[WISE Bug]: on base ubuntu:20.04 Docker Image (not in github) install missing libgomp.so.1

[spydmobile]

Contact Details

No response

What happened?

created a fresh docker container on image ubuntu:20.04 from dockerhub.
updated apt
installed wget
pulled wise-ubuntu2004-1.0.0-beta.deb
installed it
ran wise --version and got:
/usr/lib/wise/wise: error while loading shared libraries: libgomp.so.1: cannot open share

This does not happen in ubuntu 20.04 on github:

Version

(Ubuntu 2020) v1.0.0-beta

What component are you seeing the problem on?

No response

Relevant log output

root@03aa5a2ed4f4:/# cat /etc/issue
Ubuntu 20.04.5 LTS \n \l

root@03aa5a2ed4f4:/# uname -a
Linux 03aa5a2ed4f4 3.10.0-1160.el7.x86_64 #1 SMP Mon Oct 19 16:18:59 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux
root@03aa5a2ed4f4:/# wise --version
/usr/lib/wise/wise: error while loading shared libraries: libgomp.so.1: cannot open shared object file: No such file or directory
root@03aa5a2ed4f4:/# ls -ls *.deb
44992 -rw-r--r-- 1 root root 46070712 Jan 18 10:10 wise-ubuntu2004-1.0.0-beta.deb
root@03aa5a2ed4f4:/#

Approvals Process

• Testing For Issue
• Executive Approval
• Merge

[spydmobile]

this seems to be a common issue when:

The program was linked against a specific version of libgomp (libgomp.so.1) and it can only be used by that one. 

[spydmobile]

workaround to get container working:
apt-get install -y libgomp1
BUT why do I have to do this in docker but NOT in github?

[spydmobile]

this is proven fixed. This container is vanilla Ubuntu 20.04 with no libgomp installed.

> base_typescript@1.0.0 test-wise

> node dist/test.wise.js


Clearing old results

Running the job

The job validated

stdout: 

The job was executed

stdout: 

Reading the results

W.I.S.E. Fire Growth Model (Version 1.0.5-beta released on 2023-02-06)


FGM File Name: job

Date of Report: February  7, 2023 23:09


Simulation Settings:

	Scenario Inputs:

		Name: ZF035-21 Best Case Scenario

		Start Time: July 25, 2021 13:00:00

		End Time:   July 26, 2021 13:00:00
�
		Ignitions:

			Name: ign5

		Fuel Breaks:

		Active Grids and Patches:

			Name: wthrptch10

		Weather Stream:

			wthrstn5: wthrstrm5 		[July 25, 2021 00:00:00] - [August  4, 2021 00:59:59]

		Comments:

		This is the best case Scenario


	Burning Conditions:

		Date           Start       End   HISI >  HFWI >    WS >    RH <

		2021/07/25  00:00:00  23:59:59       0      19    0.00      95

		2021/07/26  00:00:00  23:59:59       0      19    0.00      95

	Fire Weather: True

		Spatially interpolate FWI System values: False

		Calculate FWI System values from spatially interpolated weather: False

		Recursively calculate FWI System values from spatially interpolated weather: True

	Fire Behavior:

		FMC Settings:

			FMC (%) Override: False

		Terrain Effect On:                    True

		Green-up on:                         False

		Grass Phenology on:                  False

		Grass Curing on:                     False

		Breaching:                            True

		Spotting:                             True

		Percentile Rate of Spread:           False

	Propagation:

		Display interval: 24:00:00

		Maximum time step during acceleration: 00:02:00

		Distance resolution (Grid Cells):  Dynamic

		Perimeter resolution (Grid Cells): Dynamic

		Stop fire spread at data boundary:   False

		Purge non-displayable time steps:    False


Landscape Properties:

	Grid Information:

		Cell Size (m): 250.0

		Columns and Rows: 199 x 189

		Grid Size: 49.75 km x 47.25 km


	Location of Lower Left Corner:

		62.809148�,-117.111409�


	Elevation Statistics (m):

		Min:    156.0

		Max:    324.0

		Mean:   214.0

		Median: 214.0


	Time Zone Settings:

		Time Zone: MDT Mountain Daylight Time -6:00:00


	Project Comments:



Landscape Grids:

	Projection:     dataset

	Fuel Grid:      fuels

	Look-up Table:  Inputs/dataset.lut

	Elevation Grid: elevation


Fuel Patches:

	Landscape Fuel Type Patch:

	Polygon Fuel Type Patch:

Active Fuel Types :

	101: C-1 Spruce-Lichen Woodland (C-1) [ ]

	102: C-2 Boreal Spruce (C-2) [ ]

	108: D-1/D-2 Aspen (D-1/D-2) [ ]

	31, 116: O-1a Matted Grass (O-1a) [ 60.00% Deg. of Curing; 0.35kg/m² Grass Fuel Load ]

