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gallont.obo
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gallont.obo
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format-version: 1.2
data-version: releases/2024-04-19
subsetdef: abnormal_slim ""
subsetdef: absent_slim ""
subsetdef: Angiosperm ""
subsetdef: Arabidopsis ""
subsetdef: attribute_slim ""
subsetdef: cell_quality ""
subsetdef: Citrus ""
subsetdef: CL ""
subsetdef: disposition_slim ""
subsetdef: goslim_agr ""
subsetdef: goslim_candida ""
subsetdef: goslim_chembl ""
subsetdef: goslim_drosophila ""
subsetdef: goslim_flybase_ribbon ""
subsetdef: goslim_generic ""
subsetdef: goslim_metagenomics ""
subsetdef: goslim_mouse ""
subsetdef: goslim_pir ""
subsetdef: goslim_plant ""
subsetdef: goslim_pombe ""
subsetdef: goslim_prokaryote ""
subsetdef: goslim_yeast ""
subsetdef: Gymnosperms ""
subsetdef: hpo_slim ""
subsetdef: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension ""
subsetdef: http://purl.obolibrary.org/obo/valid_for_go_gp2term ""
subsetdef: http://purl.obolibrary.org/obo/valid_for_go_ontology ""
subsetdef: http://purl.obolibrary.org/obo/valid_for_gocam ""
subsetdef: Maize ""
subsetdef: mpath_slim ""
subsetdef: Musa ""
subsetdef: Poaceae ""
subsetdef: Potato ""
subsetdef: Pteridophytes ""
subsetdef: reference ""
subsetdef: relational_slim ""
subsetdef: Rice ""
subsetdef: ro-eco ""
subsetdef: RO:0002259 ""
subsetdef: scalar_slim ""
subsetdef: Tomato ""
subsetdef: TraitNet ""
subsetdef: value_slim ""
synonymtypedef: blast_name ""
synonymtypedef: common_name ""
synonymtypedef: equivalent_name ""
synonymtypedef: genbank_common_name ""
synonymtypedef: German ""
synonymtypedef: in_part ""
synonymtypedef: Japanese ""
synonymtypedef: OMO:0003003 ""
synonymtypedef: OMO:0003004 ""
synonymtypedef: Spanish ""
synonymtypedef: synonym ""
ontology: gallont
property_value: http://purl.org/dc/terms/description "Ontology of plant gall phenotypes. Plant galls are novel plant structures, generated by plants in response to biotic stressors. This ontology is used to annotate gall phenotypes (e.g., their colors, textures, sizes, locations on the plant) in a semantic way, in order to facilitate discoveries about the genetic and physiologic mechanisms responsible for such phenotypes. The ontology can also be used as a controlled vocabulary for natural language descriptions of plant galls." xsd:string
property_value: http://purl.org/dc/terms/license https://creativecommons.org/publicdomain/zero/1.0/
property_value: http://purl.org/dc/terms/title "Plant Gall Ontology" xsd:string
property_value: owl:versionInfo "2024-04-19" xsd:string
[Term]
id: BFO:0000001
name: entity
property_value: BFO:0000179 "entity" xsd:string
property_value: BFO:0000180 "Entity" xsd:string
property_value: IAO:0000112 "Julius Caesar" xsd:string
property_value: IAO:0000112 "the Second World War" xsd:string
property_value: IAO:0000112 "Verdi’s Requiem" xsd:string
property_value: IAO:0000112 "your body mass index" xsd:string
property_value: IAO:0000116 "BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81" xsd:string
property_value: IAO:0000116 "Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000004", comment="per discussion with Barry Smith", seeAlso="http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf"}
property_value: IAO:0000600 "An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/001-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl
[Term]
id: BFO:0000002
name: continuant
def: "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts." []
disjoint_from: BFO:0000003 ! occurrent
relationship: part_of BFO:0000002 {all_only="true"} ! continuant
[Term]
id: BFO:0000003
name: occurrent
def: "An entity that has temporal parts and that happens, unfolds or develops through time." []
is_a: BFO:0000001 ! entity
relationship: part_of BFO:0000003 {all_only="true"} ! occurrent
property_value: BFO:0000179 "occurrent" xsd:string
property_value: BFO:0000180 "Occurrent" xsd:string
property_value: IAO:0000116 "BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region" xsd:string
property_value: IAO:0000116 "BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players." xsd:string
property_value: IAO:0000116 "Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process." xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000006", comment="per discussion with Barry Smith"}
property_value: IAO:0000116 "Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame." xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000012"}
property_value: IAO:0000600 "An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/077-002"}
property_value: IAO:0000601 "b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/079-001"}
property_value: IAO:0000601 "Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/108-001"}
property_value: IAO:0000602 "(forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/108-001"}
property_value: IAO:0000602 "(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/079-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl
[Term]
id: BFO:0000004
name: independent continuant
def: "b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])" []
comment: A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.
