52, 55, 61, 63, 65], "all_visit": 68, "allergi": 64, "allow": [5, 7, 9, 13, 15, 17, 63], "along": 1, "also": 24, "ampicillin": 68, "an": [1, 9, 11, 13, 15, 17, 20, 23, 47, 51, 55], "analysi": 1, "analyz": 54, "anchor_year": 15, "anchor_year_differ": 67, "anchor_year_group": 15, "ani": [11, 20, 28, 29, 30, 31, 34, 37, 38, 45, 50], "anoth": [11, 47, 55, 58], "any_": 38, "apacheapsvar": 64, "apachepatientresult": 64, "apachepredvar": 64, "api": [2, 3, 5, 7, 9, 13, 15, 16, 17, 63], "append": [0, 58], "appli": [0, 1, 15, 19, 20, 21, 22, 60], "approx": 63, "approxim": 15, "apr": 63, "april": 63, "ar": [5, 15, 24, 47], "arg": [53, 54, 58], "argument": [20, 28, 29, 30, 31, 34, 37, 38], "around": [3, 63], "ascend": [52, 65], "assign": 17, "assign_all_visit_id": 68, "assum": [24, 64, 66, 67, 68], "attent": 19, "attribut": 11, "autolog": 68, "automat": 5, "b": 38, "backend": 11, "bacteria": 68, "base": [0, 3, 7, 9, 11, 13, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61], "batch": [11, 63], "batch_mod": [11, 67], "batch_siz": [11, 67], "becom": [11, 54], "befor": [1, 27, 47], "being": [19, 20, 21, 22, 26, 27, 29, 32, 33], "between": 63, "bin": 3, "binarize_col": [26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38], "binaryexpress": [11, 47], "black": 1, "blood": 68, "bool": [5, 7, 9, 11, 13, 15, 17, 19, 20, 23, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 47, 51, 52, 55, 61], "boolean": [26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38], "both": 47, "build": [5, 63], "built": 3, "ca": 65, "call": 53, "callabl": 24, "can": [1, 3, 5, 7, 9, 13, 15, 17, 24, 38], "cannot": 54, "care": [9, 15], "care_sit": 68, "care_unit": [0, 9], "careplancareprovid": 64, "careplaneol": 64, "careplangener": 64, "careplango": 64, "careplaninfectiousdiseas": 64, "carevu": 63, "cartesian": 47, "cast": [0, 5, 7, 9, 11, 13, 15, 17, 65, 67], "cast_timestamp_col": [5, 7, 9, 13, 15, 17], "categori": 67, "cd": 3, "cdm_sourc": 68, "cdm_synthea10": 68, "cefazolin": 68, "cefepim": 68, "ceftazidim": 68, "ceftriaxon": 68, "cefuroxim": 68, "certain": 54, "chain": [11, 58], "chart": [15, 63], "chart_ev": [66, 67], "chartev": [0, 13, 15, 66, 67], "chartevents_op": 66, "check": [1, 55], "check_exist": 55, "chronic": 63, "ciprofloxacin": 68, "class": [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62], "clear": 11, "clear_data": [0, 11], "code": [2, 64, 66, 67, 68], "codestyl": 3, "cohort": 68, "cohort_definit": 68, "col": [19, 24, 25, 28, 29, 30, 31, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 45, 48, 50, 52, 56, 57, 59, 60], "col1": [3, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 36, 37, 38, 41, 42, 43, 44, 45, 47, 48, 50, 52, 55, 56, 57, 58, 59, 60], "col1_bool": [26, 27, 28, 29, 30, 31, 32, 33, 34, 36, 37, 38], "col1_new": [24, 45, 55], "col1_plus_1": [21, 22], "col1_plus_col2": [19, 20], "col1_plus_col3": 19, "col1_substr": 59, "col1_trim": 60, "col2": [3, 19, 20, 21, 22, 24, 25, 41, 42, 43, 45, 47, 48, 52, 56, 57, 58, 60], "col2_new": [24, 45], "col2_plus_1": 22, "col2_plus_col3": 19, "col2_trim": 60, "col3": [3, 19, 20, 47, 57], "collection_date_tim": 65, "column": [5, 7, 9, 11, 13, 15, 17, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 50, 52, 55, 56, 57, 59, 60], "coma": 68, "combin": [19, 23, 51], "come": 57, "commit": 2, "common": 68, "commun": 63, "complet": 56, "compon": 44, "comput": 11, "concept": [17, 68], "concept_ancestor": 68, "concept_class": 68, "concept_relationship": 68, "concept_synonym": 68, "cond": [11, 47], "cond_kwarg": [28, 29, 30, 31, 34, 37, 38], "cond_op": [23, 51], "condit": [3, 11, 23, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 47, 51, 68], "condition_concept_id": 68, "condition_concept_nam": 68, "condition_era": 68, "condition_occurr": 68, "conditionafterd": [0, 65, 67, 68], "conditionbefored": [0, 65], "conditionendswith": 0, "conditionequ": [0, 64, 65, 66, 67], "conditiongreaterthan": 0, "conditionin": [0, 3, 23, 51], "conditioninmonth": 0, "conditioninyear": [0, 67], "conditionlessthan": [0, 66], "conditionlik": [0, 23, 51, 67], "conditionregexmatch": [0, 63], "conditionstartswith": 0, "conditionsubstr": [0, 3, 64, 65, 66, 67, 68], "config": [64, 66, 67, 68], "consid": 17, "construct": [9, 13, 15, 17, 20, 21], "contain": [11, 63], "contribut": 2, "convers": 25, "convert": [25, 47], "correspond": [17, 42, 43], "cost": 68, "count": [0, 46, 65, 68], "crd": [2, 6, 63], "creat": [3, 5, 11, 19, 20, 21, 22, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 60, 63], "csv": [11, 68], "cultur": 68, "current": 25, "custom": [5, 7, 9, 13, 15, 17, 66], "customlab": 64, "cycqueri": [0, 63, 64, 65, 66, 68], "d": 3, "dai": 21, "dask": 11, "data": [0, 3, 9, 11, 13, 15, 54, 67, 68], "databas": [2, 5, 7, 9, 10, 11, 13, 15, 17, 62, 63, 64, 65, 66, 67, 68], "dataclass": 11, "datafram": [3, 11], "dataset": [0, 5, 7, 9, 11, 13, 15, 17, 63], "datasetqueri": [0, 3, 7, 9, 13, 15, 17], "date": [25, 26, 27], "datetim": [5, 7, 9, 13, 15, 17, 21, 26, 27], "db": [0, 5, 65, 67], "dbm": [3, 5, 7, 9, 13, 15, 17, 64, 66, 67, 68], "dbname": 3, "dbsourc": 66, "dbtabl": [11, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 57, 58, 59, 60, 61], "dd": [26, 27], "death": 68, "default": [5, 11, 37], "defin": 11, "delirium_v4_0_1": 65, "delta": 21, "delta_kwarg": 20, "depend": 3, "derived_vari": 65, "descend": 52, "develop": 2, "device_exposur": 68, "df": 3, "di": 68, "diagnos": [0, 9, 13, 63], "diagnoses_icd": [0, 15, 67], "diagnoses_op": 67, "diagnosi": [9, 13, 15, 64], "diagnosisstr": 63, "dict": [46, 55], "dictionari": 46, "differ": [38, 47], "diffus": 68, "disabl": 24, "discharg": 63, "discharge_date_tim": 63, "discharge_to_concept_id": 68, "discharge_to_concept_nam": 68, "dischtim": 67, "disk": 68, "distinct": [0, 3, 65], "doc": 3, "docstr": 1, "dod": 15, "domain": 68, "don": 1, "dose_era": 68, "downstream": [5, 7, 9, 13, 15, 17], "drop": [0, 58], "dropempti": [0, 65], "dropnul": [0, 3], "drug_era": 68, "drug_exposur": 68, "drug_strength": 68, "drugnam": 64, "dst_col": 17, "dt": 68, "dtype": 68, "dtype_backend": 11, "e": [3, 5, 44, 47, 50], "e501": 24, "each": [17, 24, 52, 63, 64, 66, 67, 68], "ehr": [3, 5, 62, 63, 68], "eicu": [0, 2, 63], "eicu_crd": 64, "eicuqueri": [0, 63], "electron": 3, "empti": [5, 42], "encount": [9, 63], "encounters_lab": 65, "encounters_per_sit": 65, "encounters_queri": 65, "end": [28, 58, 63], "env": 3, "environ": [1, 3], "episod": 68, "episode_ev": 68, "equal": [29, 30, 34], "er": 65, "erdiagnosi": 65, "erintervent": 65, "error": 1, "etl": 68, "event": [15, 63], "exampl": [19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 57, 58, 59, 60, 61, 63], "execut": [58, 64, 65, 66, 67, 68], "exist": [19, 20, 21, 22, 55, 60], "expens": 47, "expire_flag": 66, "express": 36, "extend": [0, 58], "extract": [44, 59, 64, 65, 66, 67, 68], "extract_str": 44, "extracttimestampcompon": 