From 035b64446c3c79da4a3fb4fad9a2f78787074d93 Mon Sep 17 00:00:00 2001 From: Alexander Goscinski Date: Mon, 25 Nov 2024 11:59:32 +0100 Subject: [PATCH] Mark private API with an underscore The AiiDA public API has been defined in the documentation as every import that can be done from a secondary level. This is however not transparent to users and plugin developers as it is hidden in the doc resulting in a lot of misuse of private functionalities. The widespread use of these private functionalities blocks improvements in the code as we are more hesitant in changing functionalities for wrong backwards compatibility. This PR marks clearly the internal functioanlities with an underscore so a misuse only can happen intentionally. This gives us the opportunity to improve the public API as we can implement replacements for functionalities in the private API that are widely used. --- src/aiida/__init__.py | 4 ++-- src/aiida/__main__.py | 2 +- src/aiida/brokers/__init__.py | 2 +- src/aiida/brokers/{broker.py => _broker.py} | 0 .../{rabbitmq => _rabbitmq}/__init__.py | 0 .../brokers/{rabbitmq => _rabbitmq}/broker.py | 0 .../brokers/{rabbitmq => _rabbitmq}/client.py | 0 .../{rabbitmq => _rabbitmq}/defaults.py | 0 .../brokers/{rabbitmq => _rabbitmq}/utils.py | 0 .../{arithmetic => _arithmetic}/__init__.py | 0 .../{arithmetic => _arithmetic}/add.py | 0 .../calculations.py | 0 .../{importers => _importers}/__init__.py | 0 .../arithmetic/__init__.py | 0 .../arithmetic/add.py | 0 .../{monitors => _monitors}/__init__.py | 0 .../{monitors => _monitors}/base.py | 0 ...mplatereplacer.py => _templatereplacer.py} | 0 .../{transfer.py => _transfer.py} | 0 src/aiida/cmdline/__init__.py | 6 ++--- .../{commands => _commands}/__init__.py | 0 .../{commands => _commands}/cmd_archive.py | 0 .../{commands => _commands}/cmd_calcjob.py | 0 .../{commands => _commands}/cmd_code.py | 0 .../{commands => _commands}/cmd_computer.py | 0 .../{commands => _commands}/cmd_config.py | 0 .../{commands => _commands}/cmd_daemon.py | 0 .../cmd_data/__init__.py | 0 .../cmd_data/cmd_array.py | 0 .../cmd_data/cmd_bands.py | 0 .../cmd_data/cmd_cif.py | 0 .../cmd_data/cmd_dict.py | 0 .../cmd_data/cmd_export.py | 0 .../cmd_data/cmd_list.py | 0 .../cmd_data/cmd_remote.py | 0 .../cmd_data/cmd_show.py | 0 .../cmd_data/cmd_singlefile.py | 0 .../cmd_data/cmd_structure.py | 0 .../cmd_data/cmd_trajectory.py | 0 .../cmd_data/cmd_upf.py | 0 .../{commands => _commands}/cmd_devel.py | 0 .../{commands => _commands}/cmd_group.py | 0 .../{commands => _commands}/cmd_help.py | 0 .../{commands => _commands}/cmd_node.py | 0 .../{commands => _commands}/cmd_plugin.py | 0 .../{commands => _commands}/cmd_presto.py | 0 .../{commands => _commands}/cmd_process.py | 0 .../{commands => _commands}/cmd_profile.py | 0 .../{commands => _commands}/cmd_rabbitmq.py | 0 .../{commands => _commands}/cmd_restapi.py | 0 .../{commands => _commands}/cmd_run.py | 0 .../{commands => _commands}/cmd_setup.py | 0 .../{commands => _commands}/cmd_shell.py | 0 .../{commands => _commands}/cmd_status.py | 0 .../{commands => _commands}/cmd_storage.py | 0 .../{commands => _commands}/cmd_user.py | 0 .../{commands => _commands}/cmd_verdi.py | 0 .../cmdline/{groups => _groups}/__init__.py | 0 .../cmdline/{groups => _groups}/dynamic.py | 0 .../cmdline/{groups => _groups}/verdi.py | 0 .../cmdline/{params => _params}/__init__.py | 0 .../{params => _params}/arguments/__init__.py | 0 .../{params => _params}/arguments/main.py | 0 .../arguments/overridable.py | 0 .../{params => _params}/options/__init__.py | 0 .../{params => _params}/options/callable.py | 0 .../options/commands/__init__.py | 0 .../options/commands/code.py | 0 .../options/commands/computer.py | 0 .../options/commands/setup.py | 0 .../options/conditional.py | 0 .../{params => _params}/options/config.py | 0 .../options/interactive.py | 0 .../{params => _params}/options/main.py | 0 .../{params => _params}/options/multivalue.py | 0 .../options/overridable.py | 0 .../{params => _params}/types/__init__.py | 0 .../{params => _params}/types/calculation.py | 0 .../{params => _params}/types/choice.py | 0 .../cmdline/{params => _params}/types/code.py | 0 .../{params => _params}/types/computer.py | 0 .../{params => _params}/types/config.py | 0 .../cmdline/{params => _params}/types/data.py | 0 .../{params => _params}/types/group.py | 0 .../{params => _params}/types/identifier.py | 0 .../{params => _params}/types/multiple.py | 0 .../cmdline/{params => _params}/types/node.py | 0 .../cmdline/{params => _params}/types/path.py | 0 .../{params => _params}/types/plugin.py | 0 .../{params => _params}/types/process.py | 0 .../{params => _params}/types/profile.py | 0 .../{params => _params}/types/strings.py | 0 .../cmdline/{params => _params}/types/user.py | 0 .../{params => _params}/types/workflow.py | 0 .../{templates => _templates}/deprecated.tpl | 0 .../{templates => _templates}/multiline.tpl | 0 .../{templates => _templates}/new_cmt.txt.tpl | 0 .../{templates => _templates}/warning.tpl | 0 .../cmdline/{utils => _utils}/__init__.py | 0 .../cmdline/{utils => _utils}/ascii_vis.py | 0 src/aiida/cmdline/{utils => _utils}/common.py | 0 .../cmdline/{utils => _utils}/decorators.py | 0 .../cmdline/{utils => _utils}/defaults.py | 0 src/aiida/cmdline/{utils => _utils}/echo.py | 0 src/aiida/cmdline/{utils => _utils}/log.py | 0 .../{utils => _utils}/multi_line_input.py | 0 .../cmdline/{utils => _utils}/pluginable.py | 0 .../{utils => _utils}/query/__init__.py | 0 .../{utils => _utils}/query/calculation.py | 0 .../{utils => _utils}/query/formatting.py | 0 .../{utils => _utils}/query/mapping.py | 0 .../cmdline/{utils => _utils}/repository.py | 0 src/aiida/cmdline/{utils => _utils}/shell.py | 0 .../cmdline/{utils => _utils}/templates.py | 0 src/aiida/common/__init__.py | 12 +++++----- .../common/{constants.py => _constants.py} | 0 .../{datastructures.py => _datastructures.py} | 0 src/aiida/common/{docs.py => _docs.py} | 0 .../common/{escaping.py => _escaping.py} | 0 .../common/{exceptions.py => _exceptions.py} | 0 .../{extendeddicts.py => _extendeddicts.py} | 0 src/aiida/common/{files.py => _files.py} | 0 src/aiida/common/{folders.py => _folders.py} | 0 src/aiida/common/{hashing.py => _hashing.py} | 0 src/aiida/common/{json.py => _json.py} | 0 src/aiida/common/{lang.py => _lang.py} | 0 src/aiida/common/{links.py => _links.py} | 0 src/aiida/common/{log.py => _log.py} | 0 ...ress_reporter.py => _progress_reporter.py} | 0 .../common/{pydantic.py => _pydantic.py} | 0 .../common/{timezone.py => _timezone.py} | 0 src/aiida/common/{utils.py => _utils.py} | 0 .../common/{warnings.py => _warnings.py} | 0 src/aiida/engine/__init__.py | 14 +++++------ .../engine/{daemon => _daemon}/__init__.py | 0 .../engine/{daemon => _daemon}/client.py | 0 .../engine/{daemon => _daemon}/execmanager.py | 0 .../engine/{daemon => _daemon}/worker.py | 0 .../engine/{exceptions.py => _exceptions.py} | 0 src/aiida/engine/{launch.py => _launch.py} | 0 .../{persistence.py => _persistence.py} | 0 .../{processes => _processes}/__init__.py | 0 .../{processes => _processes}/builder.py | 0 .../calcjobs/__init__.py | 0 .../calcjobs/calcjob.py | 0 .../calcjobs/importer.py | 0 .../calcjobs/manager.py | 0 .../calcjobs/monitors.py | 0 .../calcjobs/tasks.py | 0 .../{processes => _processes}/control.py | 0 .../{processes => _processes}/exit_code.py | 0 .../{processes => _processes}/functions.py | 0 .../{processes => _processes}/futures.py | 0 .../{processes => _processes}/launcher.py | 0 .../engine/{processes => _processes}/ports.py | 0 .../{processes => _processes}/process.py | 0 .../{processes => _processes}/process_spec.py | 0 .../engine/{processes => _processes}/utils.py | 0 .../workchains/__init__.py | 0 .../workchains/awaitable.py | 0 .../workchains/context.py | 0 .../workchains/restart.py | 0 .../workchains/utils.py | 0 .../workchains/workchain.py | 0 src/aiida/engine/{runners.py => _runners.py} | 0 .../engine/{transports.py => _transports.py} | 0 src/aiida/engine/{utils.py => _utils.py} | 0 src/aiida/manage/__init__.py | 8 +++---- src/aiida/manage/{caching.py => _caching.py} | 0 .../__init__.py | 0 .../config.py | 0 .../migrations/__init__.py | 0 .../migrations/migrations.py | 0 .../options.py | 0 .../profile.py | 0 .../schema/__init__.py | 0 .../schema/config-v5.schema.json | 0 .../schema/config-v6.schema.json | 0 .../schema/config-v7.schema.json | 0 .../schema/config-v8.schema.json | 0 .../schema/config-v9.schema.json | 0 .../settings.py | 0 .../{external => _external}/__init__.py | 0 .../{external => _external}/postgres.py | 0 src/aiida/manage/{manager.py => _manager.py} | 0 .../{profile_access.py => _profile_access.py} | 0 .../manage/{tests => _tests}/__init__.py | 0 .../{tests => _tests}/pytest_fixtures.py | 0 src/aiida/orm/__init__.py | 24 +++++++++---------- src/aiida/orm/{authinfos.py => _authinfos.py} | 0 src/aiida/orm/{autogroup.py => _autogroup.py} | 0 src/aiida/orm/{comments.py => _comments.py} | 0 src/aiida/orm/{computers.py => _computers.py} | 0 src/aiida/orm/{convert.py => _convert.py} | 0 src/aiida/orm/{entities.py => _entities.py} | 0 src/aiida/orm/{extras.py => _extras.py} | 0 src/aiida/orm/{fields.py => _fields.py} | 0 src/aiida/orm/{groups.py => _groups.py} | 0 .../__init__.py | 0 .../authinfos.py | 0 .../comments.py | 0 .../computers.py | 0 .../entities.py | 0 .../groups.py | 0 .../logs.py | 0 .../nodes.py | 0 .../querybuilder.py | 0 .../storage_backend.py | 0 .../users.py | 0 .../utils.py | 0 src/aiida/orm/{logs.py => _logs.py} | 0 src/aiida/orm/{nodes => _nodes}/__init__.py | 0 src/aiida/orm/{nodes => _nodes}/attributes.py | 0 src/aiida/orm/{nodes => _nodes}/caching.py | 0 src/aiida/orm/{nodes => _nodes}/comments.py | 0 .../orm/{nodes => _nodes}/data/__init__.py | 0 .../{nodes => _nodes}/data/array/__init__.py | 0 .../orm/{nodes => _nodes}/data/array/array.py | 0 .../orm/{nodes => _nodes}/data/array/bands.py | 0 .../{nodes => _nodes}/data/array/kpoints.py | 0 .../data/array/projection.py | 0 .../data/array/trajectory.py | 0 .../orm/{nodes => _nodes}/data/array/xy.py | 0 src/aiida/orm/{nodes => _nodes}/data/base.py | 0 src/aiida/orm/{nodes => _nodes}/data/bool.py | 0 src/aiida/orm/{nodes => _nodes}/data/cif.py | 0 .../{nodes => _nodes}/data/code/__init__.py | 0 .../{nodes => _nodes}/data/code/abstract.py | 0 .../data/code/containerized.py | 0 .../{nodes => _nodes}/data/code/installed.py | 0 .../orm/{nodes => _nodes}/data/code/legacy.py | 0 .../{nodes => _nodes}/data/code/portable.py | 0 src/aiida/orm/{nodes => _nodes}/data/data.py | 0 src/aiida/orm/{nodes => _nodes}/data/dict.py | 0 src/aiida/orm/{nodes => _nodes}/data/enum.py | 0 src/aiida/orm/{nodes => _nodes}/data/float.py | 0 .../orm/{nodes => _nodes}/data/folder.py | 0 src/aiida/orm/{nodes => _nodes}/data/int.py | 0 .../orm/{nodes => _nodes}/data/jsonable.py | 0 src/aiida/orm/{nodes => _nodes}/data/list.py | 0 .../orm/{nodes => _nodes}/data/numeric.py | 0 .../orm/{nodes => _nodes}/data/orbital.py | 0 .../{nodes => _nodes}/data/remote/__init__.py | 0 .../orm/{nodes => _nodes}/data/remote/base.py | 0 .../data/remote/stash/__init__.py | 0 .../data/remote/stash/base.py | 0 .../data/remote/stash/folder.py | 0 .../orm/{nodes => _nodes}/data/singlefile.py | 0 src/aiida/orm/{nodes => _nodes}/data/str.py | 0 .../orm/{nodes => _nodes}/data/structure.py | 0 src/aiida/orm/{nodes => _nodes}/data/upf.py | 0 src/aiida/orm/{nodes => _nodes}/links.py | 0 src/aiida/orm/{nodes => _nodes}/node.py | 0 .../orm/{nodes => _nodes}/process/__init__.py | 0 .../process/calculation/__init__.py | 0 .../process/calculation/calcfunction.py | 0 .../process/calculation/calcjob.py | 0 .../process/calculation/calculation.py | 0 .../orm/{nodes => _nodes}/process/process.py | 0 .../process/workflow/__init__.py | 0 .../process/workflow/workchain.py | 0 .../process/workflow/workflow.py | 0 .../process/workflow/workfunction.py | 0 src/aiida/orm/{nodes => _nodes}/repository.py | 0 .../orm/{querybuilder.py => _querybuilder.py} | 0 src/aiida/orm/{users.py => _users.py} | 0 src/aiida/orm/{utils => _utils}/__init__.py | 0 .../{utils => _utils}/builders/__init__.py | 0 .../orm/{utils => _utils}/builders/code.py | 0 .../{utils => _utils}/builders/computer.py | 0 src/aiida/orm/{utils => _utils}/calcjob.py | 0 src/aiida/orm/{utils => _utils}/links.py | 0 src/aiida/orm/{utils => _utils}/loaders.py | 0 src/aiida/orm/{utils => _utils}/log.py | 0 src/aiida/orm/{utils => _utils}/managers.py | 0 src/aiida/orm/{utils => _utils}/mixins.py | 0 src/aiida/orm/{utils => _utils}/node.py | 0 src/aiida/orm/{utils => _utils}/remote.py | 0 src/aiida/orm/{utils => _utils}/serialize.py | 0 src/aiida/parsers/__init__.py | 2 +- src/aiida/parsers/{parser.py => _parser.py} | 0 .../parsers/{plugins => _plugins}/__init__.py | 0 .../arithmetic/__init__.py | 0 .../{plugins => _plugins}/arithmetic/add.py | 0 .../diff_tutorial/parsers.py | 0 .../templatereplacer/__init__.py | 0 .../templatereplacer/parser.py | 0 src/aiida/plugins/__init__.py | 6 ++--- .../{entry_point.py => _entry_point.py} | 0 .../plugins/{factories.py => _factories.py} | 0 src/aiida/plugins/{utils.py => _utils.py} | 0 src/aiida/repository/__init__.py | 6 ++--- .../{backend => _backend}/__init__.py | 0 .../{backend => _backend}/abstract.py | 0 .../disk_object_store.py | 0 .../{backend => _backend}/sandbox.py | 0 .../repository/{common.py => _common.py} | 0 .../{repository.py => _repository.py} | 0 src/aiida/restapi/{api.py => _api.py} | 0 .../restapi/{common => _common}/__init__.py | 0 .../restapi/{common => _common}/config.py | 0 .../restapi/{common => _common}/exceptions.py | 0 .../{common => _common}/identifiers.py | 0 .../restapi/{common => _common}/utils.py | 0 .../restapi/{resources.py => _resources.py} | 0 src/aiida/restapi/{run_api.py => _run_api.py} | 0 .../{translator => _translator}/__init__.py | 0 .../{translator => _translator}/base.py | 0 .../{translator => _translator}/computer.py | 0 .../{translator => _translator}/group.py | 0 .../nodes/__init__.py | 0 .../nodes/data/__init__.py | 0 .../nodes/data/array/__init__.py | 0 .../nodes/data/array/bands.py | 0 .../nodes/data/cif.py | 0 .../nodes/data/code.py | 0 .../nodes/data/kpoints.py | 0 .../nodes/data/structure.py | 0 .../nodes/data/upf.py | 0 .../{translator => _translator}/nodes/node.py | 0 .../nodes/process/__init__.py | 0 .../nodes/process/calculation/__init__.py | 0 .../nodes/process/calculation/calcfunction.py | 0 .../nodes/process/calculation/calcjob.py | 0 .../nodes/process/process.py | 0 .../nodes/process/workflow/__init__.py | 0 .../nodes/process/workflow/workchain.py | 0 .../nodes/process/workflow/workfunction.py | 0 .../{translator => _translator}/user.py | 0 src/aiida/schedulers/__init__.py | 6 ++--- .../{datastructures.py => _datastructures.py} | 0 .../{plugins => _plugins}/__init__.py | 0 .../schedulers/{plugins => _plugins}/bash.py | 0 .../{plugins => _plugins}/direct.py | 0 .../schedulers/{plugins => _plugins}/lsf.py | 0 .../{plugins => _plugins}/pbsbaseclasses.py | 0 .../{plugins => _plugins}/pbspro.py | 0 .../schedulers/{plugins => _plugins}/sge.py | 0 .../schedulers/{plugins => _plugins}/slurm.py | 0 .../{plugins => _plugins}/torque.py | 0 .../{scheduler.py => _scheduler.py} | 0 .../sphinxext/{calcjob.py => _calcjob.py} | 0 .../sphinxext/{process.py => _process.py} | 0 .../sphinxext/{workchain.py => _workchain.py} | 0 src/aiida/storage/__init__.py | 2 +- src/aiida/storage/{log.py => _log.py} | 0 .../storage/{migrations.py => _migrations.py} | 0 .../{psql_dos => _psql_dos}/__init__.py | 0 .../{psql_dos => _psql_dos}/alembic_cli.py | 0 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src/aiida/tools/{groups => _groups}/paths.py (100%) rename src/aiida/tools/{ipython => _ipython}/__init__.py (100%) rename src/aiida/tools/{ipython => _ipython}/aiida_magic_register.py (100%) rename src/aiida/tools/{ipython => _ipython}/ipython_magics.py (100%) rename src/aiida/tools/{pytest_fixtures => _pytest_fixtures}/__init__.py (100%) rename src/aiida/tools/{pytest_fixtures => _pytest_fixtures}/configuration.py (100%) rename src/aiida/tools/{pytest_fixtures => _pytest_fixtures}/daemon.py (100%) rename src/aiida/tools/{pytest_fixtures => _pytest_fixtures}/entry_points.py (100%) rename src/aiida/tools/{pytest_fixtures => _pytest_fixtures}/globals.py (100%) rename src/aiida/tools/{pytest_fixtures => _pytest_fixtures}/orm.py (100%) rename src/aiida/tools/{pytest_fixtures => _pytest_fixtures}/storage.py (100%) rename src/aiida/tools/{query => _query}/__init__.py (100%) rename src/aiida/tools/{query => _query}/calculation.py (100%) rename src/aiida/tools/{query => _query}/formatting.py (100%) rename src/aiida/tools/{query => _query}/mapping.py (100%) rename src/aiida/tools/{visualization => _visualization}/__init__.py (100%) rename src/aiida/tools/{visualization => _visualization}/graph.py (100%) rename src/aiida/transports/{cli.py => _cli.py} (100%) rename src/aiida/transports/{plugins => _plugins}/__init__.py (100%) rename src/aiida/transports/{plugins => _plugins}/local.py (100%) rename src/aiida/transports/{plugins => _plugins}/ssh.py (100%) rename src/aiida/transports/{plugins => _plugins}/ssh_auto.py (100%) rename src/aiida/transports/{transport.py => _transport.py} (100%) rename src/aiida/transports/{util.py => _util.py} (100%) rename src/aiida/workflows/{arithmetic => _arithmetic}/__init__.py (100%) rename src/aiida/workflows/{arithmetic => _arithmetic}/add_multiply.py (100%) rename src/aiida/workflows/{arithmetic => _arithmetic}/multiply_add.py (100%) diff --git a/src/aiida/__init__.py b/src/aiida/__init__.py index 743c5009ab..32704af096 100644 --- a/src/aiida/__init__.py +++ b/src/aiida/__init__.py @@ -19,8 +19,8 @@ More information at http://www.aiida.net """ -from aiida.common.log import configure_logging # noqa: F401 -from aiida.manage.configuration import get_config_option, get_profile, load_profile, profile_context # noqa: F401 +from aiida.common._log import configure_logging # noqa: F401 +from aiida.manage._configuration import get_config_option, get_profile, load_profile, profile_context # noqa: F401 __copyright__ = ( 'Copyright (c), This file is part of the AiiDA platform. ' diff --git a/src/aiida/__main__.py b/src/aiida/__main__.py index f7a58e0091..03a50c429f 100644 --- a/src/aiida/__main__.py +++ b/src/aiida/__main__.py @@ -11,6 +11,6 @@ import sys if __name__ == '__main__': - from aiida.cmdline.commands.cmd_verdi import verdi + from aiida.cmdline._commands.cmd_verdi import verdi sys.exit(verdi()) diff --git a/src/aiida/brokers/__init__.py b/src/aiida/brokers/__init__.py index 6734799199..edff5cdb69 100644 --- a/src/aiida/brokers/__init__.py +++ b/src/aiida/brokers/__init__.py @@ -1,3 +1,3 @@ -from .broker import Broker +from ._broker import Broker __all__ = ('Broker',) diff --git a/src/aiida/brokers/broker.py b/src/aiida/brokers/_broker.py similarity index 100% rename from src/aiida/brokers/broker.py rename to src/aiida/brokers/_broker.py diff --git a/src/aiida/brokers/rabbitmq/__init__.py b/src/aiida/brokers/_rabbitmq/__init__.py similarity index 100% rename from src/aiida/brokers/rabbitmq/__init__.py rename to src/aiida/brokers/_rabbitmq/__init__.py diff --git a/src/aiida/brokers/rabbitmq/broker.py b/src/aiida/brokers/_rabbitmq/broker.py similarity index 100% rename from src/aiida/brokers/rabbitmq/broker.py rename to src/aiida/brokers/_rabbitmq/broker.py diff --git a/src/aiida/brokers/rabbitmq/client.py b/src/aiida/brokers/_rabbitmq/client.py similarity index 100% rename from src/aiida/brokers/rabbitmq/client.py rename to src/aiida/brokers/_rabbitmq/client.py diff --git a/src/aiida/brokers/rabbitmq/defaults.py b/src/aiida/brokers/_rabbitmq/defaults.py similarity index 100% rename from src/aiida/brokers/rabbitmq/defaults.py rename to src/aiida/brokers/_rabbitmq/defaults.py diff --git a/src/aiida/brokers/rabbitmq/utils.py b/src/aiida/brokers/_rabbitmq/utils.py similarity index 100% rename from src/aiida/brokers/rabbitmq/utils.py rename to src/aiida/brokers/_rabbitmq/utils.py diff --git a/src/aiida/calculations/arithmetic/__init__.py b/src/aiida/calculations/_arithmetic/__init__.py similarity index 100% rename from src/aiida/calculations/arithmetic/__init__.py rename to src/aiida/calculations/_arithmetic/__init__.py diff --git a/src/aiida/calculations/arithmetic/add.py b/src/aiida/calculations/_arithmetic/add.py similarity index 100% rename from src/aiida/calculations/arithmetic/add.py rename to src/aiida/calculations/_arithmetic/add.py diff --git a/src/aiida/calculations/diff_tutorial/calculations.py b/src/aiida/calculations/_diff_tutorial/calculations.py similarity index 100% rename from src/aiida/calculations/diff_tutorial/calculations.py rename to src/aiida/calculations/_diff_tutorial/calculations.py diff --git a/src/aiida/calculations/importers/__init__.py b/src/aiida/calculations/_importers/__init__.py similarity index 100% rename from src/aiida/calculations/importers/__init__.py rename to src/aiida/calculations/_importers/__init__.py diff --git a/src/aiida/calculations/importers/arithmetic/__init__.py b/src/aiida/calculations/_importers/arithmetic/__init__.py similarity index 100% rename from src/aiida/calculations/importers/arithmetic/__init__.py rename to src/aiida/calculations/_importers/arithmetic/__init__.py diff --git a/src/aiida/calculations/importers/arithmetic/add.py b/src/aiida/calculations/_importers/arithmetic/add.py similarity index 100% rename from src/aiida/calculations/importers/arithmetic/add.py rename to src/aiida/calculations/_importers/arithmetic/add.py diff --git a/src/aiida/calculations/monitors/__init__.py b/src/aiida/calculations/_monitors/__init__.py similarity index 100% rename from src/aiida/calculations/monitors/__init__.py rename to src/aiida/calculations/_monitors/__init__.py diff --git a/src/aiida/calculations/monitors/base.py b/src/aiida/calculations/_monitors/base.py similarity index 100% rename from src/aiida/calculations/monitors/base.py rename to src/aiida/calculations/_monitors/base.py diff --git a/src/aiida/calculations/templatereplacer.py b/src/aiida/calculations/_templatereplacer.py similarity index 100% rename from src/aiida/calculations/templatereplacer.py rename to src/aiida/calculations/_templatereplacer.py diff --git a/src/aiida/calculations/transfer.py b/src/aiida/calculations/_transfer.py similarity index 100% rename from src/aiida/calculations/transfer.py rename to src/aiida/calculations/_transfer.py diff --git a/src/aiida/cmdline/__init__.py b/src/aiida/cmdline/__init__.py index 931695326f..29cf9f72fd 100644 --- a/src/aiida/cmdline/__init__.py +++ b/src/aiida/cmdline/__init__.py @@ -12,9 +12,9 @@ # fmt: off -from .groups import * -from .params import * -from .utils import * +from ._groups import * +from ._params import * +from ._utils import * __all__ = ( 'AbsolutePathParamType', diff --git a/src/aiida/cmdline/commands/__init__.py b/src/aiida/cmdline/_commands/__init__.py similarity index 100% rename from src/aiida/cmdline/commands/__init__.py rename to src/aiida/cmdline/_commands/__init__.py diff --git a/src/aiida/cmdline/commands/cmd_archive.py b/src/aiida/cmdline/_commands/cmd_archive.