is_a: BFO:0000002 ! continuant
disjoint_from: BFO:0000020 ! characteristic
relationship: part_of BFO:0000004 {all_only="true"} ! independent continuant
[Term]
id: BFO:0000008
name: temporal region
is_a: BFO:0000003 ! occurrent
property_value: BFO:0000179 "t-region" xsd:string
property_value: BFO:0000180 "TemporalRegion" xsd:string
property_value: IAO:0000116 "Temporal region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the mereological sum of a temporal instant and a temporal interval that doesn't overlap the instant. In this case the resultant temporal region is neither 0-dimensional nor 1-dimensional" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000003", comment="per discussion with Barry Smith"}
property_value: IAO:0000600 "A temporal region is an occurrent entity that is part of time as defined relative to some reference frame. (axiom label in BFO2 Reference: [100-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/100-001"}
property_value: IAO:0000601 "All parts of temporal regions are temporal regions. (axiom label in BFO2 Reference: [101-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/101-001"}
property_value: IAO:0000601 "Every temporal region t is such that t occupies_temporal_region t. (axiom label in BFO2 Reference: [119-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/119-002"}
property_value: IAO:0000602 "(forall (r) (if (TemporalRegion r) (occupiesTemporalRegion r r))) // axiom label in BFO2 CLIF: [119-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/119-002"}
property_value: IAO:0000602 "(forall (x y) (if (and (TemporalRegion x) (occurrentPartOf y x)) (TemporalRegion y))) // axiom label in BFO2 CLIF: [101-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/101-001"}
property_value: IAO:0000602 "(forall (x) (if (TemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [100-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/100-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl
[Term]
id: BFO:0000015
name: process
def: "p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])" []
comment: An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.
is_a: BFO:0000003 ! occurrent
relationship: part_of BFO:0000015 {all_only="true"} ! process
[Term]
id: BFO:0000016
name: disposition
is_a: BFO:0000017 ! realizable entity
disjoint_from: BFO:0000023 ! role
[Term]
id: BFO:0000017
name: realizable
name: realizable entity
def: "A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances." []
is_a: BFO:0000020 ! characteristic
disjoint_from: BFO:0000019 ! quality
relationship: part_of BFO:0000017 {all_only="true"} ! realizable entity
[Term]
id: BFO:0000019
name: quality
is_a: BFO:0000020 ! characteristic
relationship: part_of BFO:0000019 {all_only="true"} ! quality
[Term]
id: BFO:0000020
name: characteristic
name: specifically dependent continuant
def: "b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])" []
comment: A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.
is_a: BFO:0000002 ! continuant
relationship: has_part BFO:0000020 {all_only="true"} ! characteristic
relationship: part_of BFO:0000020 {all_only="true"} ! characteristic
property_value: seeAlso "https://github.com/OBOFoundry/COB/issues/65" xsd:string
property_value: seeAlso "https://github.com/oborel/obo-relations/pull/284" xsd:string
[Term]
id: BFO:0000023
name: role
def: "A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts." []
is_a: BFO:0000017 ! realizable entity
[Term]
id: BFO:0000034
name: function
is_a: BFO:0000016 ! disposition
[Term]
id: BFO:0000038
name: one-dimensional temporal region
is_a: BFO:0000008 ! temporal region
property_value: BFO:0000179 "1d-t-region" xsd:string
property_value: BFO:0000180 "OneDimensionalTemporalRegion" xsd:string
property_value: IAO:0000112 "the temporal region during which a process occurs." xsd:string
property_value: IAO:0000116 "BFO 2 Reference: A temporal interval is a special kind of one-dimensional temporal region, namely one that is self-connected (is without gaps or breaks)." xsd:string
property_value: IAO:0000600 "A one-dimensional temporal region is a temporal region that is extended. (axiom label in BFO2 Reference: [103-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/103-001"}
property_value: IAO:0000602 "(forall (x) (if (OneDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [103-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/103-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl
[Term]
id: BFO:0000040
name: material entity
def: "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time." []
is_a: BFO:0000004 ! independent continuant
[Term]
id: CARO:0000005
name: anatomical space
def: "Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures." []
[Term]
id: CARO:0000030
name: asexual organism
is_a: OBI:0100026 ! organism
[Term]
id: CARO:0000048
name: gonochoristic organism
is_a: OBI:0100026 ! organism
[Term]
id: ENVO:03000096
name: season
is_a: BFO:0000038 ! one-dimensional temporal region
[Term]
id: FLOPO:0900042
name: succulent
def: "A gall trait in which the gall parenchyma is juicy, as in the tissue of some fruits (for example grapes, starfruit)." []
is_a: GALLONT:0000007 ! internal quality
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/source https://lccn.loc.gov/2011488555
property_value: seeAlso https://www.inaturalist.org/observations/81385187
[Term]
id: GALLONT:0000001
name: DEPRECATED plant gall
comment: Updated the class definition to reflect that this structure is a response to biotic stress
property_value: seeAlso GALLONT:0000025