0, "f": [64, 65, 66, 67, 68], "fact_relationship": 68, "fals": [11, 19, 20, 23, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 47, 51, 52, 61, 65], "femal": 63, "fetch": [9, 11], "fhir_etl": 67, "fhir_trm": 67, "file": [1, 5, 11], "file_format": 11, "fill": [1, 45], "fill_valu": 45, "fillnul": 0, "filter": [3, 23, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 47, 51, 63], "final": 58, "final_visit_id": 68, "finish": [64, 65, 66, 67, 68], "first": [61, 64, 66, 67, 68], "fix": 1, "flag": 47, "float": [22, 25], "follow": [57, 68], "forget": 1, "format": [1, 11, 26, 27, 47, 68], "framework": 11, "from": [3, 9, 11, 15, 17, 44, 47, 55, 60, 63, 64, 66, 68], "func": 24, "function": [15, 19, 20, 21, 22, 24, 46, 53, 60, 63, 64, 65, 66, 67, 68], "further": 1, "g": [3, 5, 44, 47, 50], "gastroenter": 63, "gemini": [0, 2, 63], "geminiqueri": [0, 63], "genc_id": 65, "gender": [64, 66, 67], "gender_concept_nam": 68, "gener": [11, 68], "gentamicin": 68, "get": [2, 5, 7, 9, 11, 13, 15, 17, 40, 59, 63], "get_tabl": [0, 5, 7, 9, 13, 15, 17], "given": [45, 58], "glasgow": 68, "glucos": 63, "googl": 1, "greater": [30, 34], "group": 46, "groupbi": 3, "groupby_col": 46, "groupbyaggreg": [0, 65], "guid": 1, "guidelin": [2, 3], "ha": 59, "hadm_id": [66, 67], "have": [5, 7, 9, 13, 15, 17, 31, 38, 47, 63], "hba1c": [23, 35, 51], "health": 3, "hemoglobin": 63, "henc": 3, "hint": 1, "hook": 2, "hospit": [15, 63], "hospital_num": 65, "hospitaldischargeyear": 64, "hospitalid": 64, "host": [3, 5, 7, 9, 13, 15, 17, 64, 65, 66, 67, 68], "hous": 68, "how": [63, 64, 66, 67, 68], "hpc": 65, "html": 3, "i": [1, 3, 5, 11, 15, 17, 19, 20, 21, 22, 24, 38, 42, 43, 47, 54, 63, 64, 66, 67, 68], "icd": 63, "icd_vers": 67, "icu": 15, "id": 17, "identifi": 68, "iii": [2, 12, 13, 63, 68], "imag": [0, 9], "imipenem": 68, "implement": 53, "import": [3, 63], "includ": [3, 30, 34], "index": [11, 58, 59, 63], "index_col": [11, 67], "infecti": 63, "infer": 15, "info": [3, 9, 64, 65, 66, 67, 68], "inform": 44, "information_schema": [67, 68], "infusiondrug": 64, "initi": [11, 58], "input": 24, "insert": [0, 58], "instal": 2, "instanti": [5, 63], "instead": [23, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 51], "instruct": [64, 66, 67, 68], "int": [5, 11, 22, 25, 32, 33, 47, 49, 58, 59], "int64": 68, "intakeoutput": 64, "integ": 50, "integr": 3, "intend": 5, "interest": 1, "interfac": [0, 9, 13, 15, 17], "interv": 20, "ip_admin": [0, 9], "ipdiagnosi": 65, "ipintervent": 65, "ipscu": 65, "isout": [11, 47, 68], "issu": 1, "iv": [2, 14, 63], "jane": [23, 51], "john": [23, 51], "join": [0, 3, 11, 15, 64, 65, 66, 67, 68], "join_tabl": [11, 47, 64, 66, 67, 68], "join_table_col": [11, 47], "just": 38, "kb": 68, "keep": [0, 47, 63], "kei": [46, 55, 58], "keyword": [28, 29, 30, 31, 34, 37, 38, 61, 63], "kwarg": [53, 54], "lab": [15, 63, 65], "lab_nam": [23, 35, 46, 51], "lab_name_agg": 46, "lab_name_bool": 35, "lab_op": 65, "label": [19, 20, 21, 22, 44, 46, 50, 60, 66, 67], "labev": [0, 13, 15, 66], "labnam": 64, "lambda": 24, "larg": 54, "last": 1, "later": 63, "least": 1, "left": 47, "len": [64, 65, 66, 67, 68], "less": [34, 63], "levofloxacin": 68, "like": [3, 17, 35], "limit": [0, 11, 54, 63, 66, 67, 68], "line": 24, "link": 1, "list": [3, 5, 7, 9, 11, 13, 15, 17, 19, 20, 21, 22, 24, 25, 31, 32, 33, 38, 40, 41, 42, 43, 45, 46, 47, 48, 51, 52, 56, 57, 58, 60, 64, 65, 66, 67, 68], "list_column": [0, 5, 7, 9, 13, 15, 17], "list_custom_t": [0, 5, 7, 9, 13, 15, 17, 66], "list_schema": [0, 5, 7, 9, 13, 15, 17, 67, 68], "list_tabl": [0, 3, 5, 7, 9, 13, 15, 17, 64, 65, 68], "liter": [0, 11], "load": 68, "local": 3, "localhost": [3, 17, 64, 66, 67, 68], "locality_vari": 65, "locat": 68, "long": [24, 63], "long_titl": [66, 67], "lookup_cci": 65, "lookup_ccsr": 65, "lookup_diagnosi": 65, "lookup_er_administr": 65, "lookup_hospital_num": 65, "lookup_icd10_ca_descript": 65, "lookup_icd10_ca_to_ccsr": 65, "lookup_imag": 65, "lookup_ip_administr": 65, "lookup_ip_scu": 65, "lookup_lab_concept": 65, "lookup_pharmacy_concept": 65, "lookup_pharmacy_rout": 65, "lookup_phy_characterist": 65, "lookup_room_transf": 65, "lookup_statcan": 65, "lookup_transf": 65, "lookup_transfusion_concept": 65, "lookup_vitals_concept": 65, "lymphadenopathi": 63, "m": [3, 66], "mai": 63, "make": [3, 38], "male": 63, "manag": 5, "mani": [3, 63], "map": [5, 7, 9, 13, 15, 17, 55], "map_concept_ids_to_nam": [0, 17, 68], "march": 63, "match": [3, 36, 68], "measur": [0, 17, 63], "measurement_concept_nam": 68, "medic": 63, "meropenem": 68, "metadata": 68, "method": [5, 7, 9, 11, 13, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 66], "microlab": 64, "million": 11, "mimic": [2, 12, 13, 14, 15, 63, 68], "mimic_fhir": 67, "mimiciii": [0, 66, 68], "mimiciiiqueri": [0, 63, 68], "mimiciv": [0, 67], "mimiciv_": 67, "mimiciv_deriv": 67, "mimiciv_hosp": 67, "mimiciv_icu": 67, "mimiciv_not": 67, "mimicivqueri": [0, 63], "mm": [26, 27], "mode": 11, "model": 68, "modul": [6, 8, 12, 14, 15], "month": [32, 44], "more": 3, "mortal": 63, "most": 63, "motor": 68, "multipl": [9, 23, 24, 46, 51], "must": [25, 31, 32, 33, 38, 46], "mypi": 1, "mysql": 5, "name": [5, 7, 9, 13, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 45, 46, 47, 51, 55, 56, 57, 59, 68], "nbsphinx_allow_error": 3, "need": [1, 59], "neg": [19, 20], "negat": [26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38], "neither": 47, "new": [19, 20, 21, 22, 24, 45, 46, 50, 56, 59, 60], "new_col": 24, "new_col_label": [19, 20, 21, 22, 59, 60], "new_col_nam": [45, 59], "next": 67, "nitrofurantoin": 68, "none": [5, 7, 9, 11, 13, 15, 17, 19, 20, 21, 22, 24, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 45, 46, 47, 52, 59, 60], "noqa": 24, "nor": 47, "not_": [26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38], "note": [5, 15, 64, 68], "note_nlp": 68, "notebook": [64, 65, 66, 67, 68], "null": [43, 45], "number": [5, 39, 49, 57, 63], "numer": 22, "numpi": 1, "nurseassess": 64, "nursecar": 64, "nursechart": 64, "object": [5, 9, 10, 11, 13, 15, 17, 20, 21, 24, 26, 27, 46, 53, 58, 63], "observ": [0, 17, 68], "observation_period": 68, "occur": 63, "omop": [0, 2, 63], "omopqueri": [0, 63], "on_to_typ": [11, 47], "onc": 1, "one": [38, 63], "onli": [38, 47, 48, 63], "op": [0, 3, 11, 15, 63, 64, 65, 66, 68], "op_": 58, "oper": [3, 11, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61], "oppos": 47, "option": [5, 7, 9, 11, 13, 15, 17, 19, 20, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 46, 47, 61], "order": [3, 11, 52, 54, 56, 57], "orderbi": [0, 65], "ordereddict": 58, "origin": 11, "orm": [5, 11, 63, 64, 65, 66, 67, 68], "other": [11, 19, 57, 58], "otherwis": [19, 20, 21, 22, 60], "our": 1, "out": 1, "outcom": 63, "outer": [11, 47], "over": 46, "pai": 19, "pair": 46, "panda": [3, 11, 68], "paramet": [5, 7, 9, 11, 13, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 57, 58, 59, 60, 61, 64, 66, 67, 68], "parenter": 68, "parquet": 11, "partit": [11, 63], "pass": [64, 66, 67, 68], "password": [3, 5, 7, 9, 13, 15, 17, 64, 65, 66, 67, 68], "pasthistori": 64, "path": [3, 5, 11], "patient": [0, 9, 15, 63], "patient_admiss": [66, 67], "patient_admissions_df": 67, "patient_admissions_diagnos": [66, 67], "patient_admissions_lab": 67, "patient_admissions_radiology_not": 67, "patient_admissions_vit": 67, "patient_chart_ev": 66, "patient_diagnos": 64, "patient_id_hash": 63, "patient_lab": [64, 66], "patient_med": 64, "patientunitstayid": 64, "pattern": 35, "payer_plan_period": 68, "pd": 68, "per": 63, "perform": [3, 11, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 57, 59, 60, 61, 68], "person": [0, 17, 68], "person_id": [39, 40, 46, 68], "person_visit": 68, "person_visits_condit": 68, "person_visits_conditions_measur": 68, "pharmaci": 65, "physicalexam": 64, "pip": 2, "piperacillin": 68, "place": 63, "pleas": 1, "poetri": 2, "pop": [0, 58], "port": [3, 5, 7, 9, 13, 15, 17, 64, 66, 67, 68], "possibli": [5, 7, 9, 13, 15, 17], "postgr": [64, 66, 67, 68], "postgresql": [2, 5, 17, 63, 64, 66, 67, 68], "potassium": 63, "pr": 1, "pre": 2, "prevent": 46, "print": [64, 65, 66, 67, 68], "procedur": 15, "procedure_occurr": 68, "procedures_icd": [0, 15], "process": [5, 7, 9, 11, 13, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 57, 59, 60, 61], "product": [47, 68], "profil": [64, 65, 66, 67, 68], "properti": 11, "provid": [5, 7, 9, 13, 15, 17, 24, 38, 45, 46, 52, 62, 68], "public": [65, 67, 68], "pwd": [5, 64, 66, 67, 68], "pyarrow": [11, 68], "pylint": 24, "python": [1, 3, 63], "python3": 3, "qo": [3, 64, 65, 66, 67, 68], "queri": [2, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 23, 49, 51, 53, 58, 62, 63, 64, 65, 66, 67, 68], "querier": [3, 4, 7, 9, 13, 15, 17, 64, 65, 66, 67, 68], "queryinterfac": [0, 9, 13, 15, 17], "queryop": [0, 11, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 57, 58, 59, 60, 61], "quick": [64, 66, 67, 68], "quit": 54, "r": 67, "radiologi": [63, 65], "radiology_not": 67, "radiology_notes_op": 67, "random": 54, "randomizeord": 0, "rate": 68, "rather": [19, 20], "raw": 63, "readi": [64, 65, 66, 67, 68], "receiv": 15, "recent": 63, "recogn": [5, 7, 9, 13, 15, 17], "recommend": 1, "record": [3, 63], "refer": 2, "regex": 36, "regular": 36, "relat": 3, "relationship": 68, "releas": 68, "remov": [42, 43], "renam": 0, "rename_map": 55, "reorder": [0, 57], "reorderaft": 0, "repo": 68, "report": [9, 63], "repres": 47, "respiratori": 68, "respiratorycar": 64, "respiratorychart": 64, "result": [11, 58, 64, 66, 67, 68], "return": [5, 7, 9, 11, 13, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 63, 64, 65, 66, 68], "return_cond": [23, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 51], "room": 9, "room_transf": [0, 9], "roomtransf": 65, "routin": 63, "row": [11, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 42, 43, 49, 52, 54, 63, 65, 66, 67, 68], "ruff": 1, "run": [0, 1, 3, 5, 11, 63, 64, 65, 66, 68], "run_queri": [64, 65, 66, 67, 68], "sai": 47, "same": [46, 47], "save": [0, 11], "schema": [3, 5, 7, 9, 13, 15, 17, 67, 68], "schema_nam": [5, 7, 9, 13, 15, 17, 68], "schizophrenia": 63, "score": 68, "search": 63, "see": 3, "seen": 54, "select": [5, 7, 9, 11, 13, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 57, 58, 59, 60, 61, 67], "self": 5, "separ": 46, "sepsi": 63, "sequenc": [46, 58], "sequenti": [0, 3, 11, 64, 65, 66, 67, 68], "server": 11, "set": [3, 11, 63], "setup": [1, 64, 65, 66, 67, 68], "should": 11, "show": [1, 64, 65, 66, 67, 68], "showcas": 68, "sign": 63, "simpl": 3, "singl": 24, "size": 11, "slice": 58, "slow": 54, "so": 54, "sodium": 63, "sodium_test": 65, "some": [3, 19, 20, 21, 22, 26, 27, 28, 29, 30, 34, 37, 41, 42, 43, 52, 55, 60], "somecol_concept_id": 17, "somecol_concept_nam": 17, "somet": 3, "sort": [52, 63], "sort_index": 68, "sourc": [3, 5, 7, 9, 11, 13, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61], "source_to_concept_map": 68, "source_to_source_vocab_map": 68, "source_to_standard_vocab_map": 68, "specif": 3, "specifi": [17, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 42, 43, 46, 47, 48, 57, 60], "specimen": 68, "sphinx": 3, "sphinxopt": 3, "sql": [3, 5, 7, 9, 11, 13, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 57, 59, 60, 61, 63], "sqlalchemi": [3, 5, 7, 9, 13, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 57, 59, 60, 61, 63], "sqlite": 5, "src_col": 17, "src_tabl": 17, "standard": [5, 7, 9, 13, 15, 17], "start": [2, 37, 59], "start_index": 59, "static": 1, "stop": 59, "stop_index": 59, "str": [5, 7, 9, 11, 13, 15, 17, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 50, 52, 55, 56, 57, 58, 59, 60, 67], "string": [28, 37, 46, 47, 50, 59, 60, 63], "string_agg": 46, "string_aggfunc": 46, "style": [1, 47], "subclass": 5, "subject_id": [63, 66], "submit": 1, "subqueri": [5, 7, 9, 11, 13, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61], "subset": 63, "substr": [0, 3, 38, 63], "subtract": [19, 20], "successfulli": [64, 65, 66, 67, 68], "suggest": 47, "sulbactam": 68, "sulfamethoxazol": 68, "suppli": 15, "support": [6, 12, 14, 25], "sure": 3, "suscept": 68, "synthea": 68, "synthea_integration_test": 68, "system": 5, "t": 1, "tabl": [3, 5, 7, 9, 11, 13, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 57, 58, 59, 60, 61, 63, 64, 66, 68], "table1": [47, 61], "table2": [47, 61], "table_col": [11, 47], "table_nam": [5, 7, 9, 13, 15, 17], "take": [24, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 63], "tazobactam": 68, "teach": 63, "teachingstatu": 64, "templat": 1, "test": [3, 63], "test_type_map": 65, "text": 67, "than": [19, 20, 30, 34, 63], "thank": 1, "them": 11, "thi": [5, 22, 38, 46, 47, 64, 65, 66, 67, 68], "thu": 11, "time": 44, "timedelta": 21, "timestamp": [5, 7, 9, 13, 15, 17, 25, 26, 27, 32, 33, 44, 65], "timestamp_col": [26, 27, 32, 33, 44], "titl": 63, "to_datetim": 68, "tobramycin": 68, "togeth": 63, "too": 24, "tool": [1, 3, 63, 64, 65, 66, 67, 68], "total": 63, "transfer": 9, "transfus": 65, "treatment": 64, "trim": 0, "trimethoprim": 68, "true": [3, 5, 7, 9, 11, 13, 15, 17, 19, 20, 35, 38, 52, 55, 61, 64, 65, 67, 68], "tupl": [11, 47], "tutori": 2, "two": [47, 58, 61], "type": [1, 5, 7, 9, 11, 13, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61], "type_": 25, "union": [0, 5, 11, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 57, 58, 59, 60], "union_al": [0, 11, 61], "union_t": 61, "unit": [3, 9, 68], "up": 3, "updat": [64, 66, 67, 68], "upstream": 11, "urin": 68, "us": [1, 2, 5, 7, 9, 11, 13, 15, 17, 20, 23, 40, 46, 47, 51, 54, 61, 63, 64, 65, 66, 68], "usenam": 3, "user": [3, 5, 7, 9, 13, 15, 17, 64, 65, 66, 67, 68], "usernam": [5, 64, 65, 66, 67, 68], "util": [64, 65, 66, 