	40, 109: M-1 Boreal Mixedwood - Leafless (M-1) [ 50.00 PC ]

	40, 109: M-1 Boreal Mixedwood - Leafless (M-1) [ 50.00 PC ]

	119: Non-fuel (Non-fuel) [ ]

	118: Water (Non-fuel) [ ]


Active Fuel Types (modified):


Weather Station:

	Name: wthrstn5

	Coordinates:  63.072420�,-116.746515�

	Elevation:    100.0 m

	Weather Stream Name: wthrstrm5

		Start Date: July 25, 2021 00:00:00

		End Date:   August  4, 2021 00:59:59

		Imported From File:                     True

		Imported From Ensemble:                 False

		Any Data Generated From Diurnal Curves: False

		Any Data User Modified:                 False

		Yesterday's Daily Starting Codes:

			FFMC:                                 80.6

			DMC:                                  45.1

			DC:                                  376.2

			Precipitation (13:00:01 - 23:59:59):   1.5 mm

		Today's Hourly Starting Code:

			FFMC:                                 94.0

			@ Hour:                                N/A

		FWI Values:

			Using calculated FWI System values

		Method of Hourly FFMC Calculation:
�

n


Weather Patches:


Weather Grids:

	Name: wthrptch10

		Start Time: July 25, 2021 13:00:00

		End Time:   July 26, 2021 13:00:00
�
			Comments:

				ZF035-21 Best Case Patch



Ignitions:

	Name: ign5

		Start Time: July 25, 2021 13:00:00

		Ignition Type: Polygon

		Comments:



W.I.S.E. Fire Growth Model (Version 1.0.5-beta released on 2023-02-06)


FGM File Name: job

Date of Report: February  7, 2023 23:09


Simulation Settings:

	Scenario Inputs:

		Name: ZF035-21 Worst Case Scenario

		Start Time: July 25, 2021 13:00:00

		End Time:   July 26, 2021 13:00:00
�
		Ignitions:

			Name: ign5

		Fuel Breaks:

		Active Grids and Patches:

			Name: wthrptch11

		Weather Stream:

			wthrstn5: wthrstrm5 		[July 25, 2021 00:00:00] - [August  4, 2021 00:59:59]

		Comments:

		This is the worst case Scenario


	Burning Conditions:

		Date           Start       End   HISI >  HFWI >    WS >    RH <

		2021/07/25  00:00:00  23:59:59       0      19    0.00      95

		2021/07/26  00:00:00  23:59:59       0      19    0.00      95

	Fire Weather: True

		Spatially interpolate FWI System values: False

		Calculate FWI System values from spatially interpolated weather: False

		Recursively calculate FWI System values from spatially interpolated weather: True

	Fire Behavior:

		FMC Settings:

			FMC (%) Override: False

		Terrain Effect On:                    True

		Green-up on:                         False

		Grass Phenology on:                  False

		Grass Curing on:                     False

		Breaching:                            True

		Spotting:                             True

		Percentile Rate of Spread:           False

	Propagation:

		Display interval: 24:00:00

		Maximum time step during acceleration: 00:02:00

		Distance resolution (Grid Cells):  Dynamic

		Perimeter resolution (Grid Cells): Dynamic

		Stop fire spread at data boundary:   False

		Purge non-displayable time steps:    False


Landscape Properties:

	Grid Information:

		Cell Size (m): 250.0

		Columns and Rows: 199 x 189

		Grid Size: 49.75 km x 47.25 km


	Location of Lower Left Corner:

		62.809148�,-117.111409�


	Elevation Statistics (m):

		Min:    156.0

		Max:    324.0

		Mean:   214.0

		Median: 214.0


	Time Zone Settings:

		Time Zone: MDT Mountain Daylight Time -6:00:00


	Project Comments:



Landscape Grids:

	Projection:     dataset

	Fuel Grid:      fuels

	Look-up Table:  Inputs/dataset.lut

	Elevation Grid: elevation


Fuel Patches:

	Landscape Fuel Type Patch:

	Polygon Fuel Type Patch:

Active Fuel Types :

	101: C-1 Spruce-Lichen Woodland (C-1) [ ]

	102: C-2 Boreal Spruce (C-2) [ ]

	108: D-1/D-2 Aspen (D-1/D-2) [ ]

	31, 116: O-1a Matted Grass (O-1a) [ 60.00% Deg. of Curing; 0.35kg/m² Grass Fuel Load ]

	40, 109: M-1 Boreal Mixedwood - Leafless (M-1) [ 50.00 PC ]

	40, 109: M-1 Boreal Mixedwood - Leafless (M-1) [ 50.00 PC ]

	119: Non-fuel (Non-fuel) [ ]

	118: Water (Non-fuel) [ ]


Active Fuel Types (modified):


Weather Station:

