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Error handing for incorrectly-specified conditions/replicates #48

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AnnaSyme opened this issue Mar 9, 2017 · 1 comment
Open

Error handing for incorrectly-specified conditions/replicates #48

AnnaSyme opened this issue Mar 9, 2017 · 1 comment

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@AnnaSyme
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AnnaSyme commented Mar 9, 2017

On the configuration page, when specifying conditions and their replicates:

If only two conditions are specified (with one replicate in each), or each replicate is incorrectly saved as a "condition", the error is:

Error in approxfun(l, rule = 2) :
need at least two non-NA values to interpolate
Calls: voom -> approxfun
Execution halted

@tseemann suggests enhancement to catch this error better by telling user that each condition needs several replicates? (I know it does already say this in the uploading instructions though!).

@drpowell
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drpowell commented Mar 9, 2017

Yes, better error reporting there is a good idea. You don't actually need replicates for every condition (although you should)

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