is_obsolete: true
[Term]
id: GALLONT:0000002
name: emergence hole
def: "An anatomical space that is an opening through which a gall-inhabiting organism has emerged." []
is_a: PO:0025117 ! plant anatomical space
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-06-19T19:43:46Z" xsd:string
property_value: seeAlso https://www.inaturalist.org/observations/33275700
[Term]
id: GALLONT:0000003
name: plant gall cavity
def: "A plant anatomical space that is located inside a gall." []
is_a: PO:0025117 ! plant anatomical space
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-06-19T19:44:42Z" xsd:string
property_value: seeAlso https://www.inaturalist.org/observations/117192961
[Term]
id: GALLONT:0000004
name: kapéllo
def: "A gall structure that is attractive to another organism, usually ants, and which facilitates dispersal of the gall" []
is_a: PO:0025496 ! multi-tissue plant structure
relationship: part_of GALLONT:0000025 ! plant gall
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-06-22T01:51:19Z" xsd:string
property_value: seeAlso https://www.inaturalist.org/observations/61878883
[Term]
id: GALLONT:0000005
name: larval chamber
def: "A gall structure wherein the gall inducer and/or its associates resides and which includes a portion of nutritive tissue." []
is_a: PO:0025498 ! cardinal part of multi-tissue plant structure
relationship: has_part GALLONT:0000040 ! nutritive tissue
relationship: has_part GALLONT:0000041 ! larval cavity
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-06-22T01:54:05Z" xsd:string
property_value: seeAlso https://www.inaturalist.org/observations/139401882
[Term]
id: GALLONT:0000006
name: detached chamber
def: "A larval chamber that is detached from the plant but enclosed in a cavity." []
is_a: GALLONT:0000005 ! larval chamber
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-06-22T02:01:48Z" xsd:string
property_value: seeAlso https://www.inaturalist.org/observations/117192961
[Term]
id: GALLONT:0000007
name: internal quality
def: "A quality that inheres in the portion of a gall that is internal." []
is_a: PATO:0000051 ! morphology
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-06-23T21:16:13Z" xsd:string
[Term]
id: GALLONT:0000008
name: filamentous
def: "A gall trait in which a larval chamber is suspended medially in the parenchyma by radiating plant fibers inside a largely hollow chamber." []
is_a: GALLONT:0000007 ! internal quality
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-06-24T01:32:39Z" xsd:string
property_value: seeAlso https://www.inaturalist.org/observations/168120575
[Term]
id: GALLONT:0000009
name: monothalamous
def: "An internal gall trait in which a gall has a single larval chamber for the gall-inducing insect." []
is_a: GALLONT:0000007 ! internal quality
disjoint_from: GALLONT:0000011 ! polythalamous
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-06-24T01:37:35Z" xsd:string
property_value: IAO:0000118 "single chambered" xsd:string
property_value: IAO:0000118 "unilocular" xsd:string
[Term]
id: GALLONT:0000010
name: pithy
def: "An internal gall trait in which the tissue is reminiscent of pith, the relatively soft tissue at the center of a shoot axis." []
is_a: GALLONT:0000007 ! internal quality
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-06-24T01:41:48Z" xsd:string
property_value: seeAlso https://www.inaturalist.org/observations/138512674
[Term]
id: GALLONT:0000011
name: polythalamous
def: "An internal gall trait in which more than one larval chamber is present for the inducer species." []
is_a: GALLONT:0000007 ! internal quality
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-06-24T01:44:34Z" xsd:string
property_value: IAO:0000118 "multi-celled" xsd:string
property_value: IAO:0000118 "multichambered" xsd:string
property_value: IAO:0000118 "multilocular" xsd:string
property_value: seeAlso https://www.inaturalist.org/observations/33275700
[Term]
id: GALLONT:0000012
name: solid
def: "An internal gall trait in which the gall lacks macroscopic anatomical space(s) that is/are not the larval chamber." []
is_a: GALLONT:0000007 ! internal quality
disjoint_from: PATO:0002078 ! hollow
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-06-24T01:58:04Z" xsd:string
property_value: seeAlso https://www.inaturalist.org/observations/138512674
[Term]
id: GALLONT:0000013
name: nectarous
def: "A gall quality in which a gall has nectaries present." []
is_a: PATO:0000051 ! morphology
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-06-24T02:13:52Z" xsd:string
property_value: seeAlso https://www.inaturalist.org/observations/47182384
[Term]
id: GALLONT:0000014
name: caneliform
def: "A shape quality inhering in a bearer by virtue of the bearer's having a shape resembling a canelé, a French pastry." []
is_a: PATO:0002266 ! 3-D shape
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-06-25T00:21:14Z" xsd:string
property_value: http://purl.org/dc/terms/source https://en.wikipedia.org/w/index.php?title=Canel%C3%A9&oldid=1160295465
[Term]
id: GALLONT:0000015
name: cupuliform
def: "A shape inhering in a bearer by virtue of the bearer resembling a cup, with a depression and rim-like edge apically." []
is_a: PATO:0002266 ! 3-D shape
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-06-25T00:30:40Z" xsd:string
property_value: http://purl.org/dc/terms/source https://lccn.loc.gov/2011488555
property_value: IAO:0000118 "cup-like" xsd:string
[Term]
id: GALLONT:0000016
name: echinoform
