quarto-book-macos.yaml

on:
  push:
    branches: main
  pull_request:
    branches: main

name: Book-MacOS

jobs:
  build-deploy:
    runs-on: macos-14
    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
      PANDOC_VERSION: "3.1.11"
      RETICULATE_PYTHON_ENV: /opt/.virtualenvs/r-tensorflow
    steps:
      - uses: actions/checkout@v4

      - name: Install Quarto
        uses: quarto-dev/quarto-actions/setup@v2
        with:
          version: 1.4.550

      - uses: r-lib/actions/setup-r@v2
        with:
          use-public-rspm: true
          r-version: '4.3.2'
          extra-repositories: 'https://grantmcdermott.r-universe.dev'

      - uses: r-lib/actions/setup-r-dependencies@v2

      - name: Install Pandoc
        uses: r-lib/actions/setup-pandoc@v2
        with:
          pandoc-version: ${{ env.PANDOC_VERSION }}

      - name: Install TinyTeX
        uses: r-lib/actions/setup-tinytex@v2
        env:
          # install full prebuilt version
          TINYTEX_INSTALLER: TinyTeX

      - name: Install Fonts From System
        run: |
          export HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK=1
          brew install optipng jags virtualenv
          brew install --cask xquartz
          brew tap homebrew/cask-fonts
          brew install --cask font-noto-sans-cjk-sc font-noto-serif-cjk-sc
          fc-list | sort

      - name: Setup Python
        run: |
          sudo mkdir -p /opt/.virtualenvs/r-tensorflow
          sudo chown -R $(whoami):staff /opt/.virtualenvs/r-tensorflow
          virtualenv -p /usr/bin/python3 $RETICULATE_PYTHON_ENV
          source $RETICULATE_PYTHON_ENV/bin/activate
          pip3 install -r docker/requirements.txt
          python -m spacy download en_core_web_sm
          python -m spacy download zh_core_web_sm
          deactivate
          
      - name: Install LaTeX packages
        run: |
          if(!require('tinytex')) install.packages('tinytex')
          tinytex::tlmgr_install(readLines("docker/texlive.txt"))
          tinytex::tl_pkgs()
          tikzDevice::tikzTest("m", engine = "xetex")
          tikzDevice::tikzTest("$\\sin(x^2/2 - y^2/4 + 3) \\cos(2 x + 1 - \\exp(y))$")
        shell: Rscript {0}
        
      - name: Reinstall R packages from source
        run: |
          install.packages(c("Matrix", "MatrixModels", "rjags", "lme4", "TMB", "glmmTMB"), repos = "https://cran.r-project.org/", type = "source")
        shell: Rscript {0}

      - name: Render Book
        run: |
          source $RETICULATE_PYTHON_ENV/bin/activate
          quarto check
          quarto render
        shell: bash
        env:
          RETICULATE_PYTHON_ENV: /opt/.virtualenvs/r-tensorflow
          RETICULATE_PYTHON: /opt/.virtualenvs/r-tensorflow/bin/python

      - name: Deploy book to bookdown.org
        if: github.event_name == 'push'
        env:
          CONNECT_API_KEY: ${{ secrets.RSC_BOOKDOWN_TOKEN }}
          CONTENT_ID: ${{ secrets.RSC_BOOKDOWN_APP_ID }}
        run: |
          Rscript '_deploy.R'
        shell: bash

      - name: Upload book folder for debug
        if: failure()
        uses: actions/upload-artifact@v3
        with:
          name: Upload Book
          path: _book