From 21f0f53e235ef5c39a670573cf2e578c8078a8f3 Mon Sep 17 00:00:00 2001 From: Youssef-Harby Date: Fri, 26 Apr 2024 12:13:55 +0300 Subject: [PATCH 1/2] fix: Error running OMDownloader #19 --- overturemapsdownloader/dask_qrys.py | 80 +- poetry.lock | 1825 ++++++++++++++------------- pyproject.toml | 21 +- 3 files changed, 989 insertions(+), 937 deletions(-) diff --git a/overturemapsdownloader/dask_qrys.py b/overturemapsdownloader/dask_qrys.py index df0b847..6d937fe 100644 --- a/overturemapsdownloader/dask_qrys.py +++ b/overturemapsdownloader/dask_qrys.py @@ -1,17 +1,31 @@ import logging import dask.dataframe as dd +import dask import geopandas as gpd import dask_geopandas as dgpd -from overturemapsdownloader.utils_helper import read_geospatial_data from dask.diagnostics import ProgressBar +from shapely.geometry import Polygon, box ProgressBar().register() +from dask.distributed import Client, LocalCluster + +# cluster = LocalCluster() +# client = Client(cluster) +dask.config.set({"dataframe.query-planning": False}) + + +def compute_dataframe(df): + try: + result = df.compute() + return result + except Exception as e: + logging.error(f"Error computing DataFrame: {str(e)}") + return None def get_df_from_parquet( parquet_path, engine="pyarrow", - # columns=["geometry"], # comment to get all columns by default storage_options={"anon": True}, parquet_file_extensions=False, ): @@ -22,7 +36,6 @@ def get_df_from_parquet( logging.info(f"Reading Parquet file from {parquet_path}") df = dd.read_parquet( parquet_path, - # columns=columns, # comment to get all columns by default engine=engine, index="id", dtype_backend=engine, @@ -35,48 +48,57 @@ def get_df_from_parquet( return None -def make_gdf_from_df(df, crs=4326): - """ - Converts a Dask DataFrame to a Dask GeoDataFrame. - """ - geometry = ( - df["geometry"] - .map_partitions(gpd.GeoSeries.from_wkb, meta=gpd.GeoSeries(name="geometry")) - .set_crs(crs) - ) - return dgpd.from_dask_dataframe(df, geometry=geometry) +def make_gdf_from_df(df, crs="EPSG:4326"): + try: + if "geometry" in df.columns: + # Ensure the 'geometry' column is processed as expected + geometry = df["geometry"].map_partitions( + gpd.GeoSeries.from_wkb, meta=gpd.GeoSeries() + ) + df["geometry"] = ( + geometry # Explicitly assigning the processed column back to the DataFrame + ) + + # Convert to GeoDataFrame + gdf = dgpd.from_dask_dataframe(df, geometry="geometry") + gdf.crs = crs + + # Debug output + print("Conversion successful, GeoDataFrame created.") + return gdf + else: + raise ValueError("Geometry column missing in DataFrame") + except Exception as e: + logging.error(f"Failed to convert DataFrame to GeoDataFrame: {str(e)}") + return None def get_clipped_gdf(gdf, bbox_filter): - """ - Clips the GeoDataFrame using a bounding box. - """ - return gdf[gdf.geometry.within(bbox_filter)] + if isinstance(bbox_filter, tuple): + bbox_filter = box(*bbox_filter) # Create Polygon from tuple + elif isinstance(bbox_filter, Polygon): + bbox_filter = gpd.GeoSeries( + [bbox_filter] + ) # Convert Polygon to GeoSeries if not already + + local_gdf = gdf.compute() # Compute to get GeoDataFrame + + clipped_gdf = local_gdf[local_gdf.geometry.within(bbox_filter.iloc[0])] + return clipped_gdf if __name__ == "__main__": logging.basicConfig(level=logging.INFO) - # TODO: Handle columns with official schemas - schema_yaml_path = "overturemapsdownloader/schemas/schema/places/place.yaml" - - bbox_filter = read_geospatial_data( - "examples/bbox.geojson", as_shapely_str=True, output_format="Custom" - ) + bbox_filter = (31.429, 29.998, 31.531, 30.102) # Example bbox coordinates df = get_df_from_parquet( parquet_path="s3://overturemaps-us-west-2/release/2023-07-26-alpha.0/theme=places/type=*/*", - # columns=get_columns_from_om_schema_yaml(schema_yaml_path), ) if df is not None: gdf = make_gdf_from_df(df) - - # TODO: Add filter by country (also in config) clipped_gdf = get_clipped_gdf(gdf, bbox_filter) - print(clipped_gdf.head()) else: logging.error("Could not read the DataFrame from the Parquet file.") - - # TODO: Write to file; Parquet by default. Allow user to convert to other formats (e.g., via ogr2ogr). diff --git a/poetry.lock b/poetry.lock index 13ba110..8d7fc84 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,14 +1,14 @@ -# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. [[package]] name = "adlfs" -version = "2024.2.0" +version = "2024.4.1" description = "Access Azure Datalake Gen1 with fsspec and dask" optional = false python-versions = ">=3.8" files = [ - {file = "adlfs-2024.2.0-py3-none-any.whl", hash = "sha256:6514fb147032eea843e4b773c557df90cf6a929185edc7c97f7a12b91bfc1fa1"}, - {file = "adlfs-2024.2.0.tar.gz", hash = "sha256:860f5ddbd7f3c2553d84a101717dc5736e823305e0d51e8c0058bc85a7fa304d"}, + {file = "adlfs-2024.4.1-py3-none-any.whl", hash = "sha256:acea94612ddacaa34ea8c6babcc95b8da6982f930cdade7a86fbd17382403e16"}, + {file = "adlfs-2024.4.1.tar.gz", hash = "sha256:75530a45447f358ae53c5c39c298b8d966dae684be84db899f63b94cd96fc000"}, ] [package.dependencies] @@ -25,108 +25,108 @@ tests = ["arrow", "dask[dataframe]", "docker", "pytest", "pytest-mock"] [[package]] name = "aiobotocore" -version = "2.11.2" +version = "2.12.3" description = "Async client for aws services using botocore and aiohttp" optional = false python-versions = ">=3.8" files = [ - 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[[package]] name = "types-python-dateutil" -version = "2.8.19.20240106" +version = "2.9.0.20240316" description = "Typing stubs for python-dateutil" optional = false python-versions = ">=3.8" files = [ - {file = "types-python-dateutil-2.8.19.20240106.tar.gz", hash = "sha256:1f8db221c3b98e6ca02ea83a58371b22c374f42ae5bbdf186db9c9a76581459f"}, - {file = "types_python_dateutil-2.8.19.20240106-py3-none-any.whl", hash = "sha256:efbbdc54590d0f16152fa103c9879c7d4a00e82078f6e2cf01769042165acaa2"}, + {file = "types-python-dateutil-2.9.0.20240316.tar.gz", hash = "sha256:5d2f2e240b86905e40944dd787db6da9263f0deabef1076ddaed797351ec0202"}, + {file = "types_python_dateutil-2.9.0.20240316-py3-none-any.whl", hash = "sha256:6b8cb66d960771ce5ff974e9dd45e38facb81718cc1e208b10b1baccbfdbee3b"}, ] [[package]] name = "typing-extensions" -version = "4.9.0" +version = "4.11.0" description = "Backported and Experimental Type Hints for Python 3.8+" optional = false python-versions = ">=3.8" files = [ - {file = "typing_extensions-4.9.0-py3-none-any.whl", hash = "sha256:af72aea155e91adfc61c3ae9e0e342dbc0cba726d6cba4b6c72c1f34e47291cd"}, - {file = "typing_extensions-4.9.0.tar.gz", hash = "sha256:23478f88c37f27d76ac8aee6c905017a143b0b1b886c3c9f66bc2fd94f9f5783"}, + {file = "typing_extensions-4.11.0-py3-none-any.whl", hash = "sha256:c1f94d72897edaf4ce775bb7558d5b79d8126906a14ea5ed1635921406c0387a"}, + {file = "typing_extensions-4.11.0.tar.gz", hash = "sha256:83f085bd5ca59c80295fc2a82ab5dac679cbe02b9f33f7d83af68e241bea51b0"}, ] [[package]] @@ -3936,18 +3965,18 @@ dev = ["flake8", "flake8-annotations", "flake8-bandit", "flake8-bugbear", "flake [[package]] name = "urllib3" -version = "2.0.7" +version = "2.2.1" description = "HTTP library with thread-safe connection pooling, file post, and more." optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" files = [ - {file = "urllib3-2.0.7-py3-none-any.whl", hash = "sha256:fdb6d215c776278489906c2f8916e6e7d4f5a9b602ccbcfdf7f016fc8da0596e"}, - {file = "urllib3-2.0.7.tar.gz", hash = "sha256:c97dfde1f7bd43a71c8d2a58e369e9b2bf692d1334ea9f9cae55add7d0dd0f84"}, + {file = "urllib3-2.2.1-py3-none-any.whl", hash = "sha256:450b20ec296a467077128bff42b73080516e71b56ff59a60a02bef2232c4fa9d"}, + {file = "urllib3-2.2.1.tar.gz", hash = "sha256:d0570876c61ab9e520d776c38acbbb5b05a776d3f9ff98a5c8fd5162a444cf19"}, ] [package.extras] brotli = ["brotli (>=1.0.9)", "brotlicffi (>=0.8.0)"] -secure = ["certifi", "cryptography (>=1.9)", "idna (>=2.0.0)", "pyopenssl (>=17.1.0)", "urllib3-secure-extra"] +h2 = ["h2 (>=4,<5)"] socks = ["pysocks (>=1.5.6,!=1.5.7,<2.0)"] zstd = ["zstandard (>=0.18.0)"] @@ -3990,17 +4019,17 @@ files = [ [[package]] name = "websocket-client" -version = "1.7.0" +version = "1.8.0" description = "WebSocket client for Python with low level API options" optional = false python-versions = ">=3.8" files = [ - {file = "websocket-client-1.7.0.tar.gz", hash = "sha256:10e511ea3a8c744631d3bd77e61eb17ed09304c413ad42cf6ddfa4c7787e8fe6"}, - {file = "websocket_client-1.7.0-py3-none-any.whl", hash = "sha256:f4c3d22fec12a2461427a29957ff07d35098ee2d976d3ba244e688b8b4057588"}, + {file = "websocket_client-1.8.0-py3-none-any.whl", hash = "sha256:17b44cc997f5c498e809b22cdf2d9c7a9e71c02c8cc2b6c56e7c2d1239bfa526"}, + {file = "websocket_client-1.8.0.tar.gz", hash = "sha256:3239df9f44da632f96012472805d40a23281a991027ce11d2f45a6f24ac4c3da"}, ] [package.extras] -docs = ["Sphinx (>=6.0)", "sphinx-rtd-theme (>=1.1.0)"] +docs = ["Sphinx (>=6.0)", "myst-parser (>=2.0.0)", "sphinx-rtd-theme (>=1.1.0)"] optional = ["python-socks", "wsaccel"] test = ["websockets"] @@ -4096,13 +4125,13 @@ files = [ [[package]] name = "xyzservices" -version = "2023.10.1" +version = "2024.4.0" description = "Source of XYZ tiles providers" optional = false python-versions = ">=3.8" files = [ - {file = "xyzservices-2023.10.1-py3-none-any.whl", hash = "sha256:6a4c38d3a9f89d3e77153eff9414b36a8ee0850c9e8b85796fd1b2a85b8dfd68"}, - {file = "xyzservices-2023.10.1.tar.gz", hash = "sha256:091229269043bc8258042edbedad4fcb44684b0473ede027b5672ad40dc9fa02"}, + {file = "xyzservices-2024.4.0-py3-none-any.whl", hash = "sha256:b83e48c5b776c9969fffcfff57b03d02b1b1cd6607a9d9c4e7f568b01ef47f4c"}, + {file = "xyzservices-2024.4.0.tar.gz", hash = "sha256:6a04f11487a6fb77d92a98984cd107fbd9157fd5e65f929add9c3d6e604ee88c"}, ] [[package]] @@ -4221,18 +4250,18 @@ files = [ [[package]] name = "zipp" -version = "3.17.0" +version = "3.18.1" description = "Backport of pathlib-compatible object wrapper for zip files" optional = false python-versions = ">=3.8" files = [ - {file = "zipp-3.17.0-py3-none-any.whl", hash = "sha256:0e923e726174922dce09c53c59ad483ff7bbb8e572e00c7f7c46b88556409f31"}, - {file = "zipp-3.17.0.tar.gz", hash = "sha256:84e64a1c28cf7e91ed2078bb8cc8c259cb19b76942096c8d7b84947690cabaf0"}, + {file = "zipp-3.18.1-py3-none-any.whl", hash = "sha256:206f5a15f2af3dbaee80769fb7dc6f249695e940acca08dfb2a4769fe61e538b"}, + {file = "zipp-3.18.1.tar.gz", hash = "sha256:2884ed22e7d8961de1c9a05142eb69a247f120291bc0206a00a7642f09b5b715"}, ] [package.extras] -docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"] -testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"] +docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] +testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"] [extras] gdal-support = ["gdal"] @@ -4240,4 +4269,4 @@ gdal-support = ["gdal"] [metadata] lock-version = "2.0" python-versions = "^3.10" -content-hash = "279d584dea6e12d515c26b9ee4faf635d95c202d795c8e2a5e6a33e6f86a3e54" +content-hash = "7e492c5afa8909353d2f4ecaabe838af99a863694afeb1e6c074f8d097226a1c" diff --git a/pyproject.toml b/pyproject.toml index 50ab934..fa2f807 