67, 68], "v1": [66, 68], "v2": [67, 68], "valu": [22, 29, 30, 31, 34, 42, 43, 45, 46, 47, 50], "value_count": 68, "valuenum": 63, "virtual": 1, "visit": 63, "visit_count": 46, "visit_detail": [0, 17, 68], "visit_id": 40, "visit_occurr": [0, 17, 68], "visit_occurrence_id": 68, "visit_start_d": 68, "visits_concept_map": 68, "visits_concept_mapped_di": 68, "visits_measur": 68, "vital": [63, 65], "vitalaperiod": 64, "vitalperiod": 64, "vocabulari": 68, "we": [1, 68], "welcom": 3, "were": 63, "when": [5, 38, 47, 54], "where": [11, 59], "wherea": 19, "whether": [5, 7, 9, 11, 13, 15, 17, 38, 52, 55, 61], "which": [1, 5, 11, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 54, 55, 56, 57, 59, 60, 61, 68], "whitespac": 60, "who": 63, "work": 19, "wrap": [9, 10, 11, 13, 15, 17], "wrapper": [3, 63], "write": 3, "x": 24, "y": 24, "year": [15, 32, 33, 44, 63, 68], "you": [1, 63], "your": 1, "yyyi": [26, 27]}, "titles": ["API Reference", "Contributing to cycquery", "Welcome to cycquery\u2019s documentation!", "cycquery", "cycquery.base", "cycquery.base.DatasetQuerier", "cycquery.eicu", "cycquery.eicu.EICUQuerier", "cycquery.gemini", "cycquery.gemini.GEMINIQuerier", "cycquery.interface", "cycquery.interface.QueryInterface", "cycquery.mimiciii", "cycquery.mimiciii.MIMICIIIQuerier", "cycquery.mimiciv", "cycquery.mimiciv.MIMICIVQuerier", "cycquery.omop", "cycquery.omop.OMOPQuerier", "cycquery.ops", "cycquery.ops.AddColumn", "cycquery.ops.AddDeltaColumn", "cycquery.ops.AddDeltaConstant", "cycquery.ops.AddNumeric", "cycquery.ops.And", "cycquery.ops.Apply", "cycquery.ops.Cast", "cycquery.ops.ConditionAfterDate", "cycquery.ops.ConditionBeforeDate", "cycquery.ops.ConditionEndsWith", "cycquery.ops.ConditionEquals", "cycquery.ops.ConditionGreaterThan", "cycquery.ops.ConditionIn", "cycquery.ops.ConditionInMonths", "cycquery.ops.ConditionInYears", "cycquery.ops.ConditionLessThan", "cycquery.ops.ConditionLike", "cycquery.ops.ConditionRegexMatch", "cycquery.ops.ConditionStartsWith", "cycquery.ops.ConditionSubstring", "cycquery.ops.Count", "cycquery.ops.Distinct", "cycquery.ops.Drop", "cycquery.ops.DropEmpty", "cycquery.ops.DropNulls", "cycquery.ops.ExtractTimestampComponent", "cycquery.ops.FillNull", "cycquery.ops.GroupByAggregate", "cycquery.ops.Join", "cycquery.ops.Keep", "cycquery.ops.Limit", "cycquery.ops.Literal", "cycquery.ops.Or", "cycquery.ops.OrderBy", "cycquery.ops.QueryOp", "cycquery.ops.RandomizeOrder", "cycquery.ops.Rename", "cycquery.ops.Reorder", "cycquery.ops.ReorderAfter", "cycquery.ops.Sequential", "cycquery.ops.Substring", "cycquery.ops.Trim", "cycquery.ops.Union", "cycquery", "Tutorials", "eICU-CRD tutorial", "GEMINI tutorial", "MIMIC-III tutorial", "MIMIC-IV tutorial", "OMOP tutorial"], "titleterms": {"": 2, "1": [64, 65, 66, 67, 68], "10": 67, "100": 64, "101": 65, "1a": 65, "1b": 65, "1c": 65, "2": [64, 66, 67, 68], "20": 66, "2009": 67, "2010": 68, "2014": 64, "2015": [64, 65, 67], "2016": 65, "2020": 68, "2021": 67, "2a": 65, "3": [64, 66, 67], "31": 65, "4": [64, 66, 67], "5": 67, "6": 67, "7": 67, "8": 67, "9": [66, 67], "And": 23, "Or": 51, "aado2": 66, "abov": 65, "addcolumn": 19, "adddeltacolumn": 20, "adddeltaconst": 21, "addnumer": 22, "admiss": [65, 67], "advanc": 67, "after": 68, "all": [64, 66, 67, 68], "api": [0, 62], "appli": 24, "approx": 67, "apr": 65, "april": 65, "base": [4, 5], "batch": 67, "between": 65, "carevu": 66, "cast": 25, "chart": 66, "chronic": 67, "code": 1, "commit": 1, "conditionafterd": 26, "conditionbefored": 27, "conditionendswith": 28, "conditionequ": 29, "conditiongreaterthan": 30, "conditionin": 31, "conditioninmonth": 32, "conditioninyear": 33, "conditionlessthan": 34, "conditionlik": 35, "conditionregexmatch": [36, 67], "conditionstartswith": 37, "conditionsubstr": 38, "contain": 67, "content": 2, "contribut": [1, 3], "count": 39, "crd": 64, "creat": 65, "cycqueri": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 67], "databas": 3, "dataset": [62, 65], "datasetqueri": 5, "develop": 3, "diagnos": [64, 66, 67, 68], "diagnosisstr": 64, "discharg": [64, 65], "discharge_date_tim": 65, "distinct": 40, "document": [2, 3], "drop": 41, "dropempti": 42, "dropnul": 43, "each": 65, "eicu": [6, 7, 64], "eicuqueri": [7, 64], "encount": [64, 65, 66, 67], "end": 68, "event": 66, "exampl": [64, 65, 66, 67, 68], "extracttimestampcompon": 44, "femal": [64, 66, 67, 68], "fillnul": 45, "filter": 67, "from": [65, 67], "gastroenter": 66, "gemini": [8, 9, 65], "geminiqueri": [9, 65], "get": [3, 64, 65, 66, 67, 68], "glucos": 64, "groupbyaggreg": 46, "guidelin": 1, "have": 66, "hemoglobin": 67, "hook": 1, "hospit": [64, 65], "how": 65, "icd": [66, 67], "iii": 66, "import": [64, 65, 66, 67, 68], "index": 67, "infecti": 67, "instal": 3, "instanti": [64, 65, 66, 67, 68], "interfac": [10, 11], "iv": 67, "join": 47, "keep": [48, 65], "keyword": 67, "lab": [64, 66, 67], "later": 67, "less": 66, "limit": [49, 64], "liter": 50, "long": [66, 67], "lymphadenopathi": 67, "mai": 65, "male": 66, "mani": 65, "march": 65, "measur": 68, "medic": 64, "mimic": [66, 67], "mimiciii": [12, 13], "mimiciiiqueri": [13, 66], "mimiciv": [14, 15], "mimicivqueri": [15, 67], "mortal": [66, 68], "most": 65, "number": 65, "occur": 67, "omop": [16, 17, 68], "omopqueri": [17, 68], "one": 65, "onli": 65, "op": [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 67], "orderbi": 52, "outcom": [66, 68], "partit": 67, "patient": [64, 65, 66, 67, 68], "patient_id_hash": 65, "per": 65, "pip": 3, "place": 65, "poetri": 3, "postgresql": 3, "potassium": [64, 66], "pre": 1, "queri": 3, "queryinterfac": 11, "queryop": 53, "radiologi": 67, "randomizeord": 54, "raw": 67, "recent": 65, "record": 65, "refer": 0, "renam": 55, "reorder": 56, "reorderaft": 57, "report": 67, "return": 67, "routin": 67, "row": 64, "run": 67, "schizophrenia": [64, 67], "search": 64, "sepsi": 68, "sequenti": 58, "set": 65, "sign": 67, "sodium": 65, "sort": 65, "sql": 67, "start": 3, "string": 67, "subject_id": 67, "subset": 65, "substr": [59, 64], "tabl": 65, "take": 65, "teach": 64, "test": [64, 65, 66, 67], "than": 66, "titl": [66, 67], "togeth": 67, "total": 65, "trim": 60, "tutori": [63, 64, 65, 66, 67, 68], "union": 61, "us": [3, 67], "valuenum": 66, "visit": 68, "vital": 67, "welcom": 2, "were": 65, "who": 65, "year": [64, 67]}})
\ No newline at end of file
diff --git a/tutorials/eicu.html b/tutorials/eicu.html
index 7a475eb..a0fdbb9 100644
--- a/tutorials/eicu.html
+++ b/tutorials/eicu.html
@@ -615,7 +615,7 @@ <h2>Imports and instantiate <code class="docutils literal notranslate"><span cla
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:05:00,713 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Database setup, ready to run queries!
+2024-10-11 10:03:37,592 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Database setup, ready to run queries!
