Question about running time

[XinyeZhao]

Hi scINSIGHT team,

When I tried running the examples following the vignette, it took quite a long time to run the sim.scobj = run_scINSIGHT(sim.scobj, K = seq(5,15,2), out.dir = './test_scInsight/test_save_sim/', num.cores = 5) even it's only the simulated data. I've started it two hours ago and it's still running now. Could you please tell me if it's normal？

Thanks

[Vivianstats]

Hi Xinye,

This seems to be much longer than the expected time. Can you provide more detailed information on the computing environment and session info?

[Jasper-XYZ]

Hi Vivian,
Of course! I ran it on the cluster with
R version 4.2.0 (2022-04-22) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 20.04.4 LTS scINSIGHT_0.1.4
It seemed to take about 3 hours to finish.

Thanks,
Xinye

[Vivianstats]

Hi Xinye,

My apologies. I was thinking of another software tool of our team why I replied last time, so please disregard my response. I will assign this to the developer of this package. He will let you know if this time is regular.

[sldyns]

Hi Xinye,

3 hours is a normal time. In fact, on my machine this took about 4 hours.