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Hi,
When I run pyscenic aucell, I get the error here.
pyscenic.cli.pyscenic - ERROR - A gene signature must have at least one gene.
I really don't know how to do next. I could run successfully for pyscenic grn and pyscenic ctx
However, I was stuck at pyscenic aucell this step. Could you help me figure it out?
Here is all the information:
pyscenic aucell simcre_ctrl.loom simcre_ctrl_reg.csv --output simcre_ctrl_SCENIC.loom --num_workers 20
2022-09-30 23:16:34,077 - pyscenic.cli.pyscenic - INFO - Loading expression matrix.
2022-09-30 23:16:34,808 - pyscenic.cli.pyscenic - INFO - Loading gene signatures.
Create regulons from a dataframe of enriched features.
Additional columns saved: []
2022-09-30 23:16:42,458 - pyscenic.cli.pyscenic - ERROR - A gene signature must have at least one gene.
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I appreciate, thank you so much!
BJ
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Hi,
When I run
pyscenic aucell
, I get the error here.pyscenic.cli.pyscenic - ERROR - A gene signature must have at least one gene.
I really don't know how to do next. I could run successfully for
pyscenic grn
andpyscenic ctx
However, I was stuck at
pyscenic aucell
this step. Could you help me figure it out?Here is all the information:
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