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -679,7 +679,7 @@ <h2>Example 1. Get all female patients discharged in 2014 (limit to 100 rows).<a
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:05:02,203 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2024-10-11 10:03:38,579 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
 </pre></div></div>
 </div>
 <div class="nboutput docutils container">
@@ -687,7 +687,7 @@ <h2>Example 1. Get all female patients discharged in 2014 (limit to 100 rows).<a
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:05:02,205 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.651641 s
+2024-10-11 10:03:38,581 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.170236 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -722,7 +722,7 @@ <h2>Example 2. Get all patient encounters with diagnoses (<code class="docutils
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:05:03,620 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2024-10-11 10:03:39,534 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
 </pre></div></div>
 </div>
 <div class="nboutput docutils container">
@@ -730,7 +730,7 @@ <h2>Example 2. Get all patient encounters with diagnoses (<code class="docutils
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:05:03,622 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 1.385223 s
+2024-10-11 10:03:39,536 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.923233 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -771,7 +771,7 @@ <h2>Example 3. Get potassium lab tests for patients discharged in the year 2014,
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:05:04,041 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2024-10-11 10:03:40,069 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
 </pre></div></div>
 </div>
 <div class="nboutput docutils container">
@@ -779,7 +779,7 @@ <h2>Example 3. Get potassium lab tests for patients discharged in the year 2014,
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:05:04,047 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.382669 s
+2024-10-11 10:03:40,071 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.486850 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -818,7 +818,7 @@ <h2>Example 4. Get glucose medications (substring search) for female patients di
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:05:11,900 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2024-10-11 10:03:44,141 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
 </pre></div></div>
 </div>
 <div class="nboutput docutils container">
@@ -826,7 +826,7 @@ <h2>Example 4. Get glucose medications (substring search) for female patients di
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:05:11,902 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 7.801912 s
+2024-10-11 10:03:44,143 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 4.032112 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
diff --git a/tutorials/eicu.ipynb b/tutorials/eicu.ipynb
index e56ff61..c56c391 100644
--- a/tutorials/eicu.ipynb
+++ b/tutorials/eicu.ipynb
@@ -35,10 +35,10 @@
    "id": "75a140e0-fb27-4319-862f-be54397abe5c",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-10-01T20:04:57.743899Z",
-     "iopub.status.busy": "2024-10-01T20:04:57.742789Z",
-     "iopub.status.idle": "2024-10-01T20:05:01.531124Z",
-     "shell.execute_reply": "2024-10-01T20:05:01.529088Z"
+     "iopub.execute_input": "2024-10-11T14:03:35.111332Z",
+     "iopub.status.busy": "2024-10-11T14:03:35.110110Z",
+     "iopub.status.idle": "2024-10-11T14:03:38.390373Z",
+     "shell.execute_reply": "2024-10-11T14:03:38.388596Z"
     },
     "tags": []
    },
@@ -47,7 +47,7 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:05:00,713 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Database setup, ready to run queries!\n"
+      "2024-10-11 10:03:37,592 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Database setup, ready to run queries!\n"
      ]
     },
     {
@@ -124,10 +124,10 @@
    "id": "c1efa964-8978-4a0e-9892-5ea4ce9953a3",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-10-01T20:05:01.540127Z",
-     "iopub.status.busy": "2024-10-01T20:05:01.538235Z",
-     "iopub.status.idle": "2024-10-01T20:05:02.214346Z",
-     "shell.execute_reply": "2024-10-01T20:05:02.212279Z"
+     "iopub.execute_input": "2024-10-11T14:03:38.397772Z",
+     "iopub.status.busy": "2024-10-11T14:03:38.396948Z",
+     "iopub.status.idle": "2024-10-11T14:03:38.588580Z",
+     "shell.execute_reply": "2024-10-11T14:03:38.586813Z"
     },
     "tags": []
    },
@@ -136,14 +136,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:05:02,203 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2024-10-11 10:03:38,579 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:05:02,205 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.651641 s\n"
+      "2024-10-11 10:03:38,581 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.170236 s\n"
      ]
     },
     {
@@ -180,10 +180,10 @@
    "id": "a7ab5fa3-e26b-47a7-818f-1bf367a55760",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-10-01T20:05:02.222547Z",
-     "iopub.status.busy": "2024-10-01T20:05:02.221864Z",
-     "iopub.status.idle": "2024-10-01T20:05:03.631297Z",
-     "shell.execute_reply": "2024-10-01T20:05:03.627986Z"
+     "iopub.execute_input": "2024-10-11T14:03:38.596396Z",
+     "iopub.status.busy": "2024-10-11T14:03:38.594869Z",
+     "iopub.status.idle": "2024-10-11T14:03:39.543370Z",
+     "shell.execute_reply": "2024-10-11T14:03:39.541602Z"
     },
     "tags": []
    },
@@ -192,14 +192,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:05:03,620 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2024-10-11 10:03:39,534 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:05:03,622 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 1.385223 s\n"
+      "2024-10-11 10:03:39,536 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.923233 s\n"
      ]
     },
     {
@@ -236,10 +236,10 @@
    "id": "24043abc-1878-4e00-8229-36d4a0368b98",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-10-01T20:05:03.639215Z",
-     "iopub.status.busy": "2024-10-01T20:05:03.638412Z",
-     "iopub.status.idle": "2024-10-01T20:05:04.070202Z",
-     "shell.execute_reply": "2024-10-01T20:05:04.068472Z"
+     "iopub.execute_input": "2024-10-11T14:03:39.551008Z",
+     "iopub.status.busy": "2024-10-11T14:03:39.549980Z",
+     "iopub.status.idle": "2024-10-11T14:03:40.079404Z",
+     "shell.execute_reply": "2024-10-11T14:03:40.077526Z"
     },
     "tags": []
    },
@@ -248,14 +248,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:05:04,041 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2024-10-11 10:03:40,069 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:05:04,047 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.382669 s\n"
+      "2024-10-11 10:03:40,071 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.486850 s\n"
      ]
     },
     {
@@ -298,10 +298,10 @@
    "id": "f6142f27-e8d1-453c-bfe2-2265d9ff1914",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-10-01T20:05:04.078243Z",
-     "iopub.status.busy": "2024-10-01T20:05:04.077111Z",
-     "iopub.status.idle": "2024-10-01T20:05:11.911457Z",
-     "shell.execute_reply": "2024-10-01T20:05:11.909768Z"
+     "iopub.execute_input": "2024-10-11T14:03:40.087395Z",
+     "iopub.status.busy": "2024-10-11T14:03:40.085936Z",
+     "iopub.status.idle": "2024-10-11T14:03:44.149996Z",
+     "shell.execute_reply": "2024-10-11T14:03:44.148201Z"
     },
     "tags": []
    },
@@ -310,14 +310,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:05:11,900 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2024-10-11 10:03:44,141 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:05:11,902 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 7.801912 s\n"
+      "2024-10-11 10:03:44,143 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 4.032112 s\n"
      ]
     },
     {
diff --git a/tutorials/mimiciii.html b/tutorials/mimiciii.html
index 9bcd72f..57f5d48 100644
--- a/tutorials/mimiciii.html
+++ b/tutorials/mimiciii.html
@@ -615,7 +615,7 @@ <h2>Imports and instantiate <code class="docutils literal notranslate"><span cla
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:05:28,856 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Database setup, ready to run queries!
+2024-10-11 10:04:00,312 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Database setup, ready to run queries!
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -649,7 +649,7 @@ <h2>Example 1. Get all male patients with a mortality outcome.<a class="headerli
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:05:36,267 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2024-10-11 10:04:06,957 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
 </pre></div></div>
 </div>
 <div class="nboutput docutils container">
@@ -657,7 +657,7 @@ <h2>Example 1. Get all male patients with a mortality outcome.<a class="headerli
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:05:36,269 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.319342 s
+2024-10-11 10:04:06,959 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.204972 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -697,7 +697,7 @@ <h2>Example 2. Get all female patient encounters with diagnoses (<code class="do
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:05:39,635 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2024-10-11 10:04:08,672 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
 </pre></div></div>
 </div>
 <div class="nboutput docutils container">
@@ -705,7 +705,7 @@ <h2>Example 2. Get all female patient encounters with diagnoses (<code class="do
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:05:39,637 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 3.320573 s
+2024-10-11 10:04:08,673 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 1.662382 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -737,7 +737,7 @@ <h2>Example 3. Get potassium lab tests for female patients.<a class="headerlink"
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:05:39,925 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2024-10-11 10:04:08,968 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
 </pre></div></div>
 </div>
 <div class="nboutput docutils container">
@@ -745,7 +745,7 @@ <h2>Example 3. Get potassium lab tests for female patients.<a class="headerlink"
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:05:39,927 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.243667 s
+2024-10-11 10:04:08,969 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.247393 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -782,7 +782,7 @@ <h2>Example 4. Get AaDO2 carevue chart events for male patients that have a <cod
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:22:36,593 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2024-10-11 10:17:37,144 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
 </pre></div></div>
 </div>
 <div class="nboutput docutils container">
@@ -790,7 +790,7 @@ <h2>Example 4. Get AaDO2 carevue chart events for male patients that have a <cod
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:22:36,647 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 1016.653061 s
+2024-10-11 10:17:37,193 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 808.157255 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
diff --git a/tutorials/mimiciii.ipynb b/tutorials/mimiciii.ipynb
index f569b4b..9de6f37 100644
--- a/tutorials/mimiciii.ipynb
+++ b/tutorials/mimiciii.ipynb
@@ -35,10 +35,10 @@
    "id": "75a140e0-fb27-4319-862f-be54397abe5c",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-10-01T20:05:19.669639Z",
-     "iopub.status.busy": "2024-10-01T20:05:19.668557Z",
-     "iopub.status.idle": "2024-10-01T20:05:35.932568Z",
-     "shell.execute_reply": "2024-10-01T20:05:35.927746Z"
+     "iopub.execute_input": "2024-10-11T14:03:52.359854Z",
+     "iopub.status.busy": "2024-10-11T14:03:52.358662Z",
+     "iopub.status.idle": "2024-10-11T14:04:06.737597Z",
+     "shell.execute_reply": "2024-10-11T14:04:06.735693Z"
     },
     "tags": []
    },
@@ -47,7 +47,7 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:05:28,856 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Database setup, ready to run queries!\n"
+      "2024-10-11 10:04:00,312 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Database setup, ready to run queries!\n"
      ]
     },
     {
@@ -94,10 +94,10 @@
    "id": "c1efa964-8978-4a0e-9892-5ea4ce9953a3",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-10-01T20:05:35.941533Z",
-     "iopub.status.busy": "2024-10-01T20:05:35.940082Z",
-     "iopub.status.idle": "2024-10-01T20:05:36.276772Z",
-     "shell.execute_reply": "2024-10-01T20:05:36.274981Z"
+     "iopub.execute_input": "2024-10-11T14:04:06.745311Z",
+     "iopub.status.busy": "2024-10-11T14:04:06.744461Z",
+     "iopub.status.idle": "2024-10-11T14:04:06.966818Z",
+     "shell.execute_reply": "2024-10-11T14:04:06.965099Z"
     },
     "tags": []
    },
@@ -106,14 +106,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:05:36,267 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2024-10-11 10:04:06,957 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:05:36,269 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.319342 s\n"
+      "2024-10-11 10:04:06,959 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.204972 s\n"
      ]
     },
     {
@@ -150,10 +150,10 @@
    "id": "a7ab5fa3-e26b-47a7-818f-1bf367a55760",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-10-01T20:05:36.284969Z",
-     "iopub.status.busy": "2024-10-01T20:05:36.283406Z",
-     "iopub.status.idle": "2024-10-01T20:05:39.644662Z",
-     "shell.execute_reply": "2024-10-01T20:05:39.642828Z"
+     "iopub.execute_input": "2024-10-11T14:04:06.974489Z",
+     "iopub.status.busy": "2024-10-11T14:04:06.973474Z",
+     "iopub.status.idle": "2024-10-11T14:04:08.681313Z",
+     "shell.execute_reply": "2024-10-11T14:04:08.679550Z"
     },
     "tags": []
    },
@@ -162,14 +162,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:05:39,635 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2024-10-11 10:04:08,672 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:05:39,637 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 3.320573 s\n"
+      "2024-10-11 10:04:08,673 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 1.662382 s\n"
      ]
     },
     {
@@ -211,10 +211,10 @@
    "id": "24043abc-1878-4e00-8229-36d4a0368b98",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-10-01T20:05:39.651302Z",
-     "iopub.status.busy": "2024-10-01T20:05:39.650261Z",
-     "iopub.status.idle": "2024-10-01T20:05:39.934356Z",
-     "shell.execute_reply": "2024-10-01T20:05:39.932646Z"
+     "iopub.execute_input": "2024-10-11T14:04:08.688878Z",
+     "iopub.status.busy": "2024-10-11T14:04:08.687529Z",
+     "iopub.status.idle": "2024-10-11T14:04:08.977298Z",
+     "shell.execute_reply": "2024-10-11T14:04:08.975468Z"
     },
     "tags": []
    },
@@ -223,14 +223,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:05:39,925 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2024-10-11 10:04:08,968 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:05:39,927 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.243667 s\n"
+      "2024-10-11 10:04:08,969 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.247393 s\n"
      ]
     },
     {
@@ -264,10 +264,10 @@
    "id": "f6142f27-e8d1-453c-bfe2-2265d9ff1914",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-10-01T20:05:39.941194Z",
-     "iopub.status.busy": "2024-10-01T20:05:39.940551Z",
-     "iopub.status.idle": "2024-10-01T20:22:36.680196Z",
-     "shell.execute_reply": "2024-10-01T20:22:36.678370Z"
+     "iopub.execute_input": "2024-10-11T14:04:08.984896Z",
+     "iopub.status.busy": "2024-10-11T14:04:08.983925Z",
+     "iopub.status.idle": "2024-10-11T14:17:37.202045Z",
+     "shell.execute_reply": "2024-10-11T14:17:37.200034Z"
     },
     "tags": []
    },
@@ -276,14 +276,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:22:36,593 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2024-10-11 10:17:37,144 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:22:36,647 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 1016.653061 s\n"
+      "2024-10-11 10:17:37,193 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 808.157255 s\n"
      ]
     },
     {
diff --git a/tutorials/mimiciv.html b/tutorials/mimiciv.html
index a3e874f..250b0bb 100644
--- a/tutorials/mimiciv.html
+++ b/tutorials/mimiciv.html
@@ -615,7 +615,7 @@ <h2>Imports and instantiate <code class="docutils literal notranslate"><span cla
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:23:08,887 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Database setup, ready to run queries!
