diff --git a/poetry.lock b/poetry.lock
index 66c54e76..05bdad8e 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -63,20 +63,20 @@ lxml = ["lxml"]
 
 [[package]]
 name = "bioregistry"
-version = "0.9.51"
+version = "0.9.75"
 description = "Integrated registry of biological databases and nomenclatures"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "bioregistry-0.9.51-py3-none-any.whl", hash = "sha256:805341d7aa3e95271f58d29fceb5697c934c215d8da6ba37f0f281ac82ec7d3a"},
-    {file = "bioregistry-0.9.51.tar.gz", hash = "sha256:b0e42e832e4c9dbb8df69961c2aa5133e5a2de1035d31c1bd7a744429a50c445"},
+    {file = "bioregistry-0.9.75-py3-none-any.whl", hash = "sha256:cf74e21c9c11dc19fa65b59da70d60bdcea259dc37a785f834eaa4f3c4eb4b1f"},
+    {file = "bioregistry-0.9.75.tar.gz", hash = "sha256:46ac79e9683d36c66f3114692d903c3e24a1105f4a18b764faf6af2f2ed71d88"},
 ]
 
 [package.dependencies]
 click = "*"
-curies = ">=0.5.1"
+curies = ">=0.5.6"
 more-click = ">=0.1.2"
-pydantic = "*"
+pydantic = "<2.0"
 pystow = ">=0.1.13"
 requests = "*"
 tqdm = "*"
@@ -126,97 +126,97 @@ files = [
 
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 name = "charset-normalizer"
-version = "3.1.0"
+version = "3.2.0"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
 optional = false
 python-versions = ">=3.7.0"
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 ]
 
 [[package]]
 name = "click"
-version = "8.1.3"
+version = "8.1.5"
 description = "Composable command line interface toolkit"
 optional = false
 python-versions = ">=3.7"
 files = [
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-    {file = "click-8.1.3.tar.gz", hash = "sha256:7682dc8afb30297001674575ea00d1814d808d6a36af415a82bd481d37ba7b8e"},
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 ]
 
 [package.dependencies]
@@ -235,23 +235,23 @@ files = [
 
 [[package]]
 name = "curies"
-version = "0.5.5"
+version = "0.5.6"
 description = "Idiomatic conversion between URIs and compact URIs (CURIEs)."
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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+    {file = "curies-0.5.6-py3-none-any.whl", hash = "sha256:27eee34218bf645fdfb5c457bacfba0274146277bac600d9b9a83d2e5e01abcd"},
+    {file = "curies-0.5.6.tar.gz", hash = "sha256:fd9e72ea9b167911057726bd537c9956ed96d88ce71aecf59f9a47c6ca484ffe"},
 ]
 
 [package.dependencies]
-pydantic = "*"
+pydantic = "<2.0"
 pytrie = "*"
 requests = "*"
 
 [package.extras]
 bioregistry = ["bioregistry (>=0.5.136)"]
-docs = ["sphinx", "sphinx-autodoc-typehints", "sphinx-automodapi", "sphinx-rtd-theme"]
+docs = ["sphinx (<7.0)", "sphinx-autodoc-typehints", "sphinx-automodapi", "sphinx-rtd-theme"]
 fastapi = ["defusedxml", "fastapi", "httpx", "python-multipart", "uvicorn"]
 flask = ["defusedxml", "flask"]
 pandas = ["pandas"]
@@ -335,13 +335,13 @@ files = [
 
 [[package]]
 name = "exceptiongroup"
-version = "1.1.1"
+version = "1.1.2"
 description = "Backport of PEP 654 (exception groups)"
 optional = false
 python-versions = ">=3.7"
 files = [
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+    {file = "exceptiongroup-1.1.2-py3-none-any.whl", hash = "sha256:e346e69d186172ca7cf029c8c1d16235aa0e04035e5750b4b95039e65204328f"},
+    {file = "exceptiongroup-1.1.2.tar.gz", hash = "sha256:12c3e887d6485d16943a309616de20ae5582633e0a2eda17f4e10fd61c1e8af5"},
 ]
 
