From 8ae03300175404ff80c6d44c4e3aacb0dee0ef81 Mon Sep 17 00:00:00 2001 From: Vijini Mallawaarachchi Date: Fri, 15 Mar 2024 17:04:48 +1030 Subject: [PATCH] DEV: update curl commands to fix #43 --- phables/workflow/install.smk | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/phables/workflow/install.smk b/phables/workflow/install.smk index 2f2c796..053064f 100644 --- a/phables/workflow/install.smk +++ b/phables/workflow/install.smk @@ -40,7 +40,7 @@ rule phrogs_mmseqs_download: os.path.join("envs", "curl.yaml") shell: """ - curl -Lo {params.file} {params.url} + curl -Lko {params.file} {params.url} tar -xf {params.file} -C {params.db_path} rm -rf {params.file} """ @@ -54,7 +54,7 @@ rule smg_hmm_download: os.path.join("envs", "curl.yaml") shell: """ - curl -Lo {output} {params.url} + curl -Lko {output} {params.url} """ rule phrog_annot_download: @@ -66,5 +66,5 @@ rule phrog_annot_download: os.path.join("envs", "curl.yaml") shell: """ - curl -Lo {output} {params.url} + curl -Lko {output} {params.url} """ \ No newline at end of file