+2024-10-11 10:18:01,492 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Database setup, ready to run queries!
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -660,7 +660,7 @@ <h2>Example 1. Get all patient admissions from 2021 or later (approx year of adm
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:23:12,788 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2024-10-11 10:18:06,253 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
 </pre></div></div>
 </div>
 <div class="nboutput docutils container">
@@ -668,7 +668,7 @@ <h2>Example 1. Get all patient admissions from 2021 or later (approx year of adm
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:23:12,790 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 1.393220 s
+2024-10-11 10:18:06,255 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 2.310790 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -713,7 +713,7 @@ <h2>Example 2. Get all patient encounters with diagnoses (<code class="docutils
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:23:26,347 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2024-10-11 10:18:21,279 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
 </pre></div></div>
 </div>
 <div class="nboutput docutils container">
@@ -721,7 +721,7 @@ <h2>Example 2. Get all patient encounters with diagnoses (<code class="docutils
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:23:26,349 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 13.475876 s
+2024-10-11 10:18:21,281 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 14.957633 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -766,7 +766,7 @@ <h2>Example 3. Advanced - uses <code class="docutils literal notranslate"><span
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:23:30,077 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2024-10-11 10:18:25,069 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
 </pre></div></div>
 </div>
 <div class="nboutput docutils container">
@@ -774,7 +774,7 @@ <h2>Example 3. Advanced - uses <code class="docutils literal notranslate"><span
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:23:30,079 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 3.661972 s
+2024-10-11 10:18:25,071 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 3.714619 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -815,7 +815,7 @@ <h2>Example 4. Get routine vital signs for patients from year 2015.<a class="hea
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:23:38,082 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2024-10-11 10:18:30,629 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
 </pre></div></div>
 </div>
 <div class="nboutput docutils container">
@@ -823,7 +823,7 @@ <h2>Example 4. Get routine vital signs for patients from year 2015.<a class="hea
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:23:38,083 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 7.940803 s
+2024-10-11 10:18:30,631 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 5.485932 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -864,7 +864,7 @@ <h2>Example 5. Get hemoglobin lab tests for patients from year 2009.<a class="he
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:23:42,275 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2024-10-11 10:18:36,946 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
 </pre></div></div>
 </div>
 <div class="nboutput docutils container">
@@ -872,7 +872,7 @@ <h2>Example 5. Get hemoglobin lab tests for patients from year 2009.<a class="he
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:23:42,277 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 4.119322 s
+2024-10-11 10:18:36,948 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 6.241206 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -919,7 +919,7 @@ <h2>Example 6. Get radiology reports and filter on keywords <code class="docutil
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:25:10,112 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2024-10-11 10:20:08,323 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
 </pre></div></div>
 </div>
 <div class="nboutput docutils container">
@@ -927,7 +927,7 @@ <h2>Example 6. Get radiology reports and filter on keywords <code class="docutil
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:25:10,114 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 87.780566 s
+2024-10-11 10:20:08,325 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 91.312438 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -970,7 +970,7 @@ <h2>Example 7. Get all female patient encounters from year 2015, and return batc
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:25:11,273 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2024-10-11 10:20:09,656 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
 </pre></div></div>
 </div>
 <div class="nboutput docutils container">
@@ -978,7 +978,7 @@ <h2>Example 7. Get all female patient encounters from year 2015, and return batc
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:25:11,275 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 1.080360 s
+2024-10-11 10:20:09,658 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 1.229999 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -1006,7 +1006,7 @@ <h2>Example 8. Running a raw SQL string.<a class="headerlink" href="#Example-8.-
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:25:11,749 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2024-10-11 10:20:10,129 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
 </pre></div></div>
 </div>
 <div class="nboutput docutils container">
@@ -1014,7 +1014,7 @@ <h2>Example 8. Running a raw SQL string.<a class="headerlink" href="#Example-8.-
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:25:11,751 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.013766 s
+2024-10-11 10:20:10,131 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.014086 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
diff --git a/tutorials/mimiciv.ipynb b/tutorials/mimiciv.ipynb
index 37e13e0..c0d95b2 100644
--- a/tutorials/mimiciv.ipynb
+++ b/tutorials/mimiciv.ipynb
@@ -35,10 +35,10 @@
    "id": "53009e6b",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-10-01T20:22:54.702463Z",
-     "iopub.status.busy": "2024-10-01T20:22:54.701082Z",
-     "iopub.status.idle": "2024-10-01T20:23:11.350828Z",
-     "shell.execute_reply": "2024-10-01T20:23:11.349190Z"
+     "iopub.execute_input": "2024-10-11T14:17:51.685153Z",
+     "iopub.status.busy": "2024-10-11T14:17:51.684514Z",
+     "iopub.status.idle": "2024-10-11T14:18:03.899007Z",
+     "shell.execute_reply": "2024-10-11T14:18:03.897038Z"
     },
     "tags": []
    },
@@ -47,7 +47,7 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:23:08,887 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Database setup, ready to run queries!\n"
+      "2024-10-11 10:18:01,492 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Database setup, ready to run queries!\n"
      ]
     },
     {
@@ -105,10 +105,10 @@
    "id": "cdfadaa4-6fd6-4fd7-85cf-e012aa0799e1",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-10-01T20:23:11.357916Z",
-     "iopub.status.busy": "2024-10-01T20:23:11.356877Z",
-     "iopub.status.idle": "2024-10-01T20:23:12.798571Z",
-     "shell.execute_reply": "2024-10-01T20:23:12.796723Z"
+     "iopub.execute_input": "2024-10-11T14:18:03.907058Z",
+     "iopub.status.busy": "2024-10-11T14:18:03.905425Z",
+     "iopub.status.idle": "2024-10-11T14:18:06.263688Z",
+     "shell.execute_reply": "2024-10-11T14:18:06.261604Z"
     }
    },
    "outputs": [
@@ -116,14 +116,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:23:12,788 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2024-10-11 10:18:06,253 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:23:12,790 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 1.393220 s\n"
+      "2024-10-11 10:18:06,255 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 2.310790 s\n"
      ]
     },
     {
@@ -160,10 +160,10 @@
    "id": "a89a9cf0",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-10-01T20:23:12.805853Z",
-     "iopub.status.busy": "2024-10-01T20:23:12.804911Z",
-     "iopub.status.idle": "2024-10-01T20:23:26.355994Z",
-     "shell.execute_reply": "2024-10-01T20:23:26.354275Z"
+     "iopub.execute_input": "2024-10-11T14:18:06.271128Z",
+     "iopub.status.busy": "2024-10-11T14:18:06.269719Z",
+     "iopub.status.idle": "2024-10-11T14:18:21.290085Z",
+     "shell.execute_reply": "2024-10-11T14:18:21.288056Z"
     }
    },
    "outputs": [
@@ -171,14 +171,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:23:26,347 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2024-10-11 10:18:21,279 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:23:26,349 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 13.475876 s\n"
+      "2024-10-11 10:18:21,281 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 14.957633 s\n"
      ]
     },
     {
@@ -225,10 +225,10 @@
    "id": "03936cee",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-10-01T20:23:26.363079Z",
-     "iopub.status.busy": "2024-10-01T20:23:26.361705Z",
