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A temporal extracellular transcriptome atlas of human preimplantation development

  • For SILVER-seq data processing file: IVF.sh (the de-duplication code file nudup.py)
    • prerequisite tools: Trimmomatic (version 0.36); STAR (version 2.5.4b), featureCounts (version1.6.1)
  • For scRNA-seq data processing file: scRNA_seq.sh
    • prerequisite tools: Trimmomatic (version 0.36); STAR (version 2.5.4b), featureCounts (version1.6.1)
  • For IVF data analysis files: IVF_analysis/ and IVF_wave/
    • prerequisite tool(s): R/RStudio