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does this package only suitable for 10x Visium data? #3

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aaadc opened this issue Oct 10, 2022 · 1 comment
Open

does this package only suitable for 10x Visium data? #3

aaadc opened this issue Oct 10, 2022 · 1 comment

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@aaadc
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aaadc commented Oct 10, 2022

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@aerickso
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aerickso commented Oct 10, 2022 •
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Hi @aaadc, thank you for your interest.

We published and validated signals using 10x Visium spatial data. The underpinning dependency, inferCNV (https://github.com/broadinstitute/infercnv) was designed for single cell RNAseq. In principle, any barcoded transcript count data can be input to inferCNV and SpatialInferCNV.

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@aerickso @aaadc