From 48943d64c7f8ebdd5a969d445c884b0313bd2919 Mon Sep 17 00:00:00 2001
From: Julie Iskander <34782134+jIskCoder@users.noreply.github.com>
Date: Wed, 18 Sep 2024 14:08:33 +1000
Subject: [PATCH] Update runpipeline.sh to use apptainer

---
 runpipeline.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/runpipeline.sh b/runpipeline.sh
index 6a0bd49..01f6841 100755
--- a/runpipeline.sh
+++ b/runpipeline.sh
@@ -1,4 +1,4 @@
 #!/bin/bash
 module purge
 module load nextflow/23.10.0
-nextflow run main.nf -profile singularity
+nextflow run main.nf -profile apptainer