 [package.extras]
@@ -487,13 +487,13 @@ files = [
 
 [[package]]
 name = "importlib-metadata"
-version = "6.7.0"
+version = "6.8.0"
 description = "Read metadata from Python packages"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "importlib_metadata-6.7.0-py3-none-any.whl", hash = "sha256:cb52082e659e97afc5dac71e79de97d8681de3aa07ff18578330904a9d18e5b5"},
-    {file = "importlib_metadata-6.7.0.tar.gz", hash = "sha256:1aaf550d4f73e5d6783e7acb77aec43d49da8017410afae93822cc9cca98c4d4"},
+    {file = "importlib_metadata-6.8.0-py3-none-any.whl", hash = "sha256:3ebb78df84a805d7698245025b975d9d67053cd94c79245ba4b3eb694abe68bb"},
+    {file = "importlib_metadata-6.8.0.tar.gz", hash = "sha256:dbace7892d8c0c4ac1ad096662232f831d4e64f4c4545bd53016a3e9d4654743"},
 ]
 
 [package.dependencies]
@@ -502,25 +502,25 @@ zipp = ">=0.5"
 [package.extras]
 docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
 perf = ["ipython"]
-testing = ["flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)", "pytest-ruff"]
+testing = ["flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)", "pytest-ruff"]
 
 [[package]]
 name = "importlib-resources"
-version = "5.12.0"
+version = "6.0.0"
 description = "Read resources from Python packages"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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 [package.dependencies]
 zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""}
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
-testing = ["flake8 (<5)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+testing = ["pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
 
 [[package]]
 name = "iniconfig"
@@ -609,25 +609,42 @@ hbreader = "*"
 
 [[package]]
 name = "jsonschema"
-version = "4.17.3"
+version = "4.18.3"
 description = "An implementation of JSON Schema validation for Python"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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 ]
 
 [package.dependencies]
-attrs = ">=17.4.0"
+attrs = ">=22.2.0"
 importlib-resources = {version = ">=1.4.0", markers = "python_version < \"3.9\""}
+jsonschema-specifications = ">=2023.03.6"
 pkgutil-resolve-name = {version = ">=1.3.10", markers = "python_version < \"3.9\""}
-pyrsistent = ">=0.14.0,<0.17.0 || >0.17.0,<0.17.1 || >0.17.1,<0.17.2 || >0.17.2"
+referencing = ">=0.28.4"
+rpds-py = ">=0.7.1"
 
 [package.extras]
 format = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3987", "uri-template", "webcolors (>=1.11)"]
 format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=1.11)"]
 
+[[package]]
+name = "jsonschema-specifications"
+version = "2023.6.1"
+description = "The JSON Schema meta-schemas and vocabularies, exposed as a Registry"
+optional = false
+python-versions = ">=3.8"
+files = [
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+]
+
+[package.dependencies]
+importlib-resources = {version = ">=1.4.0", markers = "python_version < \"3.9\""}
+referencing = ">=0.28.0"
+
 [[package]]
 name = "linkml-runtime"
 version = "1.5.4"
@@ -825,13 +842,13 @@ min-versions = ["babel (==2.9.0)", "click (==7.0)", "colorama (==0.4)", "ghp-imp
 
 [[package]]
 name = "mkdocs-material"
-version = "9.1.16"
+version = "9.1.18"
 description = "Documentation that simply works"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [package.dependencies]
@@ -940,39 +957,39 @@ test = ["codecov (>=2.1)", "pytest (>=7.2)", "pytest-cov (>=4.0)"]
 
 [[package]]
 name = "numpy"
-version = "1.24.3"
+version = "1.24.4"
 description = "Fundamental package for array computing in Python"
 optional = false
 python-versions = ">=3.8"
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 ]
 
 [[package]]
@@ -988,36 +1005,36 @@ files = [
 
 [[package]]
 name = "pandas"
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 description = "Powerful data structures for data analysis, time series, and statistics"
 optional = false
 python-versions = ">=3.8"
 files = [
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 [package.dependencies]
@@ -1217,13 +1234,13 @@ plugins = ["importlib-metadata"]
 
 [[package]]
 name = "pymdown-extensions"
-version = "10.0.1"
+version = "10.1"
 description = "Extension pack for Python Markdown."
 optional = false
 python-versions = ">=3.7"
 files = [
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 [package.dependencies]
@@ -1246,13 +1263,13 @@ diagrams = ["jinja2", "railroad-diagrams"]
 
