Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

question about HiCtool_global_map_observed.sh #2

Open
rachelzhu123 opened this issue Oct 14, 2020 · 0 comments
Open

question about HiCtool_global_map_observed.sh #2

rachelzhu123 opened this issue Oct 14, 2020 · 0 comments

Comments

@rachelzhu123
Copy link

hi,
i use hictool to generate hic contact matrix. your work do help me a lot. however i met some questions and need your help.
below is my script
##########my script###########
mypath/HiCtool-master/scripts/HiCtool_global_map_observed.sh
-i HiC_project_object.hdf5
-h mypath/HiCtool-master/scripts/
-b 1000000
-s hg38
-c my_chrom_size_file_path
-p 24
###########my problem###########
cat: ./observed_1000000/matrix_full_line_observed_1.txt: There is no such file or directory
In tutorial homepage i didn't find ,
i use hictool to generate hic contact matrix. your work do help me a lot. however i met some questions and need your help.
below is my script
##########my script###########
mypath/HiCtool-master/scripts/HiCtool_global_map_observed.sh
-i HiC_project_object.hdf5
-h mypath/HiCtool-master/scripts/
-b 1000000
-s hg38
-c my_chrom_size_file_path
-p 24
###########my problem###########
cat: ./observed_1000000/matrix_full_line_observed_1.txt: There is no such file or directory
In tutorial homepage i didn't find description about this file. please help me.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant