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Error in names(current_args) %in% names(loaded_options) : trying to get slot "options" from an object of a basic class ("list") with no slots #4

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yunbokai opened this issue Oct 12, 2022 · 0 comments

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@yunbokai
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Hi ,
Thanks for your usefull package!
But I got ERROR when I ran
`Userguide_10xBreastCancer_infCNV = infercnv::run(Userguide_10xBreastCancer_infCNV,

  •                                              cutoff=0.1, #(see infercnv::run documentation)
    
  •                                              out_dir="./InferCNVrun_outputs", 
    
  •                                              cluster_by_groups=FALSE, #unsupervised analysis
    
  •                                              HMM = FALSE, 
    
  •                                              denoise=TRUE) #denoising applies noise reduction for the plot`
    

First, I got Error like:

Error in plot_cnv(infercnv_obj, k_obs_groups = k_obs_groups, cluster_by_groups = cluster_by_groups, :
trying to get slot "expr.data" from an object of a basic class ("list") with no slots

Then, I ran the same code again and got Error like:

Error in names(current_args) %in% names(loaded_options) :
trying to get slot "options" from an object of a basic class ("list") with no slots

Can you help me?

Best wishes.

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