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_archive.py rename to src/aiida/cmdline/_commands/cmd_archive.py diff --git a/src/aiida/cmdline/commands/cmd_calcjob.py b/src/aiida/cmdline/_commands/cmd_calcjob.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_calcjob.py rename to src/aiida/cmdline/_commands/cmd_calcjob.py diff --git a/src/aiida/cmdline/commands/cmd_code.py b/src/aiida/cmdline/_commands/cmd_code.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_code.py rename to src/aiida/cmdline/_commands/cmd_code.py diff --git a/src/aiida/cmdline/commands/cmd_computer.py b/src/aiida/cmdline/_commands/cmd_computer.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_computer.py rename to src/aiida/cmdline/_commands/cmd_computer.py diff --git a/src/aiida/cmdline/commands/cmd_config.py b/src/aiida/cmdline/_commands/cmd_config.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_config.py rename to src/aiida/cmdline/_commands/cmd_config.py diff --git a/src/aiida/cmdline/commands/cmd_daemon.py b/src/aiida/cmdline/_commands/cmd_daemon.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_daemon.py rename to src/aiida/cmdline/_commands/cmd_daemon.py diff --git a/src/aiida/cmdline/commands/cmd_data/__init__.py b/src/aiida/cmdline/_commands/cmd_data/__init__.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_data/__init__.py rename to src/aiida/cmdline/_commands/cmd_data/__init__.py diff --git a/src/aiida/cmdline/commands/cmd_data/cmd_array.py b/src/aiida/cmdline/_commands/cmd_data/cmd_array.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_data/cmd_array.py rename to src/aiida/cmdline/_commands/cmd_data/cmd_array.py diff --git a/src/aiida/cmdline/commands/cmd_data/cmd_bands.py b/src/aiida/cmdline/_commands/cmd_data/cmd_bands.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_data/cmd_bands.py rename to src/aiida/cmdline/_commands/cmd_data/cmd_bands.py diff --git a/src/aiida/cmdline/commands/cmd_data/cmd_cif.py b/src/aiida/cmdline/_commands/cmd_data/cmd_cif.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_data/cmd_cif.py rename to src/aiida/cmdline/_commands/cmd_data/cmd_cif.py diff --git a/src/aiida/cmdline/commands/cmd_data/cmd_dict.py b/src/aiida/cmdline/_commands/cmd_data/cmd_dict.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_data/cmd_dict.py rename to src/aiida/cmdline/_commands/cmd_data/cmd_dict.py diff --git a/src/aiida/cmdline/commands/cmd_data/cmd_export.py b/src/aiida/cmdline/_commands/cmd_data/cmd_export.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_data/cmd_export.py rename to src/aiida/cmdline/_commands/cmd_data/cmd_export.py diff --git a/src/aiida/cmdline/commands/cmd_data/cmd_list.py b/src/aiida/cmdline/_commands/cmd_data/cmd_list.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_data/cmd_list.py rename to src/aiida/cmdline/_commands/cmd_data/cmd_list.py diff --git a/src/aiida/cmdline/commands/cmd_data/cmd_remote.py b/src/aiida/cmdline/_commands/cmd_data/cmd_remote.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_data/cmd_remote.py rename to src/aiida/cmdline/_commands/cmd_data/cmd_remote.py diff --git a/src/aiida/cmdline/commands/cmd_data/cmd_show.py b/src/aiida/cmdline/_commands/cmd_data/cmd_show.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_data/cmd_show.py rename to src/aiida/cmdline/_commands/cmd_data/cmd_show.py diff --git a/src/aiida/cmdline/commands/cmd_data/cmd_singlefile.py b/src/aiida/cmdline/_commands/cmd_data/cmd_singlefile.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_data/cmd_singlefile.py rename to src/aiida/cmdline/_commands/cmd_data/cmd_singlefile.py diff --git a/src/aiida/cmdline/commands/cmd_data/cmd_structure.py b/src/aiida/cmdline/_commands/cmd_data/cmd_structure.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_data/cmd_structure.py rename to src/aiida/cmdline/_commands/cmd_data/cmd_structure.py diff --git a/src/aiida/cmdline/commands/cmd_data/cmd_trajectory.py b/src/aiida/cmdline/_commands/cmd_data/cmd_trajectory.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_data/cmd_trajectory.py rename to src/aiida/cmdline/_commands/cmd_data/cmd_trajectory.py diff --git a/src/aiida/cmdline/commands/cmd_data/cmd_upf.py b/src/aiida/cmdline/_commands/cmd_data/cmd_upf.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_data/cmd_upf.py rename to src/aiida/cmdline/_commands/cmd_data/cmd_upf.py diff --git a/src/aiida/cmdline/commands/cmd_devel.py b/src/aiida/cmdline/_commands/cmd_devel.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_devel.py rename to src/aiida/cmdline/_commands/cmd_devel.py diff --git a/src/aiida/cmdline/commands/cmd_group.py b/src/aiida/cmdline/_commands/cmd_group.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_group.py rename to src/aiida/cmdline/_commands/cmd_group.py diff --git a/src/aiida/cmdline/commands/cmd_help.py b/src/aiida/cmdline/_commands/cmd_help.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_help.py rename to src/aiida/cmdline/_commands/cmd_help.py diff --git a/src/aiida/cmdline/commands/cmd_node.py b/src/aiida/cmdline/_commands/cmd_node.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_node.py rename to src/aiida/cmdline/_commands/cmd_node.py diff --git a/src/aiida/cmdline/commands/cmd_plugin.py b/src/aiida/cmdline/_commands/cmd_plugin.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_plugin.py rename to src/aiida/cmdline/_commands/cmd_plugin.py diff --git a/src/aiida/cmdline/commands/cmd_presto.py b/src/aiida/cmdline/_commands/cmd_presto.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_presto.py rename to src/aiida/cmdline/_commands/cmd_presto.py diff --git a/src/aiida/cmdline/commands/cmd_process.py b/src/aiida/cmdline/_commands/cmd_process.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_process.py rename to src/aiida/cmdline/_commands/cmd_process.py diff --git a/src/aiida/cmdline/commands/cmd_profile.py b/src/aiida/cmdline/_commands/cmd_profile.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_profile.py rename to src/aiida/cmdline/_commands/cmd_profile.py diff --git a/src/aiida/cmdline/commands/cmd_rabbitmq.py b/src/aiida/cmdline/_commands/cmd_rabbitmq.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_rabbitmq.py rename to src/aiida/cmdline/_commands/cmd_rabbitmq.py diff --git a/src/aiida/cmdline/commands/cmd_restapi.py b/src/aiida/cmdline/_commands/cmd_restapi.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_restapi.py rename to 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b/src/aiida/cmdline/_commands/cmd_storage.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_storage.py rename to src/aiida/cmdline/_commands/cmd_storage.py diff --git a/src/aiida/cmdline/commands/cmd_user.py b/src/aiida/cmdline/_commands/cmd_user.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_user.py rename to src/aiida/cmdline/_commands/cmd_user.py diff --git a/src/aiida/cmdline/commands/cmd_verdi.py b/src/aiida/cmdline/_commands/cmd_verdi.py similarity index 100% rename from src/aiida/cmdline/commands/cmd_verdi.py rename to src/aiida/cmdline/_commands/cmd_verdi.py diff --git a/src/aiida/cmdline/groups/__init__.py b/src/aiida/cmdline/_groups/__init__.py similarity index 100% rename from src/aiida/cmdline/groups/__init__.py rename to src/aiida/cmdline/_groups/__init__.py diff --git a/src/aiida/cmdline/groups/dynamic.py b/src/aiida/cmdline/_groups/dynamic.py similarity index 100% rename from src/aiida/cmdline/groups/dynamic.py rename to src/aiida/cmdline/_groups/dynamic.py diff --git a/src/aiida/cmdline/groups/verdi.py b/src/aiida/cmdline/_groups/verdi.py similarity index 100% rename from src/aiida/cmdline/groups/verdi.py rename to src/aiida/cmdline/_groups/verdi.py diff --git a/src/aiida/cmdline/params/__init__.py b/src/aiida/cmdline/_params/__init__.py similarity index 100% rename from src/aiida/cmdline/params/__init__.py rename to src/aiida/cmdline/_params/__init__.py diff --git a/src/aiida/cmdline/params/arguments/__init__.py b/src/aiida/cmdline/_params/arguments/__init__.py similarity index 100% rename from src/aiida/cmdline/params/arguments/__init__.py rename to src/aiida/cmdline/_params/arguments/__init__.py diff --git a/src/aiida/cmdline/params/arguments/main.py b/src/aiida/cmdline/_params/arguments/main.py similarity index 100% rename from src/aiida/cmdline/params/arguments/main.py rename to src/aiida/cmdline/_params/arguments/main.py diff --git a/src/aiida/cmdline/params/arguments/overridable.py b/src/aiida/cmdline/_params/arguments/overridable.py similarity index 100% rename from src/aiida/cmdline/params/arguments/overridable.py rename to src/aiida/cmdline/_params/arguments/overridable.py diff --git a/src/aiida/cmdline/params/options/__init__.py b/src/aiida/cmdline/_params/options/__init__.py similarity index 100% rename from src/aiida/cmdline/params/options/__init__.py rename to src/aiida/cmdline/_params/options/__init__.py diff --git a/src/aiida/cmdline/params/options/callable.py b/src/aiida/cmdline/_params/options/callable.py similarity index 100% rename from src/aiida/cmdline/params/options/callable.py rename to src/aiida/cmdline/_params/options/callable.py diff --git a/src/aiida/cmdline/params/options/commands/__init__.py b/src/aiida/cmdline/_params/options/commands/__init__.py similarity index 100% rename from src/aiida/cmdline/params/options/commands/__init__.py rename to src/aiida/cmdline/_params/options/commands/__init__.py diff --git a/src/aiida/cmdline/params/options/commands/code.py b/src/aiida/cmdline/_params/options/commands/code.py similarity index 100% rename from src/aiida/cmdline/params/options/commands/code.py rename to src/aiida/cmdline/_params/options/commands/code.py diff --git a/src/aiida/cmdline/params/options/commands/computer.py b/src/aiida/cmdline/_params/options/commands/computer.py similarity index 100% rename from src/aiida/cmdline/params/options/commands/computer.py rename to src/aiida/cmdline/_params/options/commands/computer.py