From fea378e891bc682c9e62946004aac4641804faf6 Mon Sep 17 00:00:00 2001 From: Zilong-Li Date: Mon, 11 Dec 2023 16:39:56 +0100 Subject: [PATCH] clean up --- cleanup | 2 +- cleanup.win | 2 +- cran-comments.md | 23 +++++++++-------------- 3 files changed, 11 insertions(+), 16 deletions(-) diff --git a/cleanup b/cleanup index aa905b9..1675add 100755 --- a/cleanup +++ b/cleanup @@ -1,4 +1,4 @@ #!/bin/sh -rm -f src/*.o src/*.so src/*.dll src/*.dylib +rm -f src/htslib-1.18/config.h src/*.o src/*.so src/*.dll src/*.dylib cd src/htslib-1.18/ && make clean && cd - diff --git a/cleanup.win b/cleanup.win index aa905b9..1675add 100755 --- a/cleanup.win +++ b/cleanup.win @@ -1,4 +1,4 @@ #!/bin/sh -rm -f src/*.o src/*.so src/*.dll src/*.dylib +rm -f src/htslib-1.18/config.h src/*.o src/*.so src/*.dll src/*.dylib cd src/htslib-1.18/ && make clean && cd - diff --git a/cran-comments.md b/cran-comments.md index 326842c..4496f50 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -1,20 +1,15 @@ ## R CMD check results -❯ checking top-level files ... WARNING - A complete check needs the 'checkbashisms' script. - See section ‘Configure and cleanup’ in the ‘Writing R Extensions’ - manual. +New submission -❯ checking for GNU extensions in Makefiles ... NOTE - GNU make is a SystemRequirements. +* Possibly misspelled words in DESCRIPTION: + BCF (7:162) + htslib (7:84, 7:133) + VCF (2:55, 7:158) + vcfpp (7:209) -❯ checking pragmas in C/C++ headers and code ... NOTE - File which contains pragma(s) suppressing diagnostics: - ‘src/htslib-1.18/htscodecs/htscodecs/fqzcomp_qual.c’ +Size of tarball: 5132553 bytes -❯ checking compilation flags used ... NOTE - Compilation used the following non-portable flag(s): - ‘-mavx2’ ‘-mavx512f’ ‘-mpopcnt’ - -0 errors ✔ | 1 warning ✖ | 3 notes ✖ +* checking for GNU extensions in Makefiles ... NOTE +GNU make is a SystemRequirements.