{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":29976936,"defaultBranch":"main","name":"hpgltools","ownerLogin":"abelew","currentUserCanPush":false,"isFork":true,"isEmpty":false,"createdAt":"2015-01-28T16:35:17.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/65773?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1720794970.0","currentOid":""},"activityList":{"items":[{"before":"5779a65508e724127c3394e5c0b4c56d3b650901","after":"8e8ccc1d4964ea51d08f4600e77b41db681d5316","ref":"refs/heads/main","pushedAt":"2024-08-08T19:40:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abelew","name":"Ashton Trey Belew","path":"/abelew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65773?s=80&v=4"},"commit":{"message":"Small volcano/ma plotter changes, an important suppa plot fix, a\nregression test function, and a few small changes\n\nI was not properly handling filenames in my suppa plotter\nThere is a fun new function for regression testing, and a bunch of small\nstyle changes.","shortMessageHtmlLink":"Small volcano/ma plotter changes, an important suppa plot fix, a"}},{"before":null,"after":"cedcfed69a0f052054355ad8b8c90f7310b95650","ref":"refs/heads/better_models","pushedAt":"2024-07-12T14:36:10.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"abelew","name":"Ashton Trey Belew","path":"/abelew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65773?s=80&v=4"},"commit":{"message":"almost finished generalizing the various model-based functions.\n\nWhen finished, it should be possible to easily setup, test, and use all\nsorts of experimental models with the tools that accept them, including\ninteraction/linear mixed/etc.","shortMessageHtmlLink":"almost finished generalizing the various model-based functions."}},{"before":"905bc29d0c26aca569d62dcf7275b1340db392b9","after":"5779a65508e724127c3394e5c0b4c56d3b650901","ref":"refs/heads/main","pushedAt":"2024-06-28T14:57:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abelew","name":"Ashton Trey Belew","path":"/abelew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65773?s=80&v=4"},"commit":{"message":"a modified version of Theresa's SV fstatistics method.","shortMessageHtmlLink":"a modified version of Theresa's SV fstatistics method."}},{"before":"85cedd42cda9fc43a0cdbb95a119ad383890998e","after":"905bc29d0c26aca569d62dcf7275b1340db392b9","ref":"refs/heads/main","pushedAt":"2024-06-24T13:52:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abelew","name":"Ashton Trey Belew","path":"/abelew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65773?s=80&v=4"},"commit":{"message":"apparently I forgot to rerun roxygen","shortMessageHtmlLink":"apparently I forgot to rerun roxygen"}},{"before":"c0734bc9ebc943a51151f99a6658e5fc83eb2168","after":"85cedd42cda9fc43a0cdbb95a119ad383890998e","ref":"refs/heads/main","pushedAt":"2024-06-22T19:49:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abelew","name":"Ashton Trey Belew","path":"/abelew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65773?s=80&v=4"},"commit":{"message":"analog function for all_gprofiler for clusterProfiler.","shortMessageHtmlLink":"analog function for all_gprofiler for clusterProfiler."}},{"before":"a9c449da1ad030646696f07d9b749481f8057ab6","after":"c0734bc9ebc943a51151f99a6658e5fc83eb2168","ref":"refs/heads/main","pushedAt":"2024-06-20T20:50:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abelew","name":"Ashton Trey Belew","path":"/abelew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65773?s=80&v=4"},"commit":{"message":"small cleanup for using keepers in all_pairwise().","shortMessageHtmlLink":"small cleanup for using keepers in all_pairwise()."