diff --git a/src/aiida/cmdline/params/options/commands/setup.py b/src/aiida/cmdline/_params/options/commands/setup.py similarity index 100% rename from src/aiida/cmdline/params/options/commands/setup.py rename to src/aiida/cmdline/_params/options/commands/setup.py diff --git a/src/aiida/cmdline/params/options/conditional.py b/src/aiida/cmdline/_params/options/conditional.py similarity index 100% rename from src/aiida/cmdline/params/options/conditional.py rename to 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src/aiida/cmdline/_params/options/multivalue.py diff --git a/src/aiida/cmdline/params/options/overridable.py b/src/aiida/cmdline/_params/options/overridable.py similarity index 100% rename from src/aiida/cmdline/params/options/overridable.py rename to src/aiida/cmdline/_params/options/overridable.py diff --git a/src/aiida/cmdline/params/types/__init__.py b/src/aiida/cmdline/_params/types/__init__.py similarity index 100% rename from src/aiida/cmdline/params/types/__init__.py rename to src/aiida/cmdline/_params/types/__init__.py diff --git a/src/aiida/cmdline/params/types/calculation.py b/src/aiida/cmdline/_params/types/calculation.py similarity index 100% rename from src/aiida/cmdline/params/types/calculation.py rename to src/aiida/cmdline/_params/types/calculation.py diff --git a/src/aiida/cmdline/params/types/choice.py b/src/aiida/cmdline/_params/types/choice.py similarity index 100% rename from src/aiida/cmdline/params/types/choice.py rename to src/aiida/cmdline/_params/types/choice.py diff --git a/src/aiida/cmdline/params/types/code.py b/src/aiida/cmdline/_params/types/code.py similarity index 100% rename from src/aiida/cmdline/params/types/code.py rename to src/aiida/cmdline/_params/types/code.py diff --git a/src/aiida/cmdline/params/types/computer.py b/src/aiida/cmdline/_params/types/computer.py similarity index 100% rename from src/aiida/cmdline/params/types/computer.py rename to src/aiida/cmdline/_params/types/computer.py diff --git a/src/aiida/cmdline/params/types/config.py b/src/aiida/cmdline/_params/types/config.py similarity index 100% rename from src/aiida/cmdline/params/types/config.py rename to src/aiida/cmdline/_params/types/config.py diff --git a/src/aiida/cmdline/params/types/data.py b/src/aiida/cmdline/_params/types/data.py similarity index 100% rename from src/aiida/cmdline/params/types/data.py rename to src/aiida/cmdline/_params/types/data.py diff --git a/src/aiida/cmdline/params/types/group.py b/src/aiida/cmdline/_params/types/group.py similarity index 100% rename from src/aiida/cmdline/params/types/group.py rename to src/aiida/cmdline/_params/types/group.py diff --git a/src/aiida/cmdline/params/types/identifier.py b/src/aiida/cmdline/_params/types/identifier.py similarity index 100% rename from src/aiida/cmdline/params/types/identifier.py rename to src/aiida/cmdline/_params/types/identifier.py diff --git a/src/aiida/cmdline/params/types/multiple.py b/src/aiida/cmdline/_params/types/multiple.py similarity index 100% rename from src/aiida/cmdline/params/types/multiple.py rename to src/aiida/cmdline/_params/types/multiple.py diff --git a/src/aiida/cmdline/params/types/node.py b/src/aiida/cmdline/_params/types/node.py similarity index 100% rename from src/aiida/cmdline/params/types/node.py rename to src/aiida/cmdline/_params/types/node.py diff --git a/src/aiida/cmdline/params/types/path.py b/src/aiida/cmdline/_params/types/path.py similarity index 100% rename from src/aiida/cmdline/params/types/path.py rename to src/aiida/cmdline/_params/types/path.py diff --git a/src/aiida/cmdline/params/types/plugin.py b/src/aiida/cmdline/_params/types/plugin.py similarity index 100% rename from src/aiida/cmdline/params/types/plugin.py rename to src/aiida/cmdline/_params/types/plugin.py diff --git a/src/aiida/cmdline/params/types/process.py b/src/aiida/cmdline/_params/types/process.py similarity index 100% rename from src/aiida/cmdline/params/types/process.py rename to src/aiida/cmdline/_params/types/process.py diff --git a/src/aiida/cmdline/params/types/profile.py b/src/aiida/cmdline/_params/types/profile.py similarity index 100% rename from src/aiida/cmdline/params/types/profile.py rename to src/aiida/cmdline/_params/types/profile.py diff --git a/src/aiida/cmdline/params/types/strings.py b/src/aiida/cmdline/_params/types/strings.py similarity index 100% rename from src/aiida/cmdline/params/types/strings.py rename to src/aiida/cmdline/_params/types/strings.py diff --git a/src/aiida/cmdline/params/types/user.py b/src/aiida/cmdline/_params/types/user.py similarity index 100% rename from src/aiida/cmdline/params/types/user.py rename to src/aiida/cmdline/_params/types/user.py diff --git a/src/aiida/cmdline/params/types/workflow.py b/src/aiida/cmdline/_params/types/workflow.py similarity index 100% rename from src/aiida/cmdline/params/types/workflow.py rename to src/aiida/cmdline/_params/types/workflow.py diff --git a/src/aiida/cmdline/templates/deprecated.tpl b/src/aiida/cmdline/_templates/deprecated.tpl similarity index 100% rename from src/aiida/cmdline/templates/deprecated.tpl rename to src/aiida/cmdline/_templates/deprecated.tpl diff --git a/src/aiida/cmdline/templates/multiline.tpl b/src/aiida/cmdline/_templates/multiline.tpl similarity index 100% rename from src/aiida/cmdline/templates/multiline.tpl rename to src/aiida/cmdline/_templates/multiline.tpl diff --git a/src/aiida/cmdline/templates/new_cmt.txt.tpl b/src/aiida/cmdline/_templates/new_cmt.txt.tpl similarity index 100% rename from src/aiida/cmdline/templates/new_cmt.txt.tpl rename to src/aiida/cmdline/_templates/new_cmt.txt.tpl diff --git a/src/aiida/cmdline/templates/warning.tpl b/src/aiida/cmdline/_templates/warning.tpl similarity index 100% rename from src/aiida/cmdline/templates/warning.tpl rename to src/aiida/cmdline/_templates/warning.tpl diff --git a/src/aiida/cmdline/utils/__init__.py b/src/aiida/cmdline/_utils/__init__.py similarity index 100% rename from src/aiida/cmdline/utils/__init__.py rename to src/aiida/cmdline/_utils/__init__.py diff --git a/src/aiida/cmdline/utils/ascii_vis.py b/src/aiida/cmdline/_utils/ascii_vis.py similarity index 100% rename from src/aiida/cmdline/utils/ascii_vis.py rename to src/aiida/cmdline/_utils/ascii_vis.py diff --git a/src/aiida/cmdline/utils/common.py b/src/aiida/cmdline/_utils/common.py similarity index 100% rename from src/aiida/cmdline/utils/common.py rename to src/aiida/cmdline/_utils/common.py diff --git a/src/aiida/cmdline/utils/decorators.py b/src/aiida/cmdline/_utils/decorators.py similarity index 100% rename from src/aiida/cmdline/utils/decorators.py rename to src/aiida/cmdline/_utils/decorators.py diff --git a/src/aiida/cmdline/utils/defaults.py b/src/aiida/cmdline/_utils/defaults.py similarity index 100% rename from src/aiida/cmdline/utils/defaults.py rename to src/aiida/cmdline/_utils/defaults.py diff --git a/src/aiida/cmdline/utils/echo.py b/src/aiida/cmdline/_utils/echo.py similarity index 100% rename from src/aiida/cmdline/utils/echo.py rename to src/aiida/cmdline/_utils/echo.py diff --git a/src/aiida/cmdline/utils/log.py b/src/aiida/cmdline/_utils/log.py similarity index 100% rename from src/aiida/cmdline/utils/log.py rename to src/aiida/cmdline/_utils/log.py diff --git a/src/aiida/cmdline/utils/multi_line_input.py b/src/aiida/cmdline/_utils/multi_line_input.py similarity index 100% rename from src/aiida/cmdline/utils/multi_line_input.py rename to src/aiida/cmdline/_utils/multi_line_input.py diff --git a/src/aiida/cmdline/utils/pluginable.py b/src/aiida/cmdline/_utils/pluginable.py similarity index 100% rename from src/aiida/cmdline/utils/pluginable.py rename to src/aiida/cmdline/_utils/pluginable.py diff --git a/src/aiida/cmdline/utils/query/__init__.py b/src/aiida/cmdline/_utils/query/__init__.py similarity index 100% rename from src/aiida/cmdline/utils/query/__init__.py rename to src/aiida/cmdline/_utils/query/__init__.py diff --git a/src/aiida/cmdline/utils/query/calculation.py b/src/aiida/cmdline/_utils/query/calculation.py similarity index 100% rename from src/aiida/cmdline/utils/query/calculation.py rename to src/aiida/cmdline/_utils/query/calculation.py diff --git a/src/aiida/cmdline/utils/query/formatting.py b/src/aiida/cmdline/_utils/query/formatting.py similarity index 100% rename from src/aiida/cmdline/utils/query/formatting.py rename to src/aiida/cmdline/_utils/query/formatting.py diff --git a/src/aiida/cmdline/utils/query/mapping.py b/src/aiida/cmdline/_utils/query/mapping.py similarity index 100% rename from src/aiida/cmdline/utils/query/mapping.py rename to src/aiida/cmdline/_utils/query/mapping.py diff --git a/src/aiida/cmdline/utils/repository.py b/src/aiida/cmdline/_utils/repository.py similarity index 100% rename from src/aiida/cmdline/utils/repository.py rename to src/aiida/cmdline/_utils/repository.py diff --git a/src/aiida/cmdline/utils/shell.py b/src/aiida/cmdline/_utils/shell.py similarity index 100% rename from src/aiida/cmdline/utils/shell.py rename to src/aiida/cmdline/_utils/shell.py diff --git a/src/aiida/cmdline/utils/templates.py b/src/aiida/cmdline/_utils/templates.py similarity index 100% rename from src/aiida/cmdline/utils/templates.py rename to src/aiida/cmdline/_utils/templates.py diff --git a/src/aiida/common/__init__.py b/src/aiida/common/__init__.py index b6a140a055..e0013e005d 100644 --- a/src/aiida/common/__init__.py +++ b/src/aiida/common/__init__.py @@ -16,12 +16,12 @@ # fmt: off -from .datastructures import * -from .exceptions import * -from .extendeddicts import * -from .links import * -from .log import * -from .progress_reporter import * +from ._datastructures import * +from ._exceptions import * +from ._extendeddicts import * +from ._links import * +from ._log import * +from ._progress_reporter import * __all__ = ( 'AIIDA_LOGGER', diff --git a/src/aiida/common/constants.py b/src/aiida/common/_constants.py similarity index 100% rename from src/aiida/common/constants.py rename to src/aiida/common/_constants.py diff --git a/src/aiida/common/datastructures.py b/src/aiida/common/_datastructures.py similarity index 100% rename from src/aiida/common/datastructures.py rename to src/aiida/common/_datastructures.py diff --git a/src/aiida/common/docs.py b/src/aiida/common/_docs.py similarity index 100% rename from src/aiida/common/docs.py rename to src/aiida/common/_docs.py diff --git a/src/aiida/common/escaping.py b/src/aiida/common/_escaping.py similarity index 100% rename from src/aiida/common/escaping.py rename to src/aiida/common/_escaping.py diff --git a/src/aiida/common/exceptions.py b/src/aiida/common/_exceptions.py similarity index 100% rename from src/aiida/common/exceptions.py rename to src/aiida/common/_exceptions.py diff --git a/src/aiida/common/extendeddicts.py b/src/aiida/common/_extendeddicts.py similarity index 100% rename from src/aiida/common/extendeddicts.py rename to src/aiida/common/_extendeddicts.py diff --git a/src/aiida/common/files.py b/src/aiida/common/_files.py similarity index 