-     "iopub.status.idle": "2024-10-01T20:23:30.086744Z",
-     "shell.execute_reply": "2024-10-01T20:23:30.085061Z"
+     "iopub.execute_input": "2024-10-11T14:18:21.298853Z",
+     "iopub.status.busy": "2024-10-11T14:18:21.297508Z",
+     "iopub.status.idle": "2024-10-11T14:18:25.080157Z",
+     "shell.execute_reply": "2024-10-11T14:18:25.078296Z"
     }
    },
    "outputs": [
@@ -236,14 +236,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:23:30,077 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2024-10-11 10:18:25,069 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:23:30,079 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 3.661972 s\n"
+      "2024-10-11 10:18:25,071 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 3.714619 s\n"
      ]
     },
     {
@@ -290,10 +290,10 @@
    "id": "56a72377",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-10-01T20:23:30.095455Z",
-     "iopub.status.busy": "2024-10-01T20:23:30.093356Z",
-     "iopub.status.idle": "2024-10-01T20:23:38.091485Z",
-     "shell.execute_reply": "2024-10-01T20:23:38.089713Z"
+     "iopub.execute_input": "2024-10-11T14:18:25.088192Z",
+     "iopub.status.busy": "2024-10-11T14:18:25.086821Z",
+     "iopub.status.idle": "2024-10-11T14:18:30.640389Z",
+     "shell.execute_reply": "2024-10-11T14:18:30.638481Z"
     }
    },
    "outputs": [
@@ -301,14 +301,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:23:38,082 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2024-10-11 10:18:30,629 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:23:38,083 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 7.940803 s\n"
+      "2024-10-11 10:18:30,631 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 5.485932 s\n"
      ]
     },
     {
@@ -351,10 +351,10 @@
    "id": "bce11f81",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-10-01T20:23:38.099045Z",
-     "iopub.status.busy": "2024-10-01T20:23:38.097959Z",
-     "iopub.status.idle": "2024-10-01T20:23:42.284684Z",
-     "shell.execute_reply": "2024-10-01T20:23:42.282925Z"
+     "iopub.execute_input": "2024-10-11T14:18:30.648126Z",
+     "iopub.status.busy": "2024-10-11T14:18:30.647042Z",
+     "iopub.status.idle": "2024-10-11T14:18:36.955682Z",
+     "shell.execute_reply": "2024-10-11T14:18:36.953952Z"
     }
    },
    "outputs": [
@@ -362,14 +362,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:23:42,275 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2024-10-11 10:18:36,946 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:23:42,277 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 4.119322 s\n"
+      "2024-10-11 10:18:36,948 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 6.241206 s\n"
      ]
     },
     {
@@ -412,10 +412,10 @@
    "id": "f00d270c-d78f-4dc0-8dae-ff4d52958c8b",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-10-01T20:23:42.298161Z",
-     "iopub.status.busy": "2024-10-01T20:23:42.296376Z",
-     "iopub.status.idle": "2024-10-01T20:25:10.122048Z",
-     "shell.execute_reply": "2024-10-01T20:25:10.120289Z"
+     "iopub.execute_input": "2024-10-11T14:18:36.963684Z",
+     "iopub.status.busy": "2024-10-11T14:18:36.962224Z",
+     "iopub.status.idle": "2024-10-11T14:20:08.333276Z",
+     "shell.execute_reply": "2024-10-11T14:20:08.331501Z"
     },
     "tags": []
    },
@@ -424,14 +424,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:25:10,112 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2024-10-11 10:20:08,323 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:25:10,114 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 87.780566 s\n"
+      "2024-10-11 10:20:08,325 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 91.312438 s\n"
      ]
     },
     {
@@ -480,10 +480,10 @@
    "id": "28683d70-376e-4d9b-883d-1a7de634e455",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-10-01T20:25:10.129182Z",
-     "iopub.status.busy": "2024-10-01T20:25:10.127822Z",
-     "iopub.status.idle": "2024-10-01T20:25:11.727130Z",
-     "shell.execute_reply": "2024-10-01T20:25:11.725133Z"
+     "iopub.execute_input": "2024-10-11T14:20:08.341166Z",
+     "iopub.status.busy": "2024-10-11T14:20:08.339709Z",
+     "iopub.status.idle": "2024-10-11T14:20:10.107163Z",
+     "shell.execute_reply": "2024-10-11T14:20:10.105260Z"
     }
    },
    "outputs": [
@@ -491,14 +491,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:25:11,273 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2024-10-11 10:20:09,656 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:25:11,275 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 1.080360 s\n"
+      "2024-10-11 10:20:09,658 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 1.229999 s\n"
      ]
     },
     {
@@ -543,10 +543,10 @@
    "id": "a853deec",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-10-01T20:25:11.735377Z",
-     "iopub.status.busy": "2024-10-01T20:25:11.733886Z",
-     "iopub.status.idle": "2024-10-01T20:25:11.758574Z",
-     "shell.execute_reply": "2024-10-01T20:25:11.756917Z"
+     "iopub.execute_input": "2024-10-11T14:20:10.115220Z",
+     "iopub.status.busy": "2024-10-11T14:20:10.114079Z",
+     "iopub.status.idle": "2024-10-11T14:20:10.138383Z",
+     "shell.execute_reply": "2024-10-11T14:20:10.136659Z"
     },
     "tags": []
    },
@@ -555,14 +555,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:25:11,749 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2024-10-11 10:20:10,129 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:25:11,751 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.013766 s\n"
+      "2024-10-11 10:20:10,131 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.014086 s\n"
      ]
     },
     {
diff --git a/tutorials/omop.html b/tutorials/omop.html
index 7be9578..32866a3 100644
--- a/tutorials/omop.html
+++ b/tutorials/omop.html
@@ -623,7 +623,7 @@ <h2>Imports and instantiate <code class="docutils literal notranslate"><span cla
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:25:23,333 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Database setup, ready to run queries!
+2024-10-11 10:20:23,549 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Database setup, ready to run queries!
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -698,7 +698,7 @@ <h2>Example 1. Get all patient visits in or after 2010.<a class="headerlink" hre
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:25:24,977 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2024-10-11 10:20:25,407 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
 </pre></div></div>
 </div>
 <div class="nboutput docutils container">
@@ -706,7 +706,7 @@ <h2>Example 1. Get all patient visits in or after 2010.<a class="headerlink" hre
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:25:24,979 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.320281 s
+2024-10-11 10:20:25,410 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.568863 s
 </pre></div></div>
 </div>
 <div class="nboutput docutils container">
@@ -764,7 +764,7 @@ <h2>Example 2. Get measurements for all visits in or after 2020.<a class="header
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:25:25,911 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2024-10-11 10:20:26,797 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
 </pre></div></div>
 </div>
 <div class="nboutput docutils container">
@@ -772,7 +772,7 @@ <h2>Example 2. Get measurements for all visits in or after 2020.<a class="header
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:25:25,913 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.704169 s
+2024-10-11 10:20:26,799 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.892611 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -818,7 +818,7 @@ <h2>Imports and instantiate <code class="docutils literal notranslate"><span cla
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:25:32,849 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Database setup, ready to run queries!
+2024-10-11 10:20:34,968 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Database setup, ready to run queries!
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -858,7 +858,7 @@ <h2>Example 1. Get all patient visits that ended in a mortality outcome in or af
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:25:40,800 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2024-10-11 10:20:42,992 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
 </pre></div></div>
 </div>
 <div class="nboutput docutils container">
@@ -866,7 +866,7 @@ <h2>Example 1. Get all patient visits that ended in a mortality outcome in or af
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:25:40,801 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 1.161417 s
+2024-10-11 10:20:42,994 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 1.276970 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -922,7 +922,7 @@ <h2>Example 2. Get all measurements for female patient visits with <code class="
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:30:25,213 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
+2024-10-11 10:25:23,932 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm    - Query returned successfully!