 [[package]]
 name = "pyproject-api"
-version = "1.5.2"
+version = "1.5.3"
 description = "API to interact with the python pyproject.toml based projects"
 optional = false
 python-versions = ">=3.7"
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 [package.dependencies]
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-
 [[package]]
 name = "pystow"
 version = "0.5.0"
@@ -1325,13 +1306,13 @@ xml = ["lxml"]
 
 [[package]]
 name = "pytest"
-version = "7.3.2"
+version = "7.4.0"
 description = "pytest: simple powerful testing with Python"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [package.dependencies]
@@ -1480,6 +1461,21 @@ html = ["html5lib (>=1.0,<2.0)"]
 lxml = ["lxml (>=4.3.0,<5.0.0)"]
 networkx = ["networkx (>=2.0.0,<3.0.0)"]
 
+[[package]]
+name = "referencing"
+version = "0.29.1"
+description = "JSON Referencing + Python"
+optional = false
+python-versions = ">=3.8"
+files = [
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+]
+
+[package.dependencies]
+attrs = ">=22.2.0"
+rpds-py = ">=0.7.0"
+
 [[package]]
 name = "regex"
 version = "2023.6.3"
@@ -1598,43 +1594,149 @@ urllib3 = ">=1.21.1,<3"
 socks = ["PySocks (>=1.5.6,!=1.5.7)"]
 use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"]
 
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+    {file = "SQLAlchemy-2.0.18.tar.gz", hash = "sha256:1fb792051db66e09c200e7bc3bda3b1eb18a5b8eb153d2cedb2b14b56a68b8cb"},
 ]
 
 [package.dependencies]
@@ -2014,13 +2108,13 @@ files = [
 
 [[package]]
 name = "tox"
-version = "4.6.3"
+version = "4.6.4"
 description = "tox is a generic virtualenv management and test command line tool"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "tox-4.6.3-py3-none-any.whl", hash = "sha256:2946a0bb38924c3a9f9575c7fb4ca1f4c11a7c69c61592f176778892155cb50c"},
-    {file = "tox-4.6.3.tar.gz", hash = "sha256:9e2c5091a117d03b583c57c4c40aecd068099c17d40520e7b165e85c19334534"},
+    {file = "tox-4.6.4-py3-none-any.whl", hash = "sha256:1b8f8ae08d6a5475cad9d508236c51ea060620126fd7c3c513d0f5c7f29cc776"},
+    {file = "tox-4.6.4.tar.gz", hash = "sha256:5e2ad8845764706170d3dcaac171704513cc8a725655219acb62fe4380bdadda"},
 ]
 
 [package.dependencies]
@@ -2029,15 +2123,15 @@ chardet = ">=5.1"
 colorama = ">=0.4.6"
 filelock = ">=3.12.2"
 packaging = ">=23.1"
-platformdirs = ">=3.5.3"
-pluggy = ">=1"
+platformdirs = ">=3.8"
+pluggy = ">=1.2"
 pyproject-api = ">=1.5.2"
 tomli = {version = ">=2.0.1", markers = "python_version < \"3.11\""}
 virtualenv = ">=20.23.1"
 
 [package.extras]
-docs = ["furo (>=2023.5.20)", "sphinx (>=7.0.1)", "sphinx-argparse-cli (>=1.11.1)", "sphinx-autodoc-typehints (>=1.23.2,!=1.23.4)", "sphinx-copybutton (>=0.5.2)", "sphinx-inline-tabs (>=2023.4.21)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.6)"]
-testing = ["build[virtualenv] (>=0.10)", "covdefaults (>=2.3)", "detect-test-pollution (>=1.1.1)", "devpi-process (>=0.3.1)", "diff-cover (>=7.6)", "distlib (>=0.3.6)", "flaky (>=3.7)", "hatch-vcs (>=0.3)", "hatchling (>=1.17.1)", "psutil (>=5.9.5)", "pytest (>=7.3.2)", "pytest-cov (>=4.1)", "pytest-mock (>=3.11.1)", "pytest-xdist (>=3.3.1)", "re-assert (>=1.1)", "time-machine (>=2.10)", "wheel (>=0.40)"]
+docs = ["furo (>=2023.5.20)", "sphinx (>=7.0.1)", "sphinx-argparse-cli (>=1.11.1)", "sphinx-autodoc-typehints (>=1.23.3,!=1.23.4)", "sphinx-copybutton (>=0.5.2)", "sphinx-inline-tabs (>=2023.4.21)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.6)"]
+testing = ["build[virtualenv] (>=0.10)", "covdefaults (>=2.3)", "detect-test-pollution (>=1.1.1)", "devpi-process (>=0.3.1)", "diff-cover (>=7.6)", "distlib (>=0.3.6)", "flaky (>=3.7)", "hatch-vcs (>=0.3)", "hatchling (>=1.17.1)", "psutil (>=5.9.5)", "pytest (>=7.4)", "pytest-cov (>=4.1)", "pytest-mock (>=3.11.1)", "pytest-xdist (>=3.3.1)", "re-assert (>=1.1)", "time-machine (>=2.10)", "wheel (>=0.40)"]
 