	Name: wthrstn5

	Coordinates:  63.072420�,-116.746515�

	Elevation:    100.0 m

	Weather Stream Name: wthrstrm5

		Start Date: July 25, 2021 00:00:00

		End Date:   August  4, 2021 00:59:59

		Imported From File:                     True

		Imported From Ensemble:                 False

		Any Data Generated From Diurnal Curves: False

		Any Data User Modified:                 False

		Yesterday's Daily Starting Codes:

			FFMC:                                 80.6

			DMC:                                  45.1

			DC:                                  376.2

			Precipitation (13:00:01 - 23:59:59):   1.5 mm

		Today's Hourly Starting Code:

			FFMC:                                 94.0

			@ Hour:                                N/A

		FWI Values:

			Using calculated FWI System values

		Method of Hourly FFMC Calculation:
�

n


Weather Patches:


Weather Grids:

	Name: wthrptch11

		Start Time: July 25, 2021 13:00:00

		End Time:   July 26, 2021 13:00:00
�
			Comments:

				ZF035-21 Worst Case Patch



Ignitions:

	Name: ign5

		Start Time: July 25, 2021 13:00:00

		Ignition Type: Polygon

		Comments:



ENVIRONMENT {

  npm_config_user_agent: 'npm/8.19.3 node/v16.19.0 linux x64 workspaces/false',

  HOSTNAME: '60e127e263f9',

  npm_node_execpath: '/usr/bin/node',

  npm_config_noproxy: '',

  HOME: '/root',

  npm_package_json: '/usr/src/app/package.json',

  npm_config_userconfig: '/root/.npmrc',

  npm_config_local_prefix: '/usr/src/app',

  COLOR: '0',

  npm_config_metrics_registry: 'https://registry.npmjs.org/',

  npm_config_prefix: '/usr',

  npm_config_cache: '/root/.npm',

  npm_config_node_gyp: '/usr/lib/node_modules/npm/node_modules/node-gyp/bin/node-gyp.js',

  PATH: '/usr/src/app/node_modules/.bin:/usr/src/node_modules/.bin:/usr/node_modules/.bin:/node_modules/.bin:/usr/lib/node_modules/npm/node_modules/@npmcli/run-script/lib/node-gyp-bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin',

  NODE: '/usr/bin/node',

  npm_package_name: 'base_typescript',

  CONTAINER_NAME: 'WISE-BETA-DEMO',

  npm_lifecycle_script: 'node dist/test.wise.js',

  HOST_JOBS_FOLDER: 'wisedemo_jobs',

  npm_package_version: '1.0.0',

  npm_lifecycle_event: 'test-wise',

  npm_config_globalconfig: '/usr/etc/npmrc',

  npm_config_init_module: '/root/.npm-init.js',

  npm_execpath: '/usr/lib/node_modules/npm/bin/npm-cli.js',

  PWD: '/usr/src/app',

  npm_config_global_prefix: '/usr',

  npm_command: 'run-script',
�

,

  INIT_CWD: '/usr/src/app',

  EDITOR: 'vi'

}

CWD /usr/src/app

Environment was: npm_config_user_agent=npm/8.19.3 node/v16.19.0 linux x64 workspaces/false

HOSTNAME=60e127e263f9

npm_node_execpath=/usr/bin/node

npm_config_noproxy=

HOME=/root

npm_package_json=/usr/src/app/package.json

npm_config_userconfig=/root/.npmrc

npm_config_local_prefix=/usr/src/app

COLOR=0

npm_config_metrics_registry=https://registry.npmjs.org/

npm_config_prefix=/usr

npm_config_cache=/root/.npm

npm_config_node_gyp=/usr/lib/node_modules/npm/node_modules/node-gyp/bin/node-gyp.js

PATH=/usr/src/app/node_modules/.bin:/usr/src/node_modules/.bin:/usr/node_modules/.bin:/node_modules/.bin:/usr/lib/node_modules/npm/node_modules/@npmcli/run-script/lib/node-gyp-bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin

NODE=/usr/bin/node

npm_package_name=base_typescript

CONTAINER_NAME=WISE-BETA-DEMO

npm_lifecycle_script=node dist/test.wise.js

HOST_JOBS_FOLDER=wisedemo_jobs

npm_package_version=1.0.0

npm_lifecycle_event=test-wise

npm_config_globalconfig=/usr/etc/npmrc

npm_config_init_module=/root/.npm-init.js

npm_execpath=/usr/lib/node_modules/npm/bin/npm-cli.js

PWD=/usr/src/app

npm_config_global_prefix=/usr

npm_command=run-script

TZ=

INIT_CWD=/usr/src/app
�

[spydmobile]

@RobBryce sadly this is still not working right. I thought you solved it, BUT it was me installing build essentials that satisfied the missing libgomp dependancy, so this is still broken as of v1.0.6-beta.1