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BENG 183 Applied Genomic Technologies

All of the final papers have been received!

Final Paper Submission 2022Fall

To submit the final project, please follow these steps:
  1. To start, fork this repository. Fork a repo - GitHub Docs
  2. Clone the repository to your computer.
  3. Upload your files and commit changes to complete your solution.
  4. Push/sync the changes up to GitHub.
  5. Create a pull request on the original repository to turn in the assignment. Creating a pull request - GitHub Docs

Tips: You can install Github Desktop to use GUI instead of command line.

Requirements:
  1. Please put the final paper of your group in the "Final_Paper" Folder in this repository. Create a folder and put your paper .md files together with figures within the folder.
  2. The name of the Folder should be "Group_Number_Topic". e.g. "Group_1_RNA-seq".
  3. The final paper is the “class handout” you would give to your future class who attend your mini-lecture. Please use the chapters of 3D Genome Book as examples of a final paper. An outstanding final paper should read like a book chapter or a section of a book chapter for a future textbook.
Grading:

The final paper will be graded by the 3 TAs. Each TA will give a score in 1-10 to each paper. The average score will be the score of this final paper of this team. All team members will receive the same score.

Acknowledgments

We thank BENG183 alumni: John David Lin, Samuel Beppler, Paige Dubelko, Pericles Corkos, Elisha Beebe, Mengyi Liu, Kelsey Dang, Katy Zou, Diego Quintero, Derek Jow, Victoria Tom, Joey Sun.

Chapter1 Molecular Biology

Chapter2 DNA sequencing

Chapter3 RNA sequencing and data analysis

Chapter4 ChIP-seq and data analysis

Chapter5 Introduction to precision medicine

Chapter6 Introduction to hypothesis testing

Chapter7 Machine Learning

Appendix: hands-on tutorials