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wipac-cicd.yml
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name: wipac ci/cd
on: [push]
env:
CI_TEST: true
TEST_JSON_DIR: tests/resources
jobs:
py-versions:
runs-on: ubuntu-latest
outputs:
matrix: ${{ steps.versions.outputs.matrix }}
steps:
- uses: actions/checkout@v3
- id: versions
uses: WIPACrepo/[email protected]
flake8:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- uses: actions/setup-python@v4
- uses: WIPACrepo/[email protected]
mypy:
needs: [py-versions]
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
py3: ${{ fromJSON(needs.py-versions.outputs.matrix) }}
steps:
- uses: actions/checkout@v3
- uses: actions/setup-python@v4
with:
python-version: ${{ matrix.py3 }}
- uses: WIPACrepo/[email protected]
py-setup:
runs-on: ubuntu-latest
steps:
# dependabot can't access normal secrets
# & don't run non-branch triggers (like tags)
# & we don't want to trigger an update on PR's merge to main/master/default (which is a branch)
# IOW: only for non-dependabot branches
- if: |
github.actor != 'dependabot[bot]' &&
github.ref_type == 'branch' &&
format('refs/heads/{0}', github.event.repository.default_branch) != github.ref
name: checkout (only for non-dependabot non-default branches)
uses: actions/checkout@v3
with:
token: ${{ secrets.PERSONAL_ACCESS_TOKEN }}
- if: |
github.actor != 'dependabot[bot]' &&
github.ref_type == 'branch' &&
format('refs/heads/{0}', github.event.repository.default_branch) != github.ref
name: wipac-dev-py-setup-action (only for non-dependabot non-default branches)
uses: WIPACrepo/[email protected]
with:
base-keywords: WIPAC IceCube
unit-tests:
needs: [py-versions]
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
py3: ${{ fromJSON(needs.py-versions.outputs.matrix) }}
steps:
- uses: actions/checkout@v3
- uses: actions/setup-python@v3
with:
python-version: ${{ matrix.py3 }}
- name: run
run: |
pip install --upgrade pip wheel setuptools
pip install .[tests]
export OIDC_CLIENT_SECRETS=$(realpath resources/dummy_client_secrets_for_web_app.json)
pytest -vvv tests/unit
test-build-docker:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- uses: docker/setup-buildx-action@v2
- uses: docker/build-push-action@v3
with:
context: .
cache-from: type=gha
cache-to: type=gha,mode=min
file: Dockerfile
tags: moudash:local
integration-tests:
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
integration_test_ingest_type: [
xlsx,
mongodump_v2,
mongodump_v3,
]
services:
mongo:
image: mongo:3
ports:
- 27017:27017
steps:
- uses: actions/checkout@v3
- uses: docker/setup-buildx-action@v2
- uses: docker/build-push-action@v3
with:
context: .
cache-from: type=gha
# cache-to: type=gha,mode=min
file: Dockerfile
tags: moudash:local
load: true
- name: mongo prep
run: |
sudo apt update
sudo apt install wget curl gnupg2 software-properties-common apt-transport-https ca-certificates lsb-release
curl -fsSL https://www.mongodb.org/static/pgp/server-6.0.asc|sudo gpg --dearmor -o /etc/apt/trusted.gpg.d/mongodb-6.gpg
echo "deb [ arch=amd64,arm64 ] https://repo.mongodb.org/apt/ubuntu $(lsb_release -cs)/mongodb-org/6.0 multiverse" | sudo tee /etc/apt/sources.list.d/mongodb-org-6.0.list
sudo apt update
sudo apt install mongodb-org mongodb-database-tools
set -x
# ingest data
if [ "${{ matrix.integration_test_ingest_type }}" = "mongodump_v2" ]; then
if [[ ! $(grep -o 'LIVE_COLLECTION' $TEST_JSON_DIR/v2-mo-supplemental.json) ]]; then
exit 1 # the ingested collection must be LIVE_COLLECTION
fi
mongoimport -d mo-supplemental -c LIVE_COLLECTION --type json --file $TEST_JSON_DIR/v2-mo-supplemental.json
mongoimport -d mo -c LIVE_COLLECTION --jsonArray --type json --file $TEST_JSON_DIR/v2-mo.json
# -> v3 includes v2 data
elif [ "${{ matrix.integration_test_ingest_type }}" = "mongodump_v3" ]; then
sed -i 's/LIVE_COLLECTION/100/g' $TEST_JSON_DIR/v2-mo-supplemental.json
mongoimport -d mo-supplemental -c 100 --type json --file $TEST_JSON_DIR/v2-mo-supplemental.json
mongoimport -d mo -c 100 --type json --jsonArray --file $TEST_JSON_DIR/v2-mo.json
if [[ ! $(grep -o 'LIVE_COLLECTION' $TEST_JSON_DIR/v3-mo-supplemental.json) ]]; then
exit 1 # the ingested collection must be LIVE_COLLECTION
fi
mongoimport -d mo-supplemental -c LIVE_COLLECTION --type json --file $TEST_JSON_DIR/v3-mo-supplemental.json
mongoimport -d mo -c LIVE_COLLECTION --jsonArray --type json --file $TEST_JSON_DIR/v3-mo.json
fi
- name: run
run: |
# rest server (background)
docker run --network="host" --rm -i --name rest \
--env CI_TEST=true \
moudash:local \
python -m rest_server --override-krs-insts ./resources/dummy-krs-data.json \
&
sleep 30
# make test script
DIR="test-script-dir"
mkdir $DIR
echo "#!/bin/bash" >> $DIR/test-script.sh
echo "set -xe" >> $DIR/test-script.sh
echo "pip install .[tests]" >> $DIR/test-script.sh
echo "python -m pytest -vvv tests/integration --exitfirst" >> $DIR/test-script.sh
chmod +x $DIR/test-script.sh
cat $DIR/test-script.sh
# test
docker run --network="host" --rm -i --name test \
--env CI_TEST=true \
--env OIDC_CLIENT_SECRETS=resources/dummy_client_secrets_for_web_app.json \
--env INTEGRATION_TEST_INGEST_TYPE=${{ matrix.integration_test_ingest_type }} \
--mount type=bind,source=$(realpath $DIR),target=/local/$DIR \
moudash:local \
/local/$DIR/test-script.sh
- name: mongodump
if: always()
run: |
set -x
out_dir="./mongodump-jsons"
tmp_file="temp.js"
echo "print('_ ' + db.getCollectionNames())" > $tmp_file
for database in mo mo-supplemental; do
echo "dumping $database..."
for col in $(mongosh $database $tmp_file | grep '_' | awk '{print $2}' | tr ',' ' '); do
mongoexport -d $database -c $col -o "$out_dir/exp_${database}_${col}.json"
done
done
more $out_dir/* | cat
- name: dump rest logs
if: always()
run: |
docker logs rest || true
- name: dump mongo logs
if: always()
run: |
docker logs "${{ job.services.mongo.id }}" || true
release:
# only run on main/master/default
if: format('refs/heads/{0}', github.event.repository.default_branch) == github.ref
needs: [flake8, mypy, py-setup, unit-tests, integration-tests]
runs-on: ubuntu-latest
concurrency: release
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0
token: ${{ secrets.PERSONAL_ACCESS_TOKEN }}
- name: Python Semantic Release
uses: python-semantic-release/[email protected]
with:
github_token: ${{ secrets.PERSONAL_ACCESS_TOKEN }}
# repository_username: __token__
# repository_password: ${{ secrets.PYPI_TOKEN }}