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--------------------- WARNING ---------------------
MSG: passed an array ref which did not contain objects to _setinput
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: Bad input data or less than 2 sequences in ARRAY(0x561294f4c138) !
STACK: Error::throw
STACK: Bio::Root::Root::throw /usr/share/perl5/Bio/Root/Root.pm:449
STACK: Bio::Tools::Run::Alignment::TCoffee::align /usr/share/perl5/Bio/Tools/Run/Alignment/TCoffee.pm:161
STACK: scripts/align_proteins.pl:87
scons: *** [results/aligned_H2A_proteins.fasta] Error 25
scons: building terminated because of errors.
Apologies but irrespective of the likely broken dependency, this set of scripts also relies on an outdated histone gene nomenclature. I hope to revisit this in the future but it will require a major rewrite sorry,
scons: Building targets ...
$ perl '-Ilib-perl5' '-Iscripts' '-MHistoneSequencesDB' '-e' 'HistoneSequencesDB->new("results/sequences")->write_db("results/histones_db.store")'
$ perl '-Ilib-perl5' '-Iscripts' 'scripts/align_proteins.pl' 'results/histones_db.store' 'H2A' 'results/aligned_H2A_proteins.fasta'
--------------------- WARNING ---------------------
MSG: passed an array ref which did not contain objects to _setinput
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: Bad input data or less than 2 sequences in ARRAY(0x561294f4c138) !
STACK: Error::throw
STACK: Bio::Root::Root::throw /usr/share/perl5/Bio/Root/Root.pm:449
STACK: Bio::Tools::Run::Alignment::TCoffee::align /usr/share/perl5/Bio/Tools/Run/Alignment/TCoffee.pm:161
STACK: scripts/align_proteins.pl:87
scons: *** [results/aligned_H2A_proteins.fasta] Error 25
scons: building terminated because of errors.
extractor.log
output-of-data.txt
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