def: "A shape trait in which a gall has radiating, spine-like processes that resemble the spines of a sea urchin (cf. Cidaridae)." []
is_a: PATO:0002266 ! 3-D shape
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-06-25T00:38:13Z" xsd:string
property_value: seeAlso https://www.inaturalist.org/observations/8139
[Term]
id: GALLONT:0000017
name: infundibuliform
def: "A shape quality inhering in a bearer by virtue of the bearer being shaped like a funnel, abruptly widening from a narrow cylindrical part, to a wider distal part." []
is_a: PATO:0000052 ! shape
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-06-25T00:47:37Z" xsd:string
property_value: http://purl.org/dc/terms/source https://lccn.loc.gov/2011488555
property_value: seeAlso https://www.inaturalist.org/observations/105016514
[Term]
id: GALLONT:0000018
name: lenticular
def: "A shape quality inhering in a bearer by virtue of the bearer's being shaped like a lentil, with convex upper and lower surfaces." []
is_a: PATO:0001865 ! spheroid
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-06-25T00:52:58Z" xsd:string
property_value: http://purl.org/dc/terms/source lenticular
property_value: seeAlso https://www.inaturalist.org/observations/30408125
property_value: seeAlso PATO:0000409
[Term]
id: GALLONT:0000019
name: semiterete
def: "A shape quality inhering in a bearer by virtue of the bearer's appearing semicircular in cross-section, flat on one side, rounded on the other." []
is_a: PATO:0000052 ! shape
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-06-25T02:03:26Z" xsd:string
property_value: http://purl.org/dc/terms/source https://lccn.loc.gov/2011488555
[Term]
id: GALLONT:0000020
name: confluent
def: "A spatial pattern (or gall arrangement) in which adjacent objects (galls) are positioned in such a way that each gall cannot readily be distinguished as an individual." []
is_a: PATO:0000060 ! spatial pattern
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-06-25T19:44:11Z" xsd:string
property_value: seeAlso https://www.inaturalist.org/observations/48455940
[Term]
id: GALLONT:0000021
name: linear color gradient
def: "A color pattern inhering in a bearer by virtue of bearer's being marked with one hue or degree of saturation near one pole and a different hue or degree of saturation at the opposite pole and a color gradient between the two poles." []
is_a: PATO:0001533 ! multi-colored
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-06-25T20:11:58Z" xsd:string
[Term]
id: GALLONT:0000022
name: corrugated
def: "A texture quality in which the surface is marked by alternating parallel ridges and grooves." []
is_a: PATO:0000150 ! texture
disjoint_from: PATO:0002442 ! unornamented
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-06-26T21:21:38Z" xsd:string
property_value: http://purl.org/dc/terms/source PORO:0000234
property_value: IAO:0000118 "ribbed" xsd:string
property_value: seeAlso https://www.inaturalist.org/observations/46514828
[Term]
id: GALLONT:0000023
name: crackled
def: "A texture quality in which the surface is marked by a network of cracks, as in craquelure." []
is_a: PATO:0000700 ! rough
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-06-26T21:25:58Z" xsd:string
property_value: http://purl.org/dc/terms/source https://en.wikipedia.org/w/index.php?title=Craquelure&oldid=1117468584
property_value: seeAlso https://www.inaturalist.org/observations/61507036
[Term]
id: GALLONT:0000024
name: dimpled
def: "A surface feature shape in which a surface has a dimple, a depression or indentation on a surface." []
is_a: PATO:0001925 ! surface feature shape
disjoint_from: PATO:0002442 ! unornamented
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-06-26T21:30:22Z" xsd:string
property_value: http://purl.org/dc/terms/source https://dictionary.cambridge.org/us/dictionary/english/dimpled
property_value: seeAlso https://www.inaturalist.org/observations/47442195
[Term]
id: GALLONT:0000025
name: plant gall
def: "A multi-tissue plant structure (PO:0025496) that develops in response to a biotic stress (PSO:0000004)." []
is_a: PO:0025496 ! multi-tissue plant structure
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2024-03-24T21:38:29Z" xsd:string
property_value: seeAlso https://www.inaturalist.org/observations/62135900
[Term]
id: GALLONT:0000026
name: faceted
def: "A texture quality in which a surface is covered or partially by with facets." []
is_a: PATO:0000150 ! texture
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-06-26T21:35:23Z" xsd:string
property_value: seeAlso https://www.inaturalist.org/observations/33275277
[Term]
id: GALLONT:0000027
name: moss-like
def: "A texture quality in which a surface has the appearance and/or consistency of moss, especially those species in Polytrichaceae (Bryophyta)." []
is_a: PATO:0000150 ! texture
disjoint_from: PATO:0000701 ! smooth
disjoint_from: PATO:0002442 ! unornamented
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-06-26T21:41:40Z" xsd:string
property_value: IAO:0000118 "mossy" xsd:string
property_value: seeAlso https://www.inaturalist.org/observations/134718736
[Term]
id: GALLONT:0000028
name: papery
def: "A texture quality in which a surface has the consistency and thickness of a paper bag (thin and dry)." []
is_a: PATO:0000150 ! texture
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-06-26T21:48:32Z" xsd:string
property_value: seeAlso https://www.inaturalist.org/observations/62933356
[Term]
id: GALLONT:0000029
name: felt-like
def: "A quality inhering in a bearer by virtue of the bearer's being covered in short, dense, fine hairs, which give the appearance of felt." []
