Complete and update the Agroportal submission metamodel 2023 - Part 1

[syphax-bouazzouni]

Goals

• Enrich submission attributes metadata
• Make the validators less permissive
• Keep always the data consistency and coherence

Refrences

• Agroportal metadata curation template
• Agroportal model 2023 sheet

Requirements

Goo development

DataTypes

• Feature: add property data type dsl ontoportal-lirmm/goo#23

Validators

• Refactor: resources validators ontoportal-lirmm/goo#26
• Feature: Implement new validators ontoportal-lirmm/goo#27
  • implement symmetric validator ontoportal-lirmm/goo#18
  • implement superior_equal_to_<property> validator ontoportal-lirmm/goo#19
  • implement inverse_of_<property> validator ontoportal-lirmm/goo#20
  • implement distinct_of_<property> validator ontoportal-lirmm/goo#21
• Feature: Implement instance proc validators ontoportal-lirmm/goo#28

YAML Model schemes

• Feature: add model scheme yml file ontoportal-lirmm/goo#30

On Update callback

• Feature: Add models on update callbacks ontoportal-lirmm/goo#31

Ontologies linked to data development

• Feature: Update ontology submission model 2023 - Part 1 - Update attributes validators and metadata  ontoportal-lirmm/ontologies_linked_data#72

API development

• Create /ontology_metadata endpoint ontoportal-lirmm/ontologies_api#26
• Feature: Update submission_metadata to be adapted to the new submission model  ontoportal-lirmm/ontologies_api#33
• Add in the backend an auto-calculation of the properties filling ratio for an ontology and portal ontoportal-lirmm/ontologies_api#30

UI development

• Merge to master - Release 2.7.0.3 - New UI, Multilingual integration, New metadata mode and docker images  ontoportal-lirmm/bioportal_web_ui#240
• Make a public guide for the portal meta model

[jonquet]

Related to this issue, I realize this is certainly the time to introduce a couple of other properties in the model being candidate at MOD2.1 too.

mod:upperOntology
mod:hasFAIRscore
mod:crossReference

Metrics (will be necessary for O'FAIRE v2)
mod:numberOfReusedTerms
mod:numberOfReusedTermsWithMIREOT
mod:numberOfMappings
mod:numberOfMappingsReusable
mod:numberOfCrossReferences
mod:numberOfCrossReferencesReusable
mod:numberOfObjectsWithLabels
mod:numberOfObjectsWithTextDescription
mod:numberOfObjectsWithFormalDescription
mod:numberOfObjectsWithProvenance

To be completed in @syphax-bouazzouni's metadata document
To be completed in MOD2.1 => https://github.com/FAIR-IMPACT/MOD

[jonquet]

New metrics discussion is here :
ontoportal-lirmm/ontologies_linked_data#103

mod:upperOntology => not needed as we have mod:specializes