 [[package]]
 name = "tqdm"
@@ -2061,13 +2155,13 @@ telegram = ["requests"]
 
 [[package]]
 name = "typing-extensions"
-version = "4.6.3"
+version = "4.7.1"
 description = "Backported and Experimental Type Hints for Python 3.7+"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "typing_extensions-4.6.3-py3-none-any.whl", hash = "sha256:88a4153d8505aabbb4e13aacb7c486c2b4a33ca3b3f807914a9b4c844c471c26"},
-    {file = "typing_extensions-4.6.3.tar.gz", hash = "sha256:d91d5919357fe7f681a9f2b5b4cb2a5f1ef0a1e9f59c4d8ff0d3491e05c0ffd5"},
+    {file = "typing_extensions-4.7.1-py3-none-any.whl", hash = "sha256:440d5dd3af93b060174bf433bccd69b0babc3b15b1a8dca43789fd7f61514b36"},
+    {file = "typing_extensions-4.7.1.tar.gz", hash = "sha256:b75ddc264f0ba5615db7ba217daeb99701ad295353c45f9e95963337ceeeffb2"},
 ]
 
 [[package]]
@@ -2259,20 +2353,20 @@ files = [
 
 [[package]]
 name = "zipp"
-version = "3.15.0"
+version = "3.16.2"
 description = "Backport of pathlib-compatible object wrapper for zip files"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "zipp-3.15.0-py3-none-any.whl", hash = "sha256:48904fc76a60e542af151aded95726c1a5c34ed43ab4134b597665c86d7ad556"},
-    {file = "zipp-3.15.0.tar.gz", hash = "sha256:112929ad649da941c23de50f356a2b5570c954b65150642bccdd66bf194d224b"},
+    {file = "zipp-3.16.2-py3-none-any.whl", hash = "sha256:679e51dd4403591b2d6838a48de3d283f3d188412a9782faadf845f298736ba0"},
+    {file = "zipp-3.16.2.tar.gz", hash = "sha256:ebc15946aa78bd63458992fc81ec3b6f7b1e92d51c35e6de1c3804e73b799147"},
 ]
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
-testing = ["big-O", "flake8 (<5)", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
 
 [metadata]
 lock-version = "2.0"
-python-versions = ">=3.8,<3.12"
-content-hash = "5319054c65c9cba0821cd55cd88f2563fc32ea599fd778e20c293fc390eaf5ad"
+python-versions = "^3.8"
+content-hash = "354a37235ea931327168b45e655e333a294d022ac1285b3450869f7a1f26a6ef"
diff --git a/pyproject.toml b/pyproject.toml
index 95122ef8..a05213ae 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -11,7 +11,7 @@ license = "MIT"
 readme = "README.md"
 
 [tool.poetry.dependencies]
-python = ">=3.8,<3.12"
+python = "^3.8"
 click = "*"
 importlib-metadata = ">=4.8.0"
 pyparsing = "^3.0.9"
@@ -26,7 +26,7 @@ rdflib = "^6.3.2"
 sparqlwrapper = "^2.0.0"
 sssom-schema = "^0.13.0"
 validators = "^0.20.0"
-scipy = "^1.10.1"
+scipy = "*"
 
 [tool.poetry.group.dev.dependencies]
 pytest = {version = ">=7.1.2"}