-
Notifications
You must be signed in to change notification settings - Fork 0
/
acronym.tex
111 lines (61 loc) · 4.24 KB
/
acronym.tex
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
\newacronym{atp}{ATP}{Adenosine tri-phospate}
\newacronym{tcf}{TCF/Lef}{T-Cell Factor/Lymphoid enhancer-binding factor. \bcat\ co-factors}
\newacronym{tgfbsf}{TGFB$_\text{sf}$}{Transforming Growth Factor Beta superfamily}
\newacronym{tgfb}{\tgf}{Transforming Growth Factor Beta (ligand)}
\newacronym{bmp}{BMP}{Bone Morphogenic Protein (ligand). A family within \tgfbsf}
\newacronym{gdf}{GDF}{Growth and Differentiation Factor (ligand). A family within \tgfbsf}
\newacronym{alk}{ALK}{Activin receptor-Like kinase. Type I \tgfbsf\ receptors}
\newacronym{jup}{JUP}{Junctional Plakoglobin (\textgamma{catenin}). Paralog of \bcat}
\newacronym{bcat}{CTNNB1}{Catenin, Beta 1 (\bcat). Transcription factor activated by canonical Wnt signaling}
\newacronym{fzd}{FZD}{Frizzled. Receptor for Wnts}
\newacronym{mh1}{MH1}{MAD homology 1. DNA-binding domain of the rSmad proteins}
\newacronym{mh2}{MH2}{MAD homology 2. Protein-binding domain of the rSmad proteins}
\newacronym{dpp}{DPP}{Decapentaplegic. The \glspl{fly} ortholog of BMP2/4}
\newacronym{arm}{arm}{Armadillo. The \glspl{fly} ortholog of \bcat}
\newacronym{mad}{MAD}{Mothers Against DPP. The \glspl{fly} ortholog of the rSmads}
\newacronym{g1}{G1}{Growth phase 1. The phase of the cell cycle in which
cells have normal diploid (2N) DNA content.}
\newacronym{g2}{G2}{Growth phase 2. The phase of the cell cycle in which
cells have twice-normal (4N) DNA content.}
\newacronym{rsmad}{rSmad}{receptor-Smad}
\newacronym{ismad}{iSmad}{inhibitory-Smad. Comprises Smad6/7}
\newacronym{bsmad}{bSmad}{BMP-specific rSmad. Comprises Smad1/5/8}
\newacronym{tsmad}{tSmad}{\tgf-specific rSmad. Comprises Smad2/3}
\newacronym{rrna}{rRNA}{ribosomal RNA. E.g. 18S rRNA used in qPCR controls}
\newacronym{qpcr}{qPCR}{quantitative PCR. Method for measuring relative RNA abundance}
\newacronym{sirna}{siRNA}{small interfering RNA.
Short RNAs (22-24 bases) used to reduce a target
RNA abundance via the cellular RNA-interference machinery}
\newacronym{mrna}{mRNA}{messenger RNA}
\newacronym{ip}{IP}{Immunopreciptiation. A standard biochemical technique in which an antibody is used to capture a target protein}
\newacronym{coip}{co-IP}{co-Immunopreciptiation. An IP, except that proteins different from the original target are then assayed. If a protein can co-IP with another protein, this is taken as evidence that they physically interact}
%\newacronym{bio}{BIO}{6-bromoindirubin-3'-oxime. An ATP analog that inhibits \gsk\ with decent specificity}
\newacronym{I}{$I$}{Mathematical symbol representing an image}
\newacronym{F}{$F$}{Mathematical symbol representing a foreground fluorescence layer in an image}
\newacronym{B}{$B$}{Mathematical symbol representing a background fluorescence layer in an image}
\newacronym{D}{$D$}{Mathematical symbol representing the baseline detector value in a fluorescence image}
\newacronym{S}{$S$}{Mathematical symbol representing the shading term in a fluorescence image}
\newacronym{sigma}{s.d.}{ The standard deviation of a set of values}
\newacronym{cv}{$cv$}{ The coefficient of variation. Defined as standard deviation over the mean}
\newacronym{tgfbr}{TGFBR1-3}{TGFB receptors, types 1 through 3}
\newacronym{bmpr}{BMPR1/2}{BMP receptors, types 1 and 2}
\newacronym{acvr}{ACVR1/2}{Activin A receptors, types 1 and 2}
\newacronym{gpcr}{GPCR}{G-protein coupled receptor. 7-pass transmembrane
receptors that signal through hetero-trimeric G-proteins}
\newacronym{lrp}{LRP5/6}{Low-density lipoprotein receptor-related protein 5 and 6.
Wnt ligand co-receptors}
\newacronym{dkk}{DKK1}{Dikkopf-1. An extracellular Wnt antagonist}
\newacronym{rspo}{RSPO1}{R-spondin 1. An extracellular Wnt co-factor}
\newacronym{lgr}{LGR4/5}{Leucine-rich repeat-containing G-protein coupled receptors
4 and 5. RSPO1 receptors and Wnt co-receptors}
\newacronym{tcf}{TCF/Lef}{T-cell factor/Lymphoid enhancer-binding factor. Family of
\bcat\ transcriptional co-factors}
\newacronym{ror}{ROR1/2}{Receptor tyrosine kinase-like orphan receptors 1 and 2.
Receptors of non-canonical Wnt5A}
\newacronym{ec50}{EC$_{50}$}{Half-maximal effective concentration.}
%\newacronym{}{}{}
%\newacronym{}{}{}
%\newacronym{}{}{}
%\newacronym{}{}{}
%\newacronym{}{}{}
\glsunsetall % Makes it so that first appearance of acroynyms are not expanded.