requirements.extra

#!/bin/bash
#----------------------------------------------------------------------------
shopt -s globstar

# Determine which extra dependencies need to be installed
EXTRAS=$1

if [ $EXTRAS = 1 ]; then
    # Install pysat, which currently is not vetted for Windows.
    # Although older ocbpy work with pysat >= 2.0.0, the testing suite is not
    # provided in versions below 2.2.1 and the custom function interface
    # changed in pysat 3.0.0
    pip install pysat>=3.0.1
    mkdir $HOME/pysatData
    python -c "import pysat; pysat.params['data_dirs'] = '$HOME/pysatData'"
    echo "Installed pysat"
elif [ $EXTRAS = 2 ]; then
    # Install code for ssj_auroral_boundary on linux
    #
    # Get CDF software and install it
    wget https://spdf.gsfc.nasa.gov/pub/software/cdf/dist/cdf38_0/linux/cdf38_0-dist-cdf.tar.gz
    tar xzf cdf38_0-dist-cdf.tar.gz
    make OS=linux ENV=gnu -C cdf38_0-dist/ all
    make INSTALLDIR=$HOME -C cdf38_0-dist/ install
    # Running this command for definitions will break matplotlib
    # . $HOME/bin/definitions.B
    # Define environment variables in the .yml file

    # Install the python requirements
    pip install scipy matplotlib h5py networkx ffnet ephem spacepy colorlog
    pip install zenodo_get
    pip install git+https://github.com/lkilcommons/geospacepy-lite.git@master
    pip install git+https://github.com/lkilcommons/ssj_auroral_boundary@master

    echo "CDF library is installed here: " $CDF_LIB
    echo "Finished extra installs for SSJ_Auroral_Boundary"
elif [ $EXTRAS -ge 32  ]; then
    # Download ffnet and CDF using curl
    choco install curl

    # Download and install CDF.  ffnet is not needed.
    # This will need to be updated for version number and python version number
    # in the future
    declare -a EXE_FILE=("cdf37_1_0-setup-$EXTRAS.exe")
    declare -a SOURCE=("https://spdf.sci.gsfc.nasa.gov/pub/software/cdf/dist/cdf37_1/windows/")

    for cind in ${!EXE_FILE[@]}; do
	curl.exe -o ${EXE_FILE[$cind]} ${SOURCE[$cind]}${EXE_FILE[$cind]}

	if [ -f ${EXE_FILE[$cind]} ]; then
	    # This doesn't actually work, for some reason
	    echo "RUN COMMAND: ${EXE_FILE[$cind]} /install /q1"
	    start /wait "" ${EXE_FILE[$cind]} /install /q1
	else
	    echo "Curl failure downloading " $APPVERYOR_BUILD_FOLDER\\${EXE_FILE[$cind]}
	fi
    done

    # Install code for ssj_auroral_boundary on windows (EXTRAS is 32 or 64)
    $PYTHON\\python.exe -m pip install wheel scipy matplotlib networkx h5py
    $PYTHON\\python.exe -m pip install ephem spacepy colorlog zenodo_get
    $PYTHON\\python.exe -m pip install git+https://github.com/lkilcommons/geospacepy-lite.git@master
    $PYTHON\\python.exe -m pip install git+https://github.com/lkilcommons/ssj_auroral_boundary@master

    echo "CDF library is installed here: " $CDF_LIB
    ls $CDF_LIB
    echo "TEST TO FIND WHERE CDF IS INSTALLED"
    IFS=":"
    read -a list <<< "$PATH"
    for ll in ${list[@]}; do
	llist=($ll/**)
	if [[ "$ll" == *"cdf"* ]]; then
	    echo "CDF LOCATION? " $ll
	fi
	for lll in ${llist[@]}; do
	    if [ -d $lll ]; then
		if [[ "$lll" == *"cdf"* ]]; then
		    echo "CDF LOCATION? " $lll
		fi
	    fi
	done
    done
    echo "Finished extra installs for SSJ_Auroral_Boundary"
fi