100% rename from src/aiida/common/files.py rename to src/aiida/common/_files.py diff --git a/src/aiida/common/folders.py b/src/aiida/common/_folders.py similarity index 100% rename from src/aiida/common/folders.py rename to src/aiida/common/_folders.py diff --git a/src/aiida/common/hashing.py b/src/aiida/common/_hashing.py similarity index 100% rename from src/aiida/common/hashing.py rename to src/aiida/common/_hashing.py diff --git a/src/aiida/common/json.py b/src/aiida/common/_json.py similarity index 100% rename from src/aiida/common/json.py rename to src/aiida/common/_json.py diff --git a/src/aiida/common/lang.py b/src/aiida/common/_lang.py similarity index 100% rename from src/aiida/common/lang.py rename to src/aiida/common/_lang.py diff --git a/src/aiida/common/links.py b/src/aiida/common/_links.py similarity index 100% rename from src/aiida/common/links.py rename to src/aiida/common/_links.py diff --git a/src/aiida/common/log.py b/src/aiida/common/_log.py similarity index 100% rename from src/aiida/common/log.py rename to src/aiida/common/_log.py diff --git a/src/aiida/common/progress_reporter.py b/src/aiida/common/_progress_reporter.py similarity index 100% rename from src/aiida/common/progress_reporter.py rename to src/aiida/common/_progress_reporter.py diff --git a/src/aiida/common/pydantic.py b/src/aiida/common/_pydantic.py similarity index 100% rename from src/aiida/common/pydantic.py rename to src/aiida/common/_pydantic.py diff --git a/src/aiida/common/timezone.py b/src/aiida/common/_timezone.py similarity index 100% rename from src/aiida/common/timezone.py rename to src/aiida/common/_timezone.py diff --git a/src/aiida/common/utils.py b/src/aiida/common/_utils.py similarity index 100% rename from src/aiida/common/utils.py rename to src/aiida/common/_utils.py diff --git a/src/aiida/common/warnings.py b/src/aiida/common/_warnings.py similarity index 100% rename from src/aiida/common/warnings.py rename to src/aiida/common/_warnings.py diff --git a/src/aiida/engine/__init__.py b/src/aiida/engine/__init__.py index b9e0077cd2..6cf43a7432 100644 --- a/src/aiida/engine/__init__.py +++ b/src/aiida/engine/__init__.py @@ -12,13 +12,13 @@ # fmt: off -from .daemon import * -from .exceptions import * -from .launch import * -from .persistence import * -from .processes import * -from .runners import * -from .utils import * +from ._daemon import * +from ._exceptions import * +from ._launch import * +from ._persistence import * +from ._processes import * +from ._runners import * +from ._utils import * __all__ = ( 'AiiDAPersister', diff --git a/src/aiida/engine/daemon/__init__.py b/src/aiida/engine/_daemon/__init__.py similarity index 100% rename from src/aiida/engine/daemon/__init__.py rename to src/aiida/engine/_daemon/__init__.py diff --git a/src/aiida/engine/daemon/client.py b/src/aiida/engine/_daemon/client.py similarity index 100% rename from src/aiida/engine/daemon/client.py rename to src/aiida/engine/_daemon/client.py diff --git a/src/aiida/engine/daemon/execmanager.py b/src/aiida/engine/_daemon/execmanager.py similarity index 100% rename from src/aiida/engine/daemon/execmanager.py rename to src/aiida/engine/_daemon/execmanager.py diff --git a/src/aiida/engine/daemon/worker.py b/src/aiida/engine/_daemon/worker.py similarity index 100% rename from src/aiida/engine/daemon/worker.py rename to src/aiida/engine/_daemon/worker.py diff --git a/src/aiida/engine/exceptions.py b/src/aiida/engine/_exceptions.py similarity index 100% rename from src/aiida/engine/exceptions.py rename to src/aiida/engine/_exceptions.py diff --git a/src/aiida/engine/launch.py b/src/aiida/engine/_launch.py similarity index 100% rename from src/aiida/engine/launch.py rename to src/aiida/engine/_launch.py diff --git a/src/aiida/engine/persistence.py b/src/aiida/engine/_persistence.py similarity index 100% rename from src/aiida/engine/persistence.py rename to src/aiida/engine/_persistence.py diff --git a/src/aiida/engine/processes/__init__.py b/src/aiida/engine/_processes/__init__.py similarity index 100% rename from src/aiida/engine/processes/__init__.py rename to src/aiida/engine/_processes/__init__.py diff --git a/src/aiida/engine/processes/builder.py b/src/aiida/engine/_processes/builder.py similarity index 100% rename from src/aiida/engine/processes/builder.py rename to src/aiida/engine/_processes/builder.py diff --git a/src/aiida/engine/processes/calcjobs/__init__.py b/src/aiida/engine/_processes/calcjobs/__init__.py similarity index 100% rename from src/aiida/engine/processes/calcjobs/__init__.py rename to src/aiida/engine/_processes/calcjobs/__init__.py diff --git a/src/aiida/engine/processes/calcjobs/calcjob.py b/src/aiida/engine/_processes/calcjobs/calcjob.py similarity index 100% rename from src/aiida/engine/processes/calcjobs/calcjob.py rename to src/aiida/engine/_processes/calcjobs/calcjob.py diff --git a/src/aiida/engine/processes/calcjobs/importer.py b/src/aiida/engine/_processes/calcjobs/importer.py similarity index 100% rename from src/aiida/engine/processes/calcjobs/importer.py rename to src/aiida/engine/_processes/calcjobs/importer.py diff --git a/src/aiida/engine/processes/calcjobs/manager.py b/src/aiida/engine/_processes/calcjobs/manager.py similarity index 100% rename from src/aiida/engine/processes/calcjobs/manager.py rename to src/aiida/engine/_processes/calcjobs/manager.py diff --git a/src/aiida/engine/processes/calcjobs/monitors.py b/src/aiida/engine/_processes/calcjobs/monitors.py similarity index 100% rename from src/aiida/engine/processes/calcjobs/monitors.py rename to src/aiida/engine/_processes/calcjobs/monitors.py diff --git a/src/aiida/engine/processes/calcjobs/tasks.py b/src/aiida/engine/_processes/calcjobs/tasks.py similarity index 100% rename from src/aiida/engine/processes/calcjobs/tasks.py rename to src/aiida/engine/_processes/calcjobs/tasks.py diff --git a/src/aiida/engine/processes/control.py b/src/aiida/engine/_processes/control.py similarity index 100% rename from src/aiida/engine/processes/control.py rename to src/aiida/engine/_processes/control.py diff --git a/src/aiida/engine/processes/exit_code.py b/src/aiida/engine/_processes/exit_code.py similarity index 100% rename from src/aiida/engine/processes/exit_code.py rename to src/aiida/engine/_processes/exit_code.py diff --git a/src/aiida/engine/processes/functions.py b/src/aiida/engine/_processes/functions.py similarity index 100% rename from src/aiida/engine/processes/functions.py rename to src/aiida/engine/_processes/functions.py diff --git a/src/aiida/engine/processes/futures.py b/src/aiida/engine/_processes/futures.py similarity index 100% rename from src/aiida/engine/processes/futures.py rename to src/aiida/engine/_processes/futures.py diff --git a/src/aiida/engine/processes/launcher.py b/src/aiida/engine/_processes/launcher.py similarity index 100% rename from src/aiida/engine/processes/launcher.py rename to src/aiida/engine/_processes/launcher.py diff --git a/src/aiida/engine/processes/ports.py b/src/aiida/engine/_processes/ports.py similarity index 100% rename from src/aiida/engine/processes/ports.py rename to src/aiida/engine/_processes/ports.py diff --git a/src/aiida/engine/processes/process.py b/src/aiida/engine/_processes/process.py similarity index 100% rename from src/aiida/engine/processes/process.py rename to src/aiida/engine/_processes/process.py diff --git a/src/aiida/engine/processes/process_spec.py b/src/aiida/engine/_processes/process_spec.py similarity index 100% rename from src/aiida/engine/processes/process_spec.py rename to src/aiida/engine/_processes/process_spec.py diff --git a/src/aiida/engine/processes/utils.py b/src/aiida/engine/_processes/utils.py similarity index 100% rename from src/aiida/engine/processes/utils.py rename to src/aiida/engine/_processes/utils.py diff --git a/src/aiida/engine/processes/workchains/__init__.py b/src/aiida/engine/_processes/workchains/__init__.py similarity index 100% rename from src/aiida/engine/processes/workchains/__init__.py rename to src/aiida/engine/_processes/workchains/__init__.py diff --git a/src/aiida/engine/processes/workchains/awaitable.py b/src/aiida/engine/_processes/workchains/awaitable.py similarity index 100% rename from src/aiida/engine/processes/workchains/awaitable.py rename to src/aiida/engine/_processes/workchains/awaitable.py diff --git a/src/aiida/engine/processes/workchains/context.py b/src/aiida/engine/_processes/workchains/context.py similarity index 100% rename from src/aiida/engine/processes/workchains/context.py rename to src/aiida/engine/_processes/workchains/context.py diff --git a/src/aiida/engine/processes/workchains/restart.py b/src/aiida/engine/_processes/workchains/restart.py similarity index 100% rename from src/aiida/engine/processes/workchains/restart.py rename to src/aiida/engine/_processes/workchains/restart.py diff --git a/src/aiida/engine/processes/workchains/utils.py b/src/aiida/engine/_processes/workchains/utils.py similarity index 100% rename from src/aiida/engine/processes/workchains/utils.py rename to src/aiida/engine/_processes/workchains/utils.py diff --git a/src/aiida/engine/processes/workchains/workchain.py b/src/aiida/engine/_processes/workchains/workchain.py similarity index 100% rename from src/aiida/engine/processes/workchains/workchain.py rename to src/aiida/engine/_processes/workchains/workchain.py diff --git a/src/aiida/engine/runners.py b/src/aiida/engine/_runners.py similarity index 100% rename from src/aiida/engine/runners.py rename to src/aiida/engine/_runners.py diff --git a/src/aiida/engine/transports.py b/src/aiida/engine/_transports.py similarity index 100% rename from src/aiida/engine/transports.py rename to src/aiida/engine/_transports.py diff --git a/src/aiida/engine/utils.py b/src/aiida/engine/_utils.py similarity index 100% rename from src/aiida/engine/utils.py rename to src/aiida/engine/_utils.py diff --git a/src/aiida/manage/__init__.py b/src/aiida/manage/__init__.py index e5ff00cbdb..d8dcea80ea 100644 --- a/src/aiida/manage/__init__.py +++ b/src/aiida/manage/__init__.py @@ -22,10 +22,10 @@ # fmt: off -from .caching import * -from .configuration import * -from .external import * -from .manager import * +from ._caching import * +from ._configuration import * +from ._external import * +from ._manager import * __all__ = ( 'CURRENT_CONFIG_VERSION', diff --git a/src/aiida/manage/caching.py b/src/aiida/manage/_caching.py similarity index 100% rename from src/aiida/manage/caching.py rename to src/aiida/manage/_caching.py diff --git a/src/aiida/manage/configuration/__init__.py b/src/aiida/manage/_configuration/__init__.py similarity index 100% rename from src/aiida/manage/configuration/__init__.py rename to src/aiida/manage/_configuration/__init__.py diff --git a/src/aiida/manage/configuration/config.py b/src/aiida/manage/_configuration/config.py similarity index 100% rename from src/aiida/manage/configuration/config.py rename to src/aiida/manage/_configuration/config.py diff --git a/src/aiida/manage/configuration/migrations/__init__.py