diff --git a/nextflow.config b/nextflow.config index 21d881c..dcfc8ee 100644 --- a/nextflow.config +++ b/nextflow.config @@ -34,7 +34,7 @@ profiles { docker.enabled = false singularity.pullTimeout = "3h" process { - withLabel: 'BWAAlign|Samtools|Bcftools|Fastqc|Multiqc|RGridss|Rfilter' { + withLabel: 'BWAAlign|Samtools|Bcftools|Fastqc|Multiqc|RGridss|Rfilter|IndexDedup' { container = "ghcr.io/wehi-researchcomputing/nf-malaria-variant-analysis:latest" } } @@ -43,7 +43,7 @@ profiles { docker.enabled = true singularity.enabled = false process { - withLabel: 'BWAAlign|Samtools|Bcftools|Fastqc|Multiqc|RGridss|Rfilter' { + withLabel: 'BWAAlign|Samtools|Bcftools|Fastqc|Multiqc|RGridss|Rfilter|IndexDedup' { container = "ghcr.io/wehi-researchcomputing/nf-malaria-variant-analysis:latest" } }