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Is is possible to load reference annotation as gtf or gff from gencode/ensembl? #29

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LucoLab opened this issue Feb 28, 2018 · 1 comment
Open

Is is possible to load reference annotation as gtf or gff from gencode/ensembl? #29

LucoLab opened this issue Feb 28, 2018 · 1 comment
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@frankyan @caoxiaoyi03
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LucoLab commented Feb 28, 2018

Is add_geneAnnot.sh only working with UCSC annotation ?
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Unfortunately GFF/GTF files are not supported yet. Currently only UCSC annotation format or plain BED format is supported. We are exploring the possibility of including GFF/GTF support in upcoming updates.

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@frankyan @caoxiaoyi03 @LucoLab