b/src/aiida/manage/_configuration/migrations/__init__.py similarity index 100% rename from src/aiida/manage/configuration/migrations/__init__.py rename to src/aiida/manage/_configuration/migrations/__init__.py diff --git a/src/aiida/manage/configuration/migrations/migrations.py b/src/aiida/manage/_configuration/migrations/migrations.py similarity index 100% rename from src/aiida/manage/configuration/migrations/migrations.py rename to src/aiida/manage/_configuration/migrations/migrations.py diff --git a/src/aiida/manage/configuration/options.py b/src/aiida/manage/_configuration/options.py similarity index 100% rename from src/aiida/manage/configuration/options.py rename to src/aiida/manage/_configuration/options.py diff --git a/src/aiida/manage/configuration/profile.py b/src/aiida/manage/_configuration/profile.py similarity index 100% rename from src/aiida/manage/configuration/profile.py rename to src/aiida/manage/_configuration/profile.py diff --git a/src/aiida/manage/configuration/schema/__init__.py b/src/aiida/manage/_configuration/schema/__init__.py similarity index 100% rename from src/aiida/manage/configuration/schema/__init__.py rename to src/aiida/manage/_configuration/schema/__init__.py diff --git a/src/aiida/manage/configuration/schema/config-v5.schema.json b/src/aiida/manage/_configuration/schema/config-v5.schema.json similarity index 100% rename from src/aiida/manage/configuration/schema/config-v5.schema.json rename to src/aiida/manage/_configuration/schema/config-v5.schema.json diff --git a/src/aiida/manage/configuration/schema/config-v6.schema.json b/src/aiida/manage/_configuration/schema/config-v6.schema.json similarity index 100% rename from src/aiida/manage/configuration/schema/config-v6.schema.json rename to src/aiida/manage/_configuration/schema/config-v6.schema.json diff --git a/src/aiida/manage/configuration/schema/config-v7.schema.json b/src/aiida/manage/_configuration/schema/config-v7.schema.json similarity index 100% rename from src/aiida/manage/configuration/schema/config-v7.schema.json rename to src/aiida/manage/_configuration/schema/config-v7.schema.json diff --git a/src/aiida/manage/configuration/schema/config-v8.schema.json b/src/aiida/manage/_configuration/schema/config-v8.schema.json similarity index 100% rename from src/aiida/manage/configuration/schema/config-v8.schema.json rename to src/aiida/manage/_configuration/schema/config-v8.schema.json diff --git a/src/aiida/manage/configuration/schema/config-v9.schema.json b/src/aiida/manage/_configuration/schema/config-v9.schema.json similarity index 100% rename from src/aiida/manage/configuration/schema/config-v9.schema.json rename to src/aiida/manage/_configuration/schema/config-v9.schema.json diff --git a/src/aiida/manage/configuration/settings.py b/src/aiida/manage/_configuration/settings.py similarity index 100% rename from src/aiida/manage/configuration/settings.py rename to src/aiida/manage/_configuration/settings.py diff --git a/src/aiida/manage/external/__init__.py b/src/aiida/manage/_external/__init__.py similarity index 100% rename from src/aiida/manage/external/__init__.py rename to src/aiida/manage/_external/__init__.py diff --git a/src/aiida/manage/external/postgres.py b/src/aiida/manage/_external/postgres.py similarity index 100% rename from src/aiida/manage/external/postgres.py rename to src/aiida/manage/_external/postgres.py diff --git a/src/aiida/manage/manager.py b/src/aiida/manage/_manager.py similarity index 100% rename from src/aiida/manage/manager.py rename to src/aiida/manage/_manager.py diff --git a/src/aiida/manage/profile_access.py b/src/aiida/manage/_profile_access.py similarity index 100% rename from src/aiida/manage/profile_access.py rename to src/aiida/manage/_profile_access.py diff --git a/src/aiida/manage/tests/__init__.py b/src/aiida/manage/_tests/__init__.py similarity index 100% rename from src/aiida/manage/tests/__init__.py rename to src/aiida/manage/_tests/__init__.py diff --git a/src/aiida/manage/tests/pytest_fixtures.py b/src/aiida/manage/_tests/pytest_fixtures.py similarity index 100% rename from src/aiida/manage/tests/pytest_fixtures.py rename to src/aiida/manage/_tests/pytest_fixtures.py diff --git a/src/aiida/orm/__init__.py b/src/aiida/orm/__init__.py index 2e1fe9618d..89d5b0ee20 100644 --- a/src/aiida/orm/__init__.py +++ b/src/aiida/orm/__init__.py @@ -12,18 +12,18 @@ # fmt: off -from .authinfos import * -from .comments import * -from .computers import * -from .entities import * -from .extras import * -from .fields import * -from .groups import * -from .logs import * -from .nodes import * -from .querybuilder import * -from .users import * -from .utils import * +from ._authinfos import * +from ._comments import * +from ._computers import * +from ._entities import * +from ._extras import * +from ._fields import * +from ._groups import * +from ._logs import * +from ._nodes import * +from ._querybuilder import * +from ._users import * +from ._utils import * __all__ = ( 'ASCENDING', diff --git a/src/aiida/orm/authinfos.py b/src/aiida/orm/_authinfos.py similarity index 100% rename from src/aiida/orm/authinfos.py rename to src/aiida/orm/_authinfos.py diff --git a/src/aiida/orm/autogroup.py b/src/aiida/orm/_autogroup.py similarity index 100% rename from src/aiida/orm/autogroup.py rename to src/aiida/orm/_autogroup.py diff --git a/src/aiida/orm/comments.py b/src/aiida/orm/_comments.py similarity index 100% rename from src/aiida/orm/comments.py rename to src/aiida/orm/_comments.py diff --git a/src/aiida/orm/computers.py b/src/aiida/orm/_computers.py similarity index 100% rename from src/aiida/orm/computers.py rename to src/aiida/orm/_computers.py diff --git a/src/aiida/orm/convert.py b/src/aiida/orm/_convert.py similarity index 100% rename from src/aiida/orm/convert.py rename to src/aiida/orm/_convert.py diff --git a/src/aiida/orm/entities.py b/src/aiida/orm/_entities.py similarity index 100% rename from src/aiida/orm/entities.py rename to src/aiida/orm/_entities.py diff --git a/src/aiida/orm/extras.py b/src/aiida/orm/_extras.py similarity index 100% rename from src/aiida/orm/extras.py rename to src/aiida/orm/_extras.py diff --git a/src/aiida/orm/fields.py b/src/aiida/orm/_fields.py similarity index 100% rename from src/aiida/orm/fields.py rename to src/aiida/orm/_fields.py diff --git a/src/aiida/orm/groups.py b/src/aiida/orm/_groups.py similarity index 100% rename from src/aiida/orm/groups.py rename to src/aiida/orm/_groups.py diff --git a/src/aiida/orm/implementation/__init__.py b/src/aiida/orm/_implementation/__init__.py similarity index 100% rename from src/aiida/orm/implementation/__init__.py rename to src/aiida/orm/_implementation/__init__.py diff --git a/src/aiida/orm/implementation/authinfos.py b/src/aiida/orm/_implementation/authinfos.py similarity index 100% rename from src/aiida/orm/implementation/authinfos.py rename to src/aiida/orm/_implementation/authinfos.py diff --git a/src/aiida/orm/implementation/comments.py b/src/aiida/orm/_implementation/comments.py similarity index 100% rename from src/aiida/orm/implementation/comments.py rename to src/aiida/orm/_implementation/comments.py diff --git a/src/aiida/orm/implementation/computers.py b/src/aiida/orm/_implementation/computers.py similarity index 100% rename from src/aiida/orm/implementation/computers.py rename to src/aiida/orm/_implementation/computers.py diff --git a/src/aiida/orm/implementation/entities.py b/src/aiida/orm/_implementation/entities.py similarity index 100% rename from src/aiida/orm/implementation/entities.py rename to src/aiida/orm/_implementation/entities.py diff --git a/src/aiida/orm/implementation/groups.py b/src/aiida/orm/_implementation/groups.py similarity index 100% rename from src/aiida/orm/implementation/groups.py rename to src/aiida/orm/_implementation/groups.py diff --git a/src/aiida/orm/implementation/logs.py b/src/aiida/orm/_implementation/logs.py similarity index 100% rename from src/aiida/orm/implementation/logs.py rename to src/aiida/orm/_implementation/logs.py diff --git a/src/aiida/orm/implementation/nodes.py b/src/aiida/orm/_implementation/nodes.py similarity index 100% rename from src/aiida/orm/implementation/nodes.py rename to src/aiida/orm/_implementation/nodes.py diff --git a/src/aiida/orm/implementation/querybuilder.py b/src/aiida/orm/_implementation/querybuilder.py similarity index 100% rename from src/aiida/orm/implementation/querybuilder.py rename to src/aiida/orm/_implementation/querybuilder.py diff --git a/src/aiida/orm/implementation/storage_backend.py b/src/aiida/orm/_implementation/storage_backend.py similarity index 100% rename from src/aiida/orm/implementation/storage_backend.py rename to src/aiida/orm/_implementation/storage_backend.py diff --git a/src/aiida/orm/implementation/users.py b/src/aiida/orm/_implementation/users.py similarity index 100% rename from src/aiida/orm/implementation/users.py rename to src/aiida/orm/_implementation/users.py diff --git a/src/aiida/orm/implementation/utils.py b/src/aiida/orm/_implementation/utils.py similarity index 100% rename from src/aiida/orm/implementation/utils.py rename to src/aiida/orm/_implementation/utils.py diff --git a/src/aiida/orm/logs.py b/src/aiida/orm/_logs.py similarity index 100% rename from src/aiida/orm/logs.py rename to src/aiida/orm/_logs.py diff --git a/src/aiida/orm/nodes/__init__.py b/src/aiida/orm/_nodes/__init__.py similarity index 100% rename from src/aiida/orm/nodes/__init__.py rename to src/aiida/orm/_nodes/__init__.py diff --git a/src/aiida/orm/nodes/attributes.py b/src/aiida/orm/_nodes/attributes.py similarity index 100% rename from src/aiida/orm/nodes/attributes.py rename to src/aiida/orm/_nodes/attributes.py diff --git a/src/aiida/orm/nodes/caching.py b/src/aiida/orm/_nodes/caching.py similarity index 100% rename from src/aiida/orm/nodes/caching.py rename to src/aiida/orm/_nodes/caching.py diff --git a/src/aiida/orm/nodes/comments.py b/src/aiida/orm/_nodes/comments.py similarity index 100% rename from src/aiida/orm/nodes/comments.py rename to src/aiida/orm/_nodes/comments.py diff --git a/src/aiida/orm/nodes/data/__init__.py b/src/aiida/orm/_nodes/data/__init__.py similarity index 100% rename from src/aiida/orm/nodes/data/__init__.py rename to src/aiida/orm/_nodes/data/__init__.py diff --git a/src/aiida/orm/nodes/data/array/__init__.py b/src/aiida/orm/_nodes/data/array/__init__.py similarity index 100% rename from src/aiida/orm/nodes/data/array/__init__.py rename to src/aiida/orm/_nodes/data/array/__init__.py diff --git a/src/aiida/orm/nodes/data/array/array.py b/src/aiida/orm/_nodes/data/array/array.py similarity index 100% rename from src/aiida/orm/nodes/data/array/array.py rename to src/aiida/orm/_nodes/data/array/array.py diff --git a/src/aiida/orm/nodes/data/array/bands.py b/src/aiida/orm/_nodes/data/array/bands.py similarity index 100% rename from src/aiida/orm/nodes/data/array/bands.py rename to src/aiida/orm/_nodes/data/array/bands.py diff --git a/src/aiida/orm/nodes/data/array/kpoints.py