is_a: PATO:0000454 ! hairy
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-06-26T22:01:09Z" xsd:string
property_value: IAO:0000118 "felted" xsd:string
property_value: seeAlso https://www.inaturalist.org/observations/54851258
[Term]
id: GALLONT:0000030
name: pruinose
def: "A coating quality in which a surface is covered in a whitish, powdery film or dust." []
is_a: PATO:0002012 ! coating
disjoint_from: PATO:0002442 ! unornamented
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-06-27T00:31:53Z" xsd:string
property_value: http://purl.org/dc/terms/source https://en.wikipedia.org/w/index.php?title=Pruinescence&oldid=1068715610
property_value: seeAlso https://www.inaturalist.org/observations/64626028
[Term]
id: GALLONT:0000031
name: semideciduous
def: "A shedability quality in which a part can readily be detached from its location but it normally (in nature) stays attached; detachable." []
is_a: PATO:0001729 ! shedability
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-06-27T01:16:14Z" xsd:string
property_value: seeAlso https://www.inaturalist.org/observations/167537899
[Term]
id: GALLONT:0000032
name: brittle
def: "A structural quality inhering in an object by virtue of the object's susceptibility to breaks, without significant deformation (strain) when subjected to stress." []
is_a: PATO:0001543 ! flexibility
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-06-27T01:41:01Z" xsd:string
[Term]
id: GALLONT:0000033
name: DEPRECATED erineum
comment: logic needed to be fixed
property_value: seeAlso GALLONT:0000048
is_obsolete: true
[Term]
id: GALLONT:0000034
name: blister gall
def: "A plant gall that is part of a leaf and which appears as a portion of swollen tissue, similar to a blister." []
is_a: GALLONT:0000025 ! plant gall
relationship: part_of PO:0025034 ! leaf
property_value: http://purl.org/dc/terms/creator http://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-08-01T22:15:28Z" xsd:string
property_value: http://purl.org/dc/terms/source https://lccn.loc.gov/41001073
[Term]
id: GALLONT:0000035
name: bud gall
def: "A plant gall that is located on a bud." []
is_a: GALLONT:0000025 ! plant gall
intersection_of: GALLONT:0000025 ! plant gall
intersection_of: part_of PO:0000055 ! bud
relationship: part_of PO:0000055 ! bud
property_value: http://purl.org/dc/terms/creator http://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-08-01T22:23:57Z" xsd:string
property_value: http://purl.org/dc/terms/source https://lccn.loc.gov/41001073
property_value: seeAlso https://www.inaturalist.org/observations/48455720
[Term]
id: GALLONT:0000036
name: bullet gall
def: "A plant gall that is monothalamous and solid, with a shape reminiscent of a bullet. Gall is usually subspherical or subelliptical in shape." []
is_a: GALLONT:0000025 ! plant gall
intersection_of: GALLONT:0000025 ! plant gall
intersection_of: RO:0000086 GALLONT:0000009 ! has quality monothalamous
intersection_of: RO:0000086 GALLONT:0000012 ! has quality solid
intersection_of: RO:0000086 GALLONT:0000031 ! has quality semideciduous
intersection_of: RO:0000086 PATO:0001865 ! has quality spheroid
relationship: RO:0000086 GALLONT:0000009 ! has quality monothalamous
relationship: RO:0000086 GALLONT:0000012 ! has quality solid
relationship: RO:0000086 GALLONT:0000031 ! has quality semideciduous
relationship: RO:0000086 PATO:0001865 ! has quality spheroid
property_value: http://purl.org/dc/terms/creator http://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-08-01T22:28:40Z" xsd:string
property_value: http://purl.org/dc/terms/source https://lccn.loc.gov/41001073
property_value: seeAlso https://www.inaturalist.org/observations/58434690
[Term]
id: GALLONT:0000037
name: roly-poly gall
def: "A plant gall that has a detached larval chamber capable of rolling around a hollow chamber located inside the gall." []
is_a: GALLONT:0000025 ! plant gall
intersection_of: GALLONT:0000025 ! plant gall
intersection_of: has_part GALLONT:0000006 ! detached chamber
intersection_of: RO:0000086 PATO:0002078 ! has quality hollow
relationship: has_part GALLONT:0000006 ! detached chamber
relationship: RO:0000086 PATO:0002078 ! has quality hollow
property_value: http://purl.org/dc/terms/creator http://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-08-02T01:35:34Z" xsd:string
property_value: http://purl.org/dc/terms/source https://lccn.loc.gov/41001073
property_value: seeAlso https://www.inaturalist.org/observations/117192961
[Term]
id: GALLONT:0000038
name: rosette gall
def: "A plant gall that is located on a bud and which consists of layers of scale leaves or similar phyllomes that surround the inducer's chamber." []
is_a: GALLONT:0000035 ! bud gall
is_a: UBERON:0001062 ! anatomical entity
relationship: has_part PO:0006001 ! phyllome
property_value: http://purl.org/dc/terms/creator http://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-08-02T01:43:13Z" xsd:string
property_value: http://purl.org/dc/terms/source https://lccn.loc.gov/41001073
property_value: IAO:0000118 "bunch gall" xsd:string
property_value: seeAlso https://www.inaturalist.org/observations/33495996
[Term]
id: GALLONT:0000039
name: Acraspis erinacei (agamic)
is_a: CARO:0000030 ! asexual organism
is_a: NCBITaxon:2714064 ! Acraspis erinacei
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2024-03-25T19:27:00Z" xsd:dateTime
[Term]
id: GALLONT:0000040
name: nutritive tissue
comment: A portion of plant tissue that is fed upon by a gall inhabitant.
