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Are there any plan to add support for repeat unit with IUPAC nucleotides? #9

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ymcki opened this issue Jul 24, 2023 · 3 comments
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enhancement New feature or request

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@ymcki
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ymcki commented Jul 24, 2023

Thanks for developing NanoRepeat. From my own testing, it seems to be doing much better than straglr.

However, I find that NanoRepeat doesn't support IUPAC nucleotides in repeat unit but straglr does. It would be great if IUPAC support is added.

If that's too much to ask, is it possible to support poly-alanine repeat which has a repeat unit of GCN?

It occurs in PHOX2B gene and is a well documented trinucleotide repeat disorder.
https://academic.oup.com/hmg/article/13/suppl_2/R235/619705

Thanks a lot in advance.

@fangli80
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Sure. I'm happy to add support for GCN.

Thanks for requesting this.
Li

@ymcki
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ymcki commented Jul 25, 2023

Great! Looking forward to that in the next release.

@fangli80 fangli80 added the enhancement New feature or request label Jul 25, 2023
@eostrow
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eostrow commented Aug 26, 2024

Any updates on this feature?

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