b/src/aiida/orm/_nodes/data/array/kpoints.py similarity index 100% rename from src/aiida/orm/nodes/data/array/kpoints.py rename to src/aiida/orm/_nodes/data/array/kpoints.py diff --git a/src/aiida/orm/nodes/data/array/projection.py b/src/aiida/orm/_nodes/data/array/projection.py similarity index 100% rename from src/aiida/orm/nodes/data/array/projection.py rename to src/aiida/orm/_nodes/data/array/projection.py diff --git a/src/aiida/orm/nodes/data/array/trajectory.py b/src/aiida/orm/_nodes/data/array/trajectory.py similarity index 100% rename from src/aiida/orm/nodes/data/array/trajectory.py rename to src/aiida/orm/_nodes/data/array/trajectory.py diff --git a/src/aiida/orm/nodes/data/array/xy.py b/src/aiida/orm/_nodes/data/array/xy.py similarity index 100% rename from src/aiida/orm/nodes/data/array/xy.py rename to src/aiida/orm/_nodes/data/array/xy.py diff --git a/src/aiida/orm/nodes/data/base.py b/src/aiida/orm/_nodes/data/base.py similarity index 100% rename from src/aiida/orm/nodes/data/base.py rename to src/aiida/orm/_nodes/data/base.py diff --git a/src/aiida/orm/nodes/data/bool.py b/src/aiida/orm/_nodes/data/bool.py similarity index 100% rename from src/aiida/orm/nodes/data/bool.py rename to src/aiida/orm/_nodes/data/bool.py diff --git a/src/aiida/orm/nodes/data/cif.py b/src/aiida/orm/_nodes/data/cif.py similarity index 100% rename from src/aiida/orm/nodes/data/cif.py rename to src/aiida/orm/_nodes/data/cif.py diff --git a/src/aiida/orm/nodes/data/code/__init__.py b/src/aiida/orm/_nodes/data/code/__init__.py similarity index 100% rename from src/aiida/orm/nodes/data/code/__init__.py rename to src/aiida/orm/_nodes/data/code/__init__.py diff --git a/src/aiida/orm/nodes/data/code/abstract.py b/src/aiida/orm/_nodes/data/code/abstract.py similarity index 100% rename from src/aiida/orm/nodes/data/code/abstract.py rename to src/aiida/orm/_nodes/data/code/abstract.py diff --git a/src/aiida/orm/nodes/data/code/containerized.py b/src/aiida/orm/_nodes/data/code/containerized.py similarity index 100% rename from src/aiida/orm/nodes/data/code/containerized.py rename to src/aiida/orm/_nodes/data/code/containerized.py diff --git a/src/aiida/orm/nodes/data/code/installed.py b/src/aiida/orm/_nodes/data/code/installed.py similarity index 100% rename from src/aiida/orm/nodes/data/code/installed.py rename to src/aiida/orm/_nodes/data/code/installed.py diff --git a/src/aiida/orm/nodes/data/code/legacy.py b/src/aiida/orm/_nodes/data/code/legacy.py similarity index 100% rename from src/aiida/orm/nodes/data/code/legacy.py rename to src/aiida/orm/_nodes/data/code/legacy.py diff --git a/src/aiida/orm/nodes/data/code/portable.py b/src/aiida/orm/_nodes/data/code/portable.py similarity index 100% rename from src/aiida/orm/nodes/data/code/portable.py rename to src/aiida/orm/_nodes/data/code/portable.py diff --git a/src/aiida/orm/nodes/data/data.py b/src/aiida/orm/_nodes/data/data.py similarity index 100% rename from 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src/aiida/orm/_utils/log.py diff --git a/src/aiida/orm/utils/managers.py b/src/aiida/orm/_utils/managers.py similarity index 100% rename from src/aiida/orm/utils/managers.py rename to src/aiida/orm/_utils/managers.py diff --git a/src/aiida/orm/utils/mixins.py b/src/aiida/orm/_utils/mixins.py similarity index 100% rename from src/aiida/orm/utils/mixins.py rename to src/aiida/orm/_utils/mixins.py diff --git a/src/aiida/orm/utils/node.py b/src/aiida/orm/_utils/node.py similarity index 100% rename from src/aiida/orm/utils/node.py rename to src/aiida/orm/_utils/node.py diff --git a/src/aiida/orm/utils/remote.py b/src/aiida/orm/_utils/remote.py similarity index 100% rename from src/aiida/orm/utils/remote.py rename to src/aiida/orm/_utils/remote.py diff --git a/src/aiida/orm/utils/serialize.py b/src/aiida/orm/_utils/serialize.py similarity index 100% rename from src/aiida/orm/utils/serialize.py rename to src/aiida/orm/_utils/serialize.py diff --git a/src/aiida/parsers/__init__.py b/src/aiida/parsers/__init__.py index 6aee3b023f..93c5777a7c 100644 --- a/src/aiida/parsers/__init__.py +++ b/src/aiida/parsers/__init__.py @@ -12,7 +12,7 @@ # fmt: off -from .parser import * +from ._parser import * __all__ = ( 'Parser', diff --git a/src/aiida/parsers/parser.py b/src/aiida/parsers/_parser.py similarity index 100% rename from src/aiida/parsers/parser.py rename to src/aiida/parsers/_parser.py diff --git a/src/aiida/parsers/plugins/__init__.py b/src/aiida/parsers/_plugins/__init__.py similarity index 100% rename from src/aiida/parsers/plugins/__init__.py rename to src/aiida/parsers/_plugins/__init__.py diff --git a/src/aiida/parsers/plugins/arithmetic/__init__.py b/src/aiida/parsers/_plugins/arithmetic/__init__.py similarity index 100% rename from src/aiida/parsers/plugins/arithmetic/__init__.py rename to src/aiida/parsers/_plugins/arithmetic/__init__.py diff --git a/src/aiida/parsers/plugins/arithmetic/add.py b/src/aiida/parsers/_plugins/arithmetic/add.py similarity index 100% rename from src/aiida/parsers/plugins/arithmetic/add.py rename to src/aiida/parsers/_plugins/arithmetic/add.py diff --git a/src/aiida/parsers/plugins/diff_tutorial/parsers.py b/src/aiida/parsers/_plugins/diff_tutorial/parsers.py similarity index 100% rename from src/aiida/parsers/plugins/diff_tutorial/parsers.py rename to src/aiida/parsers/_plugins/diff_tutorial/parsers.py diff --git a/src/aiida/parsers/plugins/templatereplacer/__init__.py b/src/aiida/parsers/_plugins/templatereplacer/__init__.py similarity index 100% rename from src/aiida/parsers/plugins/templatereplacer/__init__.py rename to src/aiida/parsers/_plugins/templatereplacer/__init__.py diff --git a/src/aiida/parsers/plugins/templatereplacer/parser.py b/src/aiida/parsers/_plugins/templatereplacer/parser.py similarity index 100% rename from src/aiida/parsers/plugins/templatereplacer/parser.py rename to src/aiida/parsers/_plugins/templatereplacer/parser.py diff --git a/src/aiida/plugins/__init__.py b/src/aiida/plugins/__init__.py index 0884598226..9512c88a50 100644 --- a/src/aiida/plugins/__init__.py +++ b/src/aiida/plugins/__init__.py @@ -12,9 +12,9 @@ # fmt: off -from .entry_point import * -from .factories import * -from .utils import * +from ._entry_point import * +from ._factories import * +from ._utils import * __all__ = ( 'BaseFactory', diff --git a/src/aiida/plugins/entry_point.py b/src/aiida/plugins/_entry_point.py similarity index 100% rename from src/aiida/plugins/entry_point.py rename to src/aiida/plugins/_entry_point.py diff --git a/src/aiida/plugins/factories.py b/src/aiida/plugins/_factories.py similarity index 100% rename from src/aiida/plugins/factories.py rename to src/aiida/plugins/_factories.py diff --git a/src/aiida/plugins/utils.py b/src/aiida/plugins/_utils.py similarity index 100% rename from src/aiida/plugins/utils.py rename to src/aiida/plugins/_utils.py diff --git a/src/aiida/repository/__init__.py b/src/aiida/repository/__init__.py index fc21487fe4..899163b85a 100644 --- a/src/aiida/repository/__init__.py +++ b/src/aiida/repository/__init__.py @@ -12,9 +12,9 @@ # fmt: off -from .backend import * -from .common import * -from .repository import * +from ._backend import * +from ._common import * +from ._repository import * __all__ = ( 'AbstractRepositoryBackend', diff --git a/src/aiida/repository/backend/__init__.py b/src/aiida/repository/_backend/__init__.py similarity index 100% rename from src/aiida/repository/backend/__init__.py rename to src/aiida/repository/_backend/__init__.py diff --git a/src/aiida/repository/backend/abstract.py b/src/aiida/repository/_backend/abstract.py similarity index 100% rename from src/aiida/repository/backend/abstract.py rename to src/aiida/repository/_backend/abstract.py diff --git a/src/aiida/repository/backend/disk_object_store.py b/src/aiida/repository/_backend/disk_object_store.py similarity index 100% rename from src/aiida/repository/backend/disk_object_store.py rename to src/aiida/repository/_backend/disk_object_store.py diff --git a/src/aiida/repository/backend/sandbox.py b/src/aiida/repository/_backend/sandbox.py similarity index 100% rename from src/aiida/repository/backend/sandbox.py rename to src/aiida/repository/_backend/sandbox.py diff --git a/src/aiida/repository/common.py b/src/aiida/repository/_common.py similarity index 100% rename from src/aiida/repository/common.py rename to src/aiida/repository/_common.py diff --git a/src/aiida/repository/repository.py b/src/aiida/repository/_repository.py similarity index 100% rename from src/aiida/repository/repository.py rename to src/aiida/repository/_repository.py diff --git a/src/aiida/restapi/api.py b/src/aiida/restapi/_api.py similarity index 100% rename from src/aiida/restapi/api.py rename to src/aiida/restapi/_api.py diff --git a/src/aiida/restapi/common/__init__.py b/src/aiida/restapi/_common/__init__.py similarity index 100% rename from src/aiida/restapi/common/__init__.py rename to 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src/aiida/restapi/_translator/nodes/process/__init__.py diff --git a/src/aiida/restapi/translator/nodes/process/calculation/__init__.py b/src/aiida/restapi/_translator/nodes/process/calculation/__init__.py similarity index 100% rename from src/aiida/restapi/translator/nodes/process/calculation/__init__.py rename to src/aiida/restapi/_translator/nodes/process/calculation/__init__.py diff --git a/src/aiida/restapi/translator/nodes/process/calculation/calcfunction.py b/src/aiida/restapi/_translator/nodes/process/calculation/calcfunction.py similarity index 100% rename from src/aiida/restapi/translator/nodes/process/calculation/calcfunction.py rename to src/aiida/restapi/_translator/nodes/process/calculation/calcfunction.py diff --git a/src/aiida/restapi/translator/nodes/process/calculation/calcjob.py b/src/aiida/restapi/_translator/nodes/process/calculation/calcjob.py similarity index 100% rename from src/aiida/restapi/translator/nodes/process/calculation/calcjob.py rename to src/aiida/restapi/_translator/nodes/process/calculation/calcjob.py diff --git a/src/aiida/restapi/translator/nodes/process/process.py b/src/aiida/restapi/_translator/nodes/process/process.py similarity index 100% rename from src/aiida/restapi/translator/nodes/process/process.py rename to src/aiida/restapi/_translator/nodes/process/process.py diff --git a/src/aiida/restapi/translator/nodes/process/workflow/__init__.py b/src/aiida/restapi/_translator/nodes/process/workflow/__init__.py similarity index 100% rename from src/aiida/restapi/translator/nodes/process/workflow/__init__.py rename to src/aiida/restapi/_translator/nodes/process/workflow/__init__.py diff --git a/src/aiida/restapi/translator/nodes/process/workflow/workchain.py b/src/aiida/restapi/_translator/nodes/process/workflow/workchain.py similarity index 100% rename from src/aiida/restapi/translator/nodes/process/workflow/workchain.py rename to src/aiida/restapi/_translator/nodes/process/workflow/workchain.py diff --git a/src/aiida/restapi/translator/nodes/process/workflow/workfunction.py