is_a: PO:0009007 ! portion of plant tissue
relationship: part_of GALLONT:0000005 ! larval chamber
property_value: http://purl.org/dc/terms/creator http://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2024-01-19T02:22:00Z" xsd:string
property_value: seeAlso https://doi.org/10.3390%2Finsects12100850
[Term]
id: GALLONT:0000041
name: larval cavity
def: "A cavity that is occupied by one or more gall inhabitants." []
is_a: GALLONT:0000003 ! plant gall cavity
property_value: http://purl.org/dc/terms/creator http://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2024-01-19T02:27:40Z" xsd:string
[Term]
id: GALLONT:0000042
name: Quercus sect. Quercus
is_a: NCBITaxon:3511 ! Quercus
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2024-03-25T01:26:41Z" xsd:string
[Term]
id: GALLONT:0000043
name: Disholcaspis quercusglobulus (sexgen)
is_a: CARO:0000048 ! gonochoristic organism
is_a: NCBITaxon:1540852 ! Disholcaspis quercusglobulus
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2024-03-25T01:28:09Z" xsd:string
[Term]
id: GALLONT:0000044
name: Disholcaspis quercusglobulus (agamic)
is_a: CARO:0000030 ! asexual organism
is_a: NCBITaxon:1540852 ! Disholcaspis quercusglobulus
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2024-03-25T01:28:48Z" xsd:string
[Term]
id: GALLONT:0000045
name: Acraspis erinacei (sexgen)
is_a: CARO:0000048 ! gonochoristic organism
is_a: NCBITaxon:2714064 ! Acraspis erinacei
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2024-03-25T19:27:17Z" xsd:dateTime
[Term]
id: GALLONT:0000046
name: Aceria triplacis
is_a: NCBITaxon:109362 ! Aceria
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2024-03-25T19:39:17Z" xsd:dateTime
[Term]
id: GALLONT:0000047
name: Acraspis gemula
is_a: NCBITaxon:1934078 ! Acraspis
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2024-03-25T19:40:19Z" xsd:dateTime
[Term]
id: GALLONT:0000048
name: erineum
def: "A plant gall that is induced by mites (Acariformes) on leaves and which consists of an area of leaf epidermis that has increased hairiness." []
is_a: GALLONT:0000050 ! zoocecidium
is_a: UBERON:0001062 ! anatomical entity
intersection_of: GALLONT:0000025 ! plant gall
intersection_of: GALLONT:0000059 NCBITaxon:6946 ! induced by Acariformes
intersection_of: has_part PO:0006504 ! leaf trichome
relationship: GALLONT:0000059 NCBITaxon:6946 ! induced by Acariformes
relationship: has_part PO:0006504 ! leaf trichome
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2023-08-01T21:56:59Z" xsd:string
[Term]
id: GALLONT:0000049
name: plant gall aggregate
name: plant gall cluster
def: "A multi-tissue plant structure (PO:0025496) that has as parts multiple individual plant galls (GALLONT:0000025) in ane aggregation." []
is_a: PO:0025496 ! multi-tissue plant structure
relationship: has_part GALLONT:0000025 ! plant gall
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2024-04-11T14:32:57Z" xsd:dateTime
[Term]
id: GALLONT:0000050
name: zoocecidium
def: "A plant gall that is induced by an animal" []
is_a: GALLONT:0000025 ! plant gall
is_a: OBI:0100026 ! organism
intersection_of: GALLONT:0000025 ! plant gall
intersection_of: GALLONT:0000059 NCBITaxon:33208 ! induced by Metazoa
relationship: GALLONT:0000059 NCBITaxon:33208 ! induced by Metazoa
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2024-04-15T13:33:50Z" xsd:dateTime
property_value: http://purl.org/dc/terms/source 978-94-017-6230-4:9
[Term]
id: GALLONT:0000051
name: plant gall abscission zone
def: "An abscission zone (PO:0000146) that is part of a plant gall." []
is_a: PO:0000146 ! abscission zone
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2024-04-18T13:34:27Z" xsd:dateTime
property_value: seeAlso https://www.inaturalist.org/observations/129032167
[Term]
id: GALLONT:0000053
name: plant gall dehiscence zone
def: "A dehiscence zone that is part of a plant gall. This zone corresponds to the site of rupture in a plant gall." []
is_a: PO:0025092 ! dehiscence zone
property_value: http://purl.org/dc/terms/creator https://orcid.org/0000-0002-2119-4663
property_value: http://purl.org/dc/terms/date "2024-04-18T14:16:58Z" xsd:dateTime
property_value: seeAlso https://www.inaturalist.org/observations/179039203
[Term]
id: GO:0003674
name: gene product or complex activity
name: molecular_function
namespace: molecular_function
alt_id: GO:0005554
def: "A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs." [GOC:pdt]
comment: Note that, in addition to forming the root of the molecular function ontology, this term is recommended for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex.
comment: Note that, in addition to forming the root of the molecular function ontology, this term is recommended for use for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex.
comment: This is the same as GO molecular function
subset: goslim_candida
subset: goslim_chembl
subset: goslim_metagenomics
subset: goslim_pir
subset: goslim_plant
subset: goslim_yeast
synonym: "molecular function" EXACT []
is_a: BFO:0000015 ! process
disjoint_from: GO:0008150 ! biological process
[Term]
id: GO:0003824
name: catalytic activity
namespace: molecular_function
def: "Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic." [GOC:vw, ISBN:0198506732]
subset: goslim_agr
subset: goslim_chembl
subset: goslim_flybase_ribbon
subset: goslim_generic
subset: goslim_metagenomics
subset: goslim_pir
subset: goslim_plant
synonym: "enzyme activity" EXACT [GOC:dph, GOC:tb]
xref: Wikipedia:Enzyme
is_a: GO:0003674 ! molecular_function
[Term]
id: GO:0008150
name: biological process
name: biological_process
namespace: biological_process
alt_id: GO:0000004
alt_id: GO:0007582
alt_id: GO:0044699
def: "A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence." [GOC:pdt]
def: "A process that emerges from two or more causally-connected macromolecular activities and has evolved to achieve a biological objective." []
comment: A biological process is an evolved process
comment: Note that, in addition to forming the root of the biological process ontology, this term is recommended for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this.
comment: Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this.
subset: goslim_candida
subset: goslim_chembl
subset: goslim_metagenomics
subset: goslim_pir
subset: goslim_plant
subset: goslim_pombe
subset: goslim_yeast
synonym: "biological process" EXACT []
synonym: "physiological process" EXACT []
synonym: "single organism process" RELATED []
synonym: "single-organism process" RELATED []
xref: Wikipedia:Biological_process
is_a: BFO:0000015 ! process
relationship: has_part GO:0003674 ! molecular_function
property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/24968" xsd:anyURI
created_by: jl
creation_date: 2012-09-19T15:05:24Z
[Term]
id: GO:0016301
name: kinase activity
namespace: molecular_function
def: "Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule." [ISBN:0198506732]
comment: Note that this term encompasses all activities that transfer a single phosphate group; although ATP is by far the most common phosphate donor, reactions using other phosphate donors are included in this term.
subset: goslim_chembl
subset: goslim_drosophila
subset: goslim_metagenomics
subset: goslim_plant
subset: goslim_yeast
synonym: "phosphokinase activity" EXACT []
xref: Reactome:R-HSA-6788855 "FN3KRP phosphorylates PsiAm, RibAm"
xref: Reactome:R-HSA-6788867 "FN3K phosphorylates ketosamines"
is_a: GO:0016772 ! transferase activity, transferring phosphorus-containing groups
[Term]
id: GO:0016740
name: transferase activity
namespace: molecular_function
def: "Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2." [ISBN:0198506732]
subset: goslim_candida
subset: goslim_chembl
subset: goslim_drosophila
subset: goslim_generic
subset: goslim_metagenomics
subset: goslim_mouse
subset: goslim_pir
subset: goslim_plant
subset: goslim_prokaryote
subset: goslim_yeast
xref: EC:2.-.-.-
xref: Reactome:R-HSA-1483089 "PE is converted to PS by PTDSS2"
xref: Reactome:R-HSA-1483186 "PC is converted to PS by PTDSS1"
xref: Reactome:R-HSA-5668414 "TRAF2 ubiquitinates cIAP1,2 in cIAP1,2:TRAF1:TRAF2:TRAF3:NIK"
xref: Reactome:R-HSA-8868783 "TSR3 transfers aminocarboxypropyl group from S-adenosylmethionine to N(1)-methylpseudouridine-1248 of 18SE rRNA yielding N(1)-methyl-N(3)-aminocarboxypropylpseudouridine-1248"
is_a: GO:0003824 ! catalytic activity
[Term]
id: GO:0016772
name: transferase activity, transferring phosphorus-containing groups
namespace: molecular_function
def: "Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor)." [GOC:jl, ISBN:0198506732]
comment: Note that this term encompasses all kinase activities, as well as activities that transfer other phosphorus-containing groups such as diphosphate or nucleotides.