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -11,19 +11,20 @@ OMDownloader = "overturemapsdownloader.main:app" [tool.poetry.dependencies] python = "^3.10" -typer = {extras = ["all"], version = "^0.9.0"} +typer = {extras = ["all"], version = "^0.12.3"} jupyter = "^1.0.0" -dask-geopandas = "^0.3.1" -pyarrow = "^15.0.0" -adlfs = "^2024.2.0" -duckdb = "^0.10.0" +dask-geopandas = { git = "https://github.com/geopandas/dask-geopandas.git", branch = "main" } +pyarrow = "^15.0.2" +adlfs = "^2024.4.0" +duckdb = "^0.10.1" geopandas = "^0.14.3" -shapely = "^2.0.3" -gdal = {version = "^3.8.4", optional = true} -fiona = "^1.9.5" +shapely = "^2.0.4" +gdal = "3.8.5" +fiona = "^1.9.6" fastparquet = "^2024.2.0" -s3fs = "^2024.2.0" -dask = {extras = ["complete"], version = "^2024.2.0"} +s3fs = "^2024.3.1" +dask = {extras = ["complete", "dataframe"], version = "^2024.4.1"} +pyproj = "^3.6.1" [tool.poetry.extras] gdal_support = ["gdal"] From e8499580710faa9454d5fcb904caba402a828cb8 Mon Sep 17 00:00:00 2001 From: Youssef-Harby Date: Fri, 26 Apr 2024 12:18:11 +0300 Subject: [PATCH 2/2] Update --- .github/workflows/docker-build-push.yml | 2 +- .github/workflows/poetry-pypi.yml | 2 +- Dockerfile | 2 +- config.yml | 2 +- docker-compose.yml | 2 +- overturemapsdownloader/schemas | 2 +- pyproject.toml | 2 +- 7 files changed, 7 insertions(+), 7 deletions(-) diff --git a/.github/workflows/docker-build-push.yml b/.github/workflows/docker-build-push.yml index ae5f1be..1c05eba 100644 --- a/.github/workflows/docker-build-push.yml +++ b/.github/workflows/docker-build-push.yml @@ -9,7 +9,7 @@ on: jobs: docker: - runs-on: self-hosted + runs-on: ubuntu-latest env: DOCKER_TAG: latest diff --git a/.github/workflows/poetry-pypi.yml b/.github/workflows/poetry-pypi.yml index 511eea1..5e60cf6 100644 --- a/.github/workflows/poetry-pypi.yml +++ b/.github/workflows/poetry-pypi.yml @@ -9,7 +9,7 @@ jobs: publish: runs-on: ubuntu-latest container: - image: ghcr.io/osgeo/gdal:ubuntu-full-3.7.2 + image: ghcr.io/osgeo/gdal:ubuntu-full-3.8.5 env: POETRY_NO_INTERACTION: 1 diff --git a/Dockerfile b/Dockerfile index 9c53e15..ae1813f 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,4 +1,4 @@ -ARG GDAL_VERSION=3.8.4 +ARG GDAL_VERSION=3.8.5 FROM ghcr.io/osgeo/gdal:ubuntu-full-${GDAL_VERSION} LABEL maintainer="Youssef Harby " diff --git a/config.yml b/config.yml index 41cdb8b..07939a4 100644 --- a/config.yml +++ b/config.yml @@ -1,5 +1,5 @@ global_variables: - release: "2024-02-15-alpha.0" + release: "2024-04-16-beta.0" s3_region: "us-west-2" default_theme: "places" default_type: "*" diff --git a/docker-compose.yml b/docker-compose.yml index 2251ab0..87d6cf8 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -8,7 +8,7 @@ services: args: - OS_ARCH=linux - PLATFORM_ARCH=aarch64 # amd64, i386, rpi, aarch64 - - GDAL_VERSION=3.7.2 + - GDAL_VERSION=3.8.5 image: ghcr.io/youssef-harby/overturemapsdownloader:latest command: ["jupyter", "notebook", "--port=8888", "--no-browser", "--ip=0.0.0.0", "--NotebookApp.token=''", "--allow-root"] restart: unless-stopped diff --git a/overturemapsdownloader/schemas b/overturemapsdownloader/schemas index 18023ca..7c9c6e7 160000 --- a/overturemapsdownloader/schemas +++ b/overturemapsdownloader/schemas @@ -1 +1 @@ -Subproject commit 18023ca39cbee55df604897d8d22689dce54f574 +Subproject commit 7c9c6e7c807120345812b2a76d264b890d4bfc0f diff --git a/pyproject.toml b/pyproject.toml index fa2f807..19e9cac 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "overturemapsdownloader" -version = "0.1.7" +version = "0.1.8" description = "Overture Maps Downloader simplifies geospatial data manipulation" authors = ["Youssef-Harby "] readme = "README.md"