}},{"before":"3cccab46482e92b9be27202092c88a9977bc333b","after":"a9c449da1ad030646696f07d9b749481f8057ab6","ref":"refs/heads/main","pushedAt":"2024-06-14T20:20:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abelew","name":"Ashton Trey Belew","path":"/abelew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65773?s=80&v=4"},"commit":{"message":"Optionally keep underscores in condition names, umi_tools metadata\ncollection.","shortMessageHtmlLink":"Optionally keep underscores in condition names, umi_tools metadata"}},{"before":"90aa84777e0162c3f24c4f6c6f6a1fd58bd2b469","after":"3cccab46482e92b9be27202092c88a9977bc333b","ref":"refs/heads/main","pushedAt":"2024-06-07T03:02:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abelew","name":"Ashton Trey Belew","path":"/abelew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65773?s=80&v=4"},"commit":{"message":"some small metadata changes.","shortMessageHtmlLink":"some small metadata changes."}},{"before":"9f4e3a4edaa7f3ef90b70f62d318ca3671cc8698","after":"90aa84777e0162c3f24c4f6c6f6a1fd58bd2b469","ref":"refs/heads/main","pushedAt":"2024-05-31T13:27:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abelew","name":"Ashton Trey Belew","path":"/abelew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65773?s=80&v=4"},"commit":{"message":"improved the upset generation function for de tables\n\nThis function now returns a list which may be queried for gene IDs.","shortMessageHtmlLink":"improved the upset generation function for de tables"}},{"before":"9d0ee215ff19c79199cc0ceba29d40ac1a2fcc2c","after":"9f4e3a4edaa7f3ef90b70f62d318ca3671cc8698","ref":"refs/heads/main","pushedAt":"2024-05-29T22:07:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abelew","name":"Ashton Trey Belew","path":"/abelew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65773?s=80&v=4"},"commit":{"message":"small change to subset_expt to make it maintain the tximport\ninformation.\n\n I have also been making small changes to gprofiler, metadata\n collection, and some variant classifications.","shortMessageHtmlLink":"small change to subset_expt to make it maintain the tximport"}},{"before":"2e8066c4b98ba87ab6edd87a181f22d5d392e0f0","after":"9d0ee215ff19c79199cc0ceba29d40ac1a2fcc2c","ref":"refs/heads/main","pushedAt":"2024-05-19T14:28:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abelew","name":"Ashton Trey Belew","path":"/abelew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65773?s=80&v=4"},"commit":{"message":"another small biomart change, need to cast month as numeric in the\ncorrect place.","shortMessageHtmlLink":"another small biomart change, need to cast month as numeric in the"}},{"before":"e1d48794403c1a1dc144d7ac1aeea568818e8cfd","after":"2e8066c4b98ba87ab6edd87a181f22d5d392e0f0","ref":"refs/heads/main","pushedAt":"2024-05-19T01:42:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abelew","name":"Ashton Trey Belew","path":"/abelew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65773?s=80&v=4"},"commit":{"message":"small biomart change for load_biomart_go().","shortMessageHtmlLink":"small biomart change for load_biomart_go()."}},{"before":"71478bd28fb107ce76e1a224fb698f5d5ad40783","after":"e1d48794403c1a1dc144d7ac1aeea568818e8cfd","ref":"refs/heads/main","pushedAt":"2024-05-17T19:42:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abelew","name":"Ashton Trey Belew","path":"/abelew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65773?s=80&v=4"},"commit":{"message":"some minor cleanups for writing gprofiler output files.","shortMessageHtmlLink":"some minor cleanups for writing gprofiler output files."}},{"before":"f2df80066729c5861986202fdc8678141fe8a236","after":"71478bd28fb107ce76e1a224fb698f5d5ad40783","ref":"refs/heads/main","pushedAt":"2024-05-16T22:33:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abelew","name":"Ashton Trey Belew","path":"/abelew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65773?s=80&v=4"},"commit":{"message":"some cleanups, most notably for topgo","shortMessageHtmlLink":"some cleanups, most notably for topgo"}},{"before":"0578afb5ea5d3f80e6f47080ecd38adbdd287c32","after":"f2df80066729c5861986202fdc8678141fe8a236","ref":"refs/heads/main","pushedAt":"2024-05-16T01:50:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abelew","name":"Ashton Trey Belew","path":"/abelew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65773?s=80&v=4"},"commit":{"message":"for no reason I can discern, load_biomart_annotations() started\nfailing...