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create_graph.py
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create_graph.py
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from rdflib import Graph, RDFS, URIRef
from collections import defaultdict
import json
g = Graph()
g.parse("./oeo/oeo-full.owl")
q_global = g.query("""
SELECT DISTINCT ?s ?o
WHERE { ?s rdfs:subClassOf ?o
filter(!isBlank(?o))
}
""")
q_label = g.query("""
SELECT DISTINCT ?s ?o
WHERE { ?s rdfs:label ?o }
""")
q_definition = g.query("""
SELECT DISTINCT ?s ?o
WHERE { ?s obo:IAO_0000115 ?o }
""")
q_note = g.query("""
SELECT DISTINCT ?s ?o
WHERE { ?s obo:IAO_0000116 ?o }
""")
q_main_description = g.query("""
SELECT ?s ?o
WHERE { ?s dc:description ?o }
""")
classes_name = {}
for row in q_label:
class_name = row.s.split('/')[-1]
classes_name[class_name] = row.o
classes_definitions = defaultdict(list)
for row in q_definition:
class_name = row.s.split('/')[-1]
classes_definitions[class_name].append(row.o)
classes_notes = defaultdict(list)
for row in q_note:
class_name = row.s.split('/')[-1]
classes_notes[class_name].append(row.o)
ontology_description = ''
for row in q_main_description:
if (row.s.split('/')[-1] == ''):
ontology_description = row.o
# Begin prepare data for oeo-viewer. Only need to be executed once per release
graphLinks = []
graphNodes = []
for row in q_global:
source = row.o.split('/')[-1]
target = row.s.split('/')[-1]
#if source in classes_name.keys() and target in classes_name.keys():
graphLinks.append({
"source": source,
"target": target
})
target_found = False
source_found = False
for item in graphNodes:
if item["id"] == target:
target_found = True
if item["id"] == source:
source_found = True
try:
if not target_found:
graphNodes.append({
"id": target,
"name": classes_name[target],
"description": classes_definitions[target],
"editor_note": classes_notes[target]
})
if not source_found:
graphNodes.append({
"id": source,
"name": classes_name[source],
"description": classes_definitions[source],
"editor_note": classes_notes[source]
})
except:
pass
with open('client/source-code/statics/oeo_info.json', 'w') as f:
json.dump({"nodes": graphNodes,
"links": graphLinks}, f)
print('- - - - - - - - - - ')
print('data for oeo-viewer prepared!')