 </pre></div></div>
 </div>
 <div class="nboutput docutils container">
@@ -930,7 +930,7 @@ <h2>Example 2. Get all measurements for female patient visits with <code class="
 </div>
 <div class="output_area stderr docutils container">
 <div class="highlight"><pre>
-2024-10-01 16:30:25,321 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 284.280096 s
+2024-10-11 10:25:23,934 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 280.691683 s
 </pre></div></div>
 </div>
 <div class="nboutput nblast docutils container">
@@ -956,8 +956,28 @@ <h2>Example 2. Get all measurements for female patient visits with <code class="
 <div class="output_area docutils container">
 <div class="highlight"><pre>
 measurement_concept_name
-Body weight            51
-No matching concept    49
+Respiratory rate                                                         52
+No matching concept                                                      21
+Glasgow coma score motor                                                  8
+Imipenem [Susceptibility] by Disk diffusion (KB)                          1
+Trimethoprim+Sulfamethoxazole [Susceptibility] by Disk diffusion (KB)     1
+Nitrofurantoin [Susceptibility] by Disk diffusion (KB)                    1
+Ciprofloxacin [Susceptibility] by Disk diffusion (KB)                     1
+cefTRIAXone [Susceptibility] by Disk diffusion (KB)                       1
+cefTAZidime [Susceptibility] by Disk diffusion (KB)                       1
+levoFLOXacin [Susceptibility] by Disk diffusion (KB)                      1
+Tobramycin [Susceptibility] by Disk diffusion (KB)                        1
+Gentamicin [Susceptibility] by Disk diffusion (KB)                        1
+Cefepime [Susceptibility] by Disk diffusion (KB)                          1
+Piperacillin+Tazobactam [Susceptibility] by Disk diffusion (KB)           1
+Ampicillin [Susceptibility] by Disk diffusion (KB)                        1
+Meropenem [Susceptibility] by Disk diffusion (KB)                         1
+Cefuroxime Parenteral [Susceptibility] by Disk diffusion (KB)             1
+ceFAZolin [Susceptibility] by Disk diffusion (KB)                         1
+Ampicillin+Sulbactam [Susceptibility] by Disk diffusion (KB)              1
+Piperacillin [Susceptibility] by Disk diffusion (KB)                      1
+Bacteria identified in Blood product unit.autologous by Culture           1
+Bacteria identified in Urine by Culture                                   1
 Name: count, dtype: int64[pyarrow]
 </pre></div></div>
 </div>
diff --git a/tutorials/omop.ipynb b/tutorials/omop.ipynb
index 4fea666..2b3f98a 100644
--- a/tutorials/omop.ipynb
+++ b/tutorials/omop.ipynb
@@ -45,10 +45,10 @@
    "id": "53009e6b",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-10-01T20:25:18.934140Z",
-     "iopub.status.busy": "2024-10-01T20:25:18.933018Z",
-     "iopub.status.idle": "2024-10-01T20:25:24.618322Z",
-     "shell.execute_reply": "2024-10-01T20:25:24.616469Z"
+     "iopub.execute_input": "2024-10-11T14:20:17.931387Z",
+     "iopub.status.busy": "2024-10-11T14:20:17.930459Z",
+     "iopub.status.idle": "2024-10-11T14:20:24.791593Z",
+     "shell.execute_reply": "2024-10-11T14:20:24.789865Z"
     }
    },
    "outputs": [
@@ -56,7 +56,7 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:25:23,333 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Database setup, ready to run queries!\n"
+      "2024-10-11 10:20:23,549 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Database setup, ready to run queries!\n"
      ]
     },
     {
@@ -151,10 +151,10 @@
    "id": "3a3d9cb9-fe40-45b8-ba2f-8de52a3b7f4f",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-10-01T20:25:24.626815Z",
-     "iopub.status.busy": "2024-10-01T20:25:24.625233Z",
-     "iopub.status.idle": "2024-10-01T20:25:25.114924Z",
-     "shell.execute_reply": "2024-10-01T20:25:25.113193Z"
+     "iopub.execute_input": "2024-10-11T14:20:24.799559Z",
+     "iopub.status.busy": "2024-10-11T14:20:24.797936Z",
+     "iopub.status.idle": "2024-10-11T14:20:25.796608Z",
+     "shell.execute_reply": "2024-10-11T14:20:25.794840Z"
     }
    },
    "outputs": [
@@ -162,14 +162,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:25:24,977 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2024-10-11 10:20:25,407 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:25:24,979 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.320281 s\n"
+      "2024-10-11 10:20:25,410 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.568863 s\n"
      ]
     },
     {
@@ -227,10 +227,10 @@
    "id": "030e2491-a7cc-42f3-a1ca-618212b3524c",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-10-01T20:25:25.121291Z",
-     "iopub.status.busy": "2024-10-01T20:25:25.120718Z",
-     "iopub.status.idle": "2024-10-01T20:25:25.920435Z",
-     "shell.execute_reply": "2024-10-01T20:25:25.918658Z"
+     "iopub.execute_input": "2024-10-11T14:20:25.804188Z",
+     "iopub.status.busy": "2024-10-11T14:20:25.803187Z",
+     "iopub.status.idle": "2024-10-11T14:20:26.806825Z",
+     "shell.execute_reply": "2024-10-11T14:20:26.804948Z"
     }
    },
    "outputs": [
@@ -238,14 +238,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:25:25,911 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2024-10-11 10:20:26,797 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:25:25,913 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.704169 s\n"
+      "2024-10-11 10:20:26,799 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.892611 s\n"
      ]
     },
     {
@@ -303,10 +303,10 @@
    "id": "0622b3df-2864-4f32-bd98-806019f59c50",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-10-01T20:25:25.927591Z",
-     "iopub.status.busy": "2024-10-01T20:25:25.926558Z",
-     "iopub.status.idle": "2024-10-01T20:25:39.588625Z",
-     "shell.execute_reply": "2024-10-01T20:25:39.586878Z"
+     "iopub.execute_input": "2024-10-11T14:20:26.815828Z",
+     "iopub.status.busy": "2024-10-11T14:20:26.814005Z",
+     "iopub.status.idle": "2024-10-11T14:20:41.646355Z",
+     "shell.execute_reply": "2024-10-11T14:20:41.644718Z"
     },
     "tags": []
    },
@@ -315,7 +315,7 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:25:32,849 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Database setup, ready to run queries!\n"
+      "2024-10-11 10:20:34,968 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Database setup, ready to run queries!\n"
      ]
     },
     {
@@ -357,10 +357,10 @@
    "id": "40ff2e83-75e4-4119-aa33-26f95e63ddaa",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-10-01T20:25:39.594828Z",
-     "iopub.status.busy": "2024-10-01T20:25:39.593798Z",
-     "iopub.status.idle": "2024-10-01T20:25:40.809394Z",
-     "shell.execute_reply": "2024-10-01T20:25:40.807647Z"
+     "iopub.execute_input": "2024-10-11T14:20:41.653888Z",
+     "iopub.status.busy": "2024-10-11T14:20:41.653061Z",
+     "iopub.status.idle": "2024-10-11T14:20:43.001614Z",
+     "shell.execute_reply": "2024-10-11T14:20:42.999935Z"
     },
     "tags": []
    },
@@ -369,14 +369,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:25:40,800 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2024-10-11 10:20:42,992 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:25:40,801 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 1.161417 s\n"
+      "2024-10-11 10:20:42,994 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 1.276970 s\n"
      ]
     },
     {
@@ -419,10 +419,10 @@
    "id": "46fd771c-5da7-4bce-aec7-08a5210a069b",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-10-01T20:25:40.816615Z",
-     "iopub.status.busy": "2024-10-01T20:25:40.815140Z",
-     "iopub.status.idle": "2024-10-01T20:30:25.330074Z",
-     "shell.execute_reply": "2024-10-01T20:30:25.328478Z"
+     "iopub.execute_input": "2024-10-11T14:20:43.009278Z",
+     "iopub.status.busy": "2024-10-11T14:20:43.007852Z",
+     "iopub.status.idle": "2024-10-11T14:25:23.942520Z",
+     "shell.execute_reply": "2024-10-11T14:25:23.940757Z"
     },
     "tags": []
    },
@@ -431,14 +431,14 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:30:25,213 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
+      "2024-10-11 10:25:23,932 \u001b[1;37mINFO\u001b[0m cycquery.orm    - Query returned successfully!\n"
      ]
     },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "2024-10-01 16:30:25,321 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 284.280096 s\n"
+      "2024-10-11 10:25:23,934 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 280.691683 s\n"
      ]
     },
     {
@@ -488,10 +488,10 @@
    "id": "d20a2581-f613-4ab8-9feb-3e84b8835db1",
    "metadata": {
     "execution": {
-     "iopub.execute_input": "2024-10-01T20:30:25.369069Z",
-     "iopub.status.busy": "2024-10-01T20:30:25.367822Z",
-     "iopub.status.idle": "2024-10-01T20:30:25.850784Z",
-     "shell.execute_reply": "2024-10-01T20:30:25.848960Z"
+     "iopub.execute_input": "2024-10-11T14:25:24.001717Z",
+     "iopub.status.busy": "2024-10-11T14:25:24.000976Z",
+     "iopub.status.idle": "2024-10-11T14:25:24.765883Z",
+     "shell.execute_reply": "2024-10-11T14:25:24.763631Z"
     },
     "tags": []
    },
@@ -500,8 +500,28 @@
      "data": {
       "text/plain": [
        "measurement_concept_name\n",
-       "Body weight            51\n",
-       "No matching concept    49\n",
+       "Respiratory rate                                                         52\n",
+       "No matching concept                                                      21\n",
+       "Glasgow coma score motor                                                  8\n",
+       "Imipenem [Susceptibility] by Disk diffusion (KB)                          1\n",
+       "Trimethoprim+Sulfamethoxazole [Susceptibility] by Disk diffusion (KB)     1\n",
+       "Nitrofurantoin [Susceptibility] by Disk diffusion (KB)                    1\n",
+       "Ciprofloxacin [Susceptibility] by Disk diffusion (KB)                     1\n",
+       "cefTRIAXone [Susceptibility] by Disk diffusion (KB)                       1\n",
+       "cefTAZidime [Susceptibility] by Disk diffusion (KB)                       1\n",
+       "levoFLOXacin [Susceptibility] by Disk diffusion (KB)                      1\n",
+       "Tobramycin [Susceptibility] by Disk diffusion (KB)                        1\n",
+       "Gentamicin [Susceptibility] by Disk diffusion (KB)                        1\n",
+       "Cefepime [Susceptibility] by Disk diffusion (KB)                          1\n",
+       "Piperacillin+Tazobactam [Susceptibility] by Disk diffusion (KB)           1\n",
+       "Ampicillin [Susceptibility] by Disk diffusion (KB)                        1\n",
+       "Meropenem [Susceptibility] by Disk diffusion (KB)                         1\n",
+       "Cefuroxime Parenteral [Susceptibility] by Disk diffusion (KB)             1\n",
+       "ceFAZolin [Susceptibility] by Disk diffusion (KB)                         1\n",
+       "Ampicillin+Sulbactam [Susceptibility] by Disk diffusion (KB)              1\n",
+       "Piperacillin [Susceptibility] by Disk diffusion (KB)                      1\n",
+       "Bacteria identified in Blood product unit.autologous by Culture           1\n",
+       "Bacteria identified in Urine by Culture                                   1\n",
        "Name: count, dtype: int64[pyarrow]"
       ]
      },