\n\nUnless I recast the month argument to numeric!","shortMessageHtmlLink":"for no reason I can discern, load_biomart_annotations() started"}},{"before":"a216aab30813e171c4501ebd730931f7f6fb4255","after":"0578afb5ea5d3f80e6f47080ecd38adbdd287c32","ref":"refs/heads/main","pushedAt":"2024-05-15T19:13:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abelew","name":"Ashton Trey Belew","path":"/abelew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65773?s=80&v=4"},"commit":{"message":"a few forgotten docstrings and hopefully silencing some silly\nvariancePartition errors which don't matter.","shortMessageHtmlLink":"a few forgotten docstrings and hopefully silencing some silly"}},{"before":"d64c1a6de2588171b58cf6cd4a9a5ee5b2cda071","after":"a216aab30813e171c4501ebd730931f7f6fb4255","ref":"refs/heads/main","pushedAt":"2024-05-15T03:29:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abelew","name":"Ashton Trey Belew","path":"/abelew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65773?s=80&v=4"},"commit":{"message":"made a silly typeo in my last commit","shortMessageHtmlLink":"made a silly typeo in my last commit"}},{"before":"2a5445e58830c7565e61f4606c72a43336bcb1a7","after":"d64c1a6de2588171b58cf6cd4a9a5ee5b2cda071","ref":"refs/heads/main","pushedAt":"2024-05-14T17:00:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abelew","name":"Ashton Trey Belew","path":"/abelew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65773?s=80&v=4"},"commit":{"message":"revisited topGO, cleaned up its table function.","shortMessageHtmlLink":"revisited topGO, cleaned up its table function."}},{"before":"5724af44020342bae6b772b2204d35478ec6e9d8","after":"2a5445e58830c7565e61f4606c72a43336bcb1a7","ref":"refs/heads/main","pushedAt":"2024-05-14T00:54:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abelew","name":"Ashton Trey Belew","path":"/abelew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65773?s=80&v=4"},"commit":{"message":"small change to make self-evaluate clearer","shortMessageHtmlLink":"small change to make self-evaluate clearer"}},{"before":"fdca3a44c0d8f0a074e26009567b259139482a8c","after":"5724af44020342bae6b772b2204d35478ec6e9d8","ref":"refs/heads/main","pushedAt":"2024-05-10T21:11:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abelew","name":"Ashton Trey Belew","path":"/abelew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65773?s=80&v=4"},"commit":{"message":" few changes in response to the tmrc2 container.","shortMessageHtmlLink":" few changes in response to the tmrc2 container."}},{"before":"dc622702c04e91de9a73ea4972dd34727ce430fc","after":"fdca3a44c0d8f0a074e26009567b259139482a8c","ref":"refs/heads/main","pushedAt":"2024-05-05T18:27:29.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"abelew","name":"Ashton Trey Belew","path":"/abelew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65773?s=80&v=4"},"commit":{"message":"neglected to export get_snp_sets!","shortMessageHtmlLink":"neglected to export get_snp_sets!"}},{"before":"b2b1349eded7ee94aceac079c6607b87b8b1f0e7","after":"dc622702c04e91de9a73ea4972dd34727ce430fc","ref":"refs/heads/main","pushedAt":"2024-04-30T19:36:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abelew","name":"Ashton Trey Belew","path":"/abelew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65773?s=80&v=4"},"commit":{"message":"scattered changes, most importantly options to change reading variants\nbehavior.","shortMessageHtmlLink":"scattered changes, most importantly options to change reading variants"}},{"before":"aa687f3a52d8aaf87ed099ca29177a0f15dcbc8a","after":"b2b1349eded7ee94aceac079c6607b87b8b1f0e7","ref":"refs/heads/main","pushedAt":"2024-04-24T18:52:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abelew","name":"Ashton Trey