subset: goslim_chembl
xref: EC:2.7.-.-
is_a: GO:0016740 ! transferase activity
[Term]
id: IAO:0000078
name: curation status specification
def: "The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value." []
property_value: IAO:0000111 "curation status specification" xsd:string
property_value: IAO:0000114 IAO:0000125
property_value: IAO:0000116 "Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting)" xsd:string
property_value: IAO:0000117 "PERSON:Bill Bug" xsd:string
property_value: IAO:0000119 "GROUP:OBI:<http://purl.obolibrary.org/obo/obi>" xsd:string
property_value: IAO:0000119 "OBI_0000266" xsd:string
[Term]
id: NCBITaxon:1
name: root
namespace: ncbi_taxonomy
synonym: "all" RELATED synonym []
xref: GC_ID:1
xref: PMID:30365038
xref: PMID:32761142
is_a: OBI:0100026 ! organism
[Term]
id: NCBITaxon:109362
name: Aceria
is_a: NCBITaxon:70320 ! Eriophyidae
[Term]
id: NCBITaxon:1206794
name: Ecdysozoa
namespace: ncbi_taxonomy
xref: GC_ID:1
is_a: NCBITaxon:33317 ! Protostomia
property_value: has_rank NCBITaxon:clade
[Term]
id: NCBITaxon:131567
name: cellular organisms
namespace: ncbi_taxonomy
synonym: "biota" RELATED synonym []
xref: GC_ID:1
is_a: NCBITaxon:1 ! root
[Term]
id: NCBITaxon:1389465
name: Disholcaspis
is_a: NCBITaxon:75144 ! Cynipini
[Term]
id: NCBITaxon:1540852
name: Disholcaspis quercusglobulus
is_a: NCBITaxon:1389465 ! Disholcaspis
[Term]
id: NCBITaxon:1934078
name: Acraspis
is_a: NCBITaxon:75144 ! Cynipini
[Term]
id: NCBITaxon:197562
name: Pancrustacea
namespace: ncbi_taxonomy
xref: GC_ID:1
xref: PMID:10874751
xref: PMID:11557979
is_a: NCBITaxon:197563 ! Mandibulata
property_value: has_rank NCBITaxon:clade
[Term]
id: NCBITaxon:197563
name: Mandibulata
namespace: ncbi_taxonomy
synonym: "mandibulates" EXACT OMO:0003003 []
xref: GC_ID:1
xref: PMID:11557979
xref: PMID:9727836
is_a: NCBITaxon:6656 ! Arthropoda
property_value: has_rank NCBITaxon:clade
[Term]
id: NCBITaxon:2714064
name: Acraspis erinacei
is_a: NCBITaxon:1934078 ! Acraspis
[Term]
id: NCBITaxon:2759
name: Eukaryota
namespace: ncbi_taxonomy
synonym: "Eucarya" RELATED synonym []
synonym: "Eucaryotae" RELATED synonym []
synonym: "eucaryotes" EXACT genbank_common_name []
synonym: "Eukarya" RELATED synonym []
synonym: "Eukaryotae" RELATED synonym []
synonym: "eukaryotes" EXACT OMO:0003003 []
synonym: "eukaryotes" EXACT common_name []
synonym: "eukaryotes" RELATED blast_name []
xref: GC_ID:1
xref: PMID:23020233
xref: PMID:30257078
is_a: NCBITaxon:131567 ! cellular organisms
property_value: has_rank NCBITaxon:superkingdom
[Term]
id: NCBITaxon:33090
name: Viridiplantae
namespace: ncbi_taxonomy
synonym: "Chlorobionta" RELATED synonym []
synonym: "Chlorophyta/Embryophyta group" EXACT equivalent_name []
synonym: "chlorophyte/embryophyte group" EXACT equivalent_name []
synonym: "Chloroplastida" RELATED synonym []
synonym: "green plants" EXACT common_name []
synonym: "green plants" EXACT OMO:0003003 []
synonym: "green plants" RELATED blast_name []
xref: GC_ID:1
xref: PMID:16248873
xref: PMID:30257078
is_a: NCBITaxon:2759 ! Eukaryota
property_value: has_rank NCBITaxon:kingdom
[Term]
id: NCBITaxon:33154
name: Opisthokonta
namespace: ncbi_taxonomy
synonym: "Fungi/Metazoa group" RELATED synonym []
synonym: "opisthokonts" RELATED synonym []
xref: GC_ID:1
is_a: NCBITaxon:2759 ! Eukaryota
property_value: has_rank NCBITaxon:clade
[Term]
id: NCBITaxon:33208
name: Metazoa
namespace: ncbi_taxonomy
synonym: "Animalia" RELATED synonym []
synonym: "animals" RELATED blast_name []
synonym: "metazoans" EXACT genbank_common_name []
synonym: "multicellular animals" EXACT OMO:0003003 []
xref: GC_ID:1
is_a: NCBITaxon:33154 ! Opisthokonta
property_value: has_rank NCBITaxon:kingdom
[Term]
id: NCBITaxon:33213
name: Bilateria
namespace: ncbi_taxonomy
xref: GC_ID:1
is_a: NCBITaxon:6072 ! Eumetazoa
property_value: has_rank NCBITaxon:clade
[Term]