b/src/aiida/restapi/_translator/nodes/process/workflow/workfunction.py similarity index 100% rename from src/aiida/restapi/translator/nodes/process/workflow/workfunction.py rename to src/aiida/restapi/_translator/nodes/process/workflow/workfunction.py diff --git a/src/aiida/restapi/translator/user.py b/src/aiida/restapi/_translator/user.py similarity index 100% rename from src/aiida/restapi/translator/user.py rename to src/aiida/restapi/_translator/user.py diff --git a/src/aiida/schedulers/__init__.py b/src/aiida/schedulers/__init__.py index 748e23b5d5..c377903fe2 100644 --- a/src/aiida/schedulers/__init__.py +++ b/src/aiida/schedulers/__init__.py @@ -12,9 +12,9 @@ # fmt: off -from .datastructures import * -from .plugins import * -from .scheduler import * +from ._datastructures import * +from ._plugins import * +from ._scheduler import * __all__ = ( 'BashCliScheduler', diff --git a/src/aiida/schedulers/datastructures.py b/src/aiida/schedulers/_datastructures.py similarity index 100% rename from src/aiida/schedulers/datastructures.py rename to src/aiida/schedulers/_datastructures.py diff --git a/src/aiida/schedulers/plugins/__init__.py b/src/aiida/schedulers/_plugins/__init__.py similarity index 100% rename from src/aiida/schedulers/plugins/__init__.py rename to src/aiida/schedulers/_plugins/__init__.py diff --git a/src/aiida/schedulers/plugins/bash.py b/src/aiida/schedulers/_plugins/bash.py similarity index 100% rename from src/aiida/schedulers/plugins/bash.py rename to src/aiida/schedulers/_plugins/bash.py diff --git a/src/aiida/schedulers/plugins/direct.py b/src/aiida/schedulers/_plugins/direct.py similarity index 100% rename from src/aiida/schedulers/plugins/direct.py rename to src/aiida/schedulers/_plugins/direct.py diff --git a/src/aiida/schedulers/plugins/lsf.py b/src/aiida/schedulers/_plugins/lsf.py similarity index 100% rename from src/aiida/schedulers/plugins/lsf.py rename to src/aiida/schedulers/_plugins/lsf.py diff --git a/src/aiida/schedulers/plugins/pbsbaseclasses.py b/src/aiida/schedulers/_plugins/pbsbaseclasses.py similarity index 100% rename from src/aiida/schedulers/plugins/pbsbaseclasses.py rename to src/aiida/schedulers/_plugins/pbsbaseclasses.py diff --git a/src/aiida/schedulers/plugins/pbspro.py b/src/aiida/schedulers/_plugins/pbspro.py similarity index 100% rename from src/aiida/schedulers/plugins/pbspro.py rename to src/aiida/schedulers/_plugins/pbspro.py diff --git a/src/aiida/schedulers/plugins/sge.py b/src/aiida/schedulers/_plugins/sge.py similarity index 100% rename from src/aiida/schedulers/plugins/sge.py rename to src/aiida/schedulers/_plugins/sge.py diff --git a/src/aiida/schedulers/plugins/slurm.py b/src/aiida/schedulers/_plugins/slurm.py similarity index 100% rename from src/aiida/schedulers/plugins/slurm.py rename to src/aiida/schedulers/_plugins/slurm.py diff --git a/src/aiida/schedulers/plugins/torque.py b/src/aiida/schedulers/_plugins/torque.py similarity index 100% rename from src/aiida/schedulers/plugins/torque.py rename to src/aiida/schedulers/_plugins/torque.py diff --git a/src/aiida/schedulers/scheduler.py b/src/aiida/schedulers/_scheduler.py similarity index 100% rename from src/aiida/schedulers/scheduler.py rename to src/aiida/schedulers/_scheduler.py diff --git a/src/aiida/sphinxext/calcjob.py b/src/aiida/sphinxext/_calcjob.py similarity index 100% rename from src/aiida/sphinxext/calcjob.py rename to src/aiida/sphinxext/_calcjob.py diff --git a/src/aiida/sphinxext/process.py b/src/aiida/sphinxext/_process.py similarity index 100% rename from src/aiida/sphinxext/process.py rename to src/aiida/sphinxext/_process.py diff --git a/src/aiida/sphinxext/workchain.py b/src/aiida/sphinxext/_workchain.py similarity index 100% rename from src/aiida/sphinxext/workchain.py rename to src/aiida/sphinxext/_workchain.py diff --git a/src/aiida/storage/__init__.py b/src/aiida/storage/__init__.py index 0c703704cb..c16cd3e6ab 100644 --- a/src/aiida/storage/__init__.py +++ b/src/aiida/storage/__init__.py @@ -12,7 +12,7 @@ # fmt: off -from .sqlite_dos import * +from ._sqlite_dos import * __all__ = ( 'SqliteDosStorage', diff --git a/src/aiida/storage/log.py b/src/aiida/storage/_log.py similarity index 100% rename from src/aiida/storage/log.py rename to src/aiida/storage/_log.py diff --git a/src/aiida/storage/migrations.py b/src/aiida/storage/_migrations.py similarity index 100% rename from src/aiida/storage/migrations.py rename to src/aiida/storage/_migrations.py diff --git a/src/aiida/storage/psql_dos/__init__.py b/src/aiida/storage/_psql_dos/__init__.py similarity index 100% rename from src/aiida/storage/psql_dos/__init__.py rename to src/aiida/storage/_psql_dos/__init__.py diff --git a/src/aiida/storage/psql_dos/alembic_cli.py b/src/aiida/storage/_psql_dos/alembic_cli.py similarity index 100% rename from src/aiida/storage/psql_dos/alembic_cli.py rename to src/aiida/storage/_psql_dos/alembic_cli.py diff --git a/src/aiida/storage/psql_dos/backend.py b/src/aiida/storage/_psql_dos/backend.py similarity index 100% rename from src/aiida/storage/psql_dos/backend.py rename to src/aiida/storage/_psql_dos/backend.py diff --git a/src/aiida/storage/psql_dos/migrations/__init__.py b/src/aiida/storage/_psql_dos/migrations/__init__.py similarity index 100% rename from src/aiida/storage/psql_dos/migrations/__init__.py rename to src/aiida/storage/_psql_dos/migrations/__init__.py diff --git a/src/aiida/storage/psql_dos/migrations/env.py b/src/aiida/storage/_psql_dos/migrations/env.py similarity index 100% rename from src/aiida/storage/psql_dos/migrations/env.py rename to src/aiida/storage/_psql_dos/migrations/env.py diff --git a/src/aiida/storage/psql_dos/migrations/script.py.mako b/src/aiida/storage/_psql_dos/migrations/script.py.mako similarity index 100% rename from src/aiida/storage/psql_dos/migrations/script.py.mako rename to src/aiida/storage/_psql_dos/migrations/script.py.mako diff --git a/src/aiida/storage/psql_dos/migrations/utils/__init__.py b/src/aiida/storage/_psql_dos/migrations/utils/__init__.py similarity index 100% rename from src/aiida/storage/psql_dos/migrations/utils/__init__.py rename to src/aiida/storage/_psql_dos/migrations/utils/__init__.py diff --git a/src/aiida/storage/psql_dos/migrations/utils/calc_state.py b/src/aiida/storage/_psql_dos/migrations/utils/calc_state.py similarity index 100% rename from src/aiida/storage/psql_dos/migrations/utils/calc_state.py rename to src/aiida/storage/_psql_dos/migrations/utils/calc_state.py diff --git a/src/aiida/storage/psql_dos/migrations/utils/create_dbattribute.py b/src/aiida/storage/_psql_dos/migrations/utils/create_dbattribute.py similarity index 100% rename from src/aiida/storage/psql_dos/migrations/utils/create_dbattribute.py rename to src/aiida/storage/_psql_dos/migrations/utils/create_dbattribute.py diff --git a/src/aiida/storage/psql_dos/migrations/utils/dblog_update.py b/src/aiida/storage/_psql_dos/migrations/utils/dblog_update.py similarity index 100% rename from src/aiida/storage/psql_dos/migrations/utils/dblog_update.py rename to src/aiida/storage/_psql_dos/migrations/utils/dblog_update.py diff --git a/src/aiida/storage/psql_dos/migrations/utils/duplicate_uuids.py b/src/aiida/storage/_psql_dos/migrations/utils/duplicate_uuids.py similarity index 100% rename from src/aiida/storage/psql_dos/migrations/utils/duplicate_uuids.py rename to src/aiida/storage/_psql_dos/migrations/utils/duplicate_uuids.py diff --git a/src/aiida/storage/psql_dos/migrations/utils/integrity.py b/src/aiida/storage/_psql_dos/migrations/utils/integrity.py similarity index 100% rename from src/aiida/storage/psql_dos/migrations/utils/integrity.py rename to src/aiida/storage/_psql_dos/migrations/utils/integrity.py diff --git a/src/aiida/storage/psql_dos/migrations/utils/legacy_workflows.py b/src/aiida/storage/_psql_dos/migrations/utils/legacy_workflows.py similarity index 100% rename from src/aiida/storage/psql_dos/migrations/utils/legacy_workflows.py rename to src/aiida/storage/_psql_dos/migrations/utils/legacy_workflows.py diff --git a/src/aiida/storage/psql_dos/migrations/utils/migrate_repository.py b/src/aiida/storage/_psql_dos/migrations/utils/migrate_repository.py similarity index 100% rename from src/aiida/storage/psql_dos/migrations/utils/migrate_repository.py rename to src/aiida/storage/_psql_dos/migrations/utils/migrate_repository.py diff --git a/src/aiida/storage/psql_dos/migrations/utils/parity.py b/src/aiida/storage/_psql_dos/migrations/utils/parity.py similarity index 100% rename from src/aiida/storage/psql_dos/migrations/utils/parity.py rename to src/aiida/storage/_psql_dos/migrations/utils/parity.py diff --git a/src/aiida/storage/psql_dos/migrations/utils/provenance_redesign.py b/src/aiida/storage/_psql_dos/migrations/utils/provenance_redesign.py similarity index 100% rename from src/aiida/storage/psql_dos/migrations/utils/provenance_redesign.py rename to src/aiida/storage/_psql_dos/migrations/utils/provenance_redesign.py diff --git a/src/aiida/storage/psql_dos/migrations/utils/reflect.py b/src/aiida/storage/_psql_dos/migrations/utils/reflect.py similarity index 100% rename from src/aiida/storage/psql_dos/migrations/utils/reflect.py rename to src/aiida/storage/_psql_dos/migrations/utils/reflect.py diff --git a/src/aiida/storage/psql_dos/migrations/utils/utils.py b/src/aiida/storage/_psql_dos/migrations/utils/utils.py similarity index 100% rename from src/aiida/storage/psql_dos/migrations/utils/utils.py rename to src/aiida/storage/_psql_dos/migrations/utils/utils.py diff --git a/src/aiida/storage/psql_dos/migrations/versions/041a79fc615f_dblog_cleaning.py b/src/aiida/storage/_psql_dos/migrations/versions/041a79fc615f_dblog_cleaning.py similarity index 100% rename from src/aiida/storage/psql_dos/migrations/versions/041a79fc615f_dblog_cleaning.py rename to src/aiida/storage/_psql_dos/migrations/versions/041a79fc615f_dblog_cleaning.py diff --git a/src/aiida/storage/psql_dos/migrations/versions/07fac78e6209_drop_computer_transport_params.py b/src/aiida/storage/_psql_dos/migrations/versions/07fac78e6209_drop_computer_transport_params.py similarity index 100% rename from src/aiida/storage/psql_dos/migrations/versions/07fac78e6209_drop_computer_transport_params.py rename to src/aiida/storage/_psql_dos/migrations/versions/07fac78e6209_drop_computer_transport_params.py diff --git a/src/aiida/storage/psql_dos/migrations/versions/0aebbeab274d_base_data_plugin_type_string.py b/src/aiida/storage/_psql_dos/migrations/versions/0aebbeab274d_base_data_plugin_type_string.py similarity index 100% rename from src/aiida/storage/psql_dos/migrations/versions/0aebbeab274d_base_data_plugin_type_string.py rename to src/aiida/storage/_psql_dos/migrations/versions/0aebbeab274d_base_data_plugin_type_string.py diff --git a/src/aiida/storage/psql_dos/migrations/versions/0edcdd5a30f0_dbgroup_extras.py b/src/aiida/storage/_psql_dos/migrations/versions/0edcdd5a30f0_dbgroup_extras.py similarity index 100% rename from src/aiida/storage/psql_dos/