Belew","path":"/abelew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65773?s=80&v=4"},"commit":{"message":"fixed typeo in the previous commit: s/sample_ids/ids/g","shortMessageHtmlLink":"fixed typeo in the previous commit: s/sample_ids/ids/g"}},{"before":"24f917df4a7665fa4d6050160cc8117a26eab4d5","after":"aa687f3a52d8aaf87ed099ca29177a0f15dcbc8a","ref":"refs/heads/main","pushedAt":"2024-04-24T18:08:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abelew","name":"Ashton Trey Belew","path":"/abelew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65773?s=80&v=4"},"commit":{"message":"changed create_expt to be more careful about the values in the\nbatch/condition column.\n\ne.g. It now checks explicitly for NAs and warns the user. In addition\nwhen reading data from tximport, it now explicitly sets the column names\nto the sample IDs (which I am reasonably certain tximport previously did\nfor me)","shortMessageHtmlLink":"changed create_expt to be more careful about the values in the"}},{"before":"36feec29029c89e028aef8e8a8aab3557bdb5f0a","after":"24f917df4a7665fa4d6050160cc8117a26eab4d5","ref":"refs/heads/main","pushedAt":"2024-04-18T20:11:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abelew","name":"Ashton Trey Belew","path":"/abelew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65773?s=80&v=4"},"commit":{"message":"small plot_metadata change.","shortMessageHtmlLink":"small plot_metadata change."}},{"before":"69803b3a00da80ff1732ab5a20584c34bc62faa1","after":"36feec29029c89e028aef8e8a8aab3557bdb5f0a","ref":"refs/heads/main","pushedAt":"2024-04-18T03:01:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abelew","name":"Ashton Trey Belew","path":"/abelew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65773?s=80&v=4"},"commit":{"message":"small version check for all_pairwise()","shortMessageHtmlLink":"small version check for all_pairwise()"}},{"before":"d0a537a7d8706119bb9f316a58082b5b9a72ef66","after":"69803b3a00da80ff1732ab5a20584c34bc62faa1","ref":"refs/heads/main","pushedAt":"2024-04-17T17:50:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abelew","name":"Ashton Trey Belew","path":"/abelew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65773?s=80&v=4"},"commit":{"message":"docstrings and export the de upsetr function.","shortMessageHtmlLink":"docstrings and export the de upsetr function."}},{"before":"31bacdf03b6f37f1277e44be276420f3db4d4bd6","after":"d0a537a7d8706119bb9f316a58082b5b9a72ef66","ref":"refs/heads/main","pushedAt":"2024-04-16T22:02:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abelew","name":"Ashton Trey Belew","path":"/abelew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65773?s=80&v=4"},"commit":{"message":"it looks like whatever changed in Biobase::combine to cause it to fail\nhas been reverted.","shortMessageHtmlLink":"it looks like whatever changed in Biobase::combine to cause it to fail"}},{"before":"ef769d4552ead8b8f9a9c2c0eba2b0b035c86fd4","after":"31bacdf03b6f37f1277e44be276420f3db4d4bd6","ref":"refs/heads/main","pushedAt":"2024-04-08T17:21:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abelew","name":"Ashton Trey Belew","path":"/abelew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65773?s=80&v=4"},"commit":{"message":"small makefile change, a couple upset options.","shortMessageHtmlLink":"small makefile change, a couple upset options."}},{"before":"665d711f23babdbc0a7a87fe609b037a4e2133cc","after":"ef769d4552ead8b8f9a9c2c0eba2b0b035c86fd4","ref":"refs/heads/main","pushedAt":"2024-04-04T20:44:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abelew","name":"Ashton Trey Belew","path":"/abelew","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/65773?s=80&v=4"},"commit":{"message":"changed dependency install target in makefile.","shortMessageHtmlLink":"changed dependency install target in makefile."}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAElZ1wVgA","startCursor":null,"endCursor":null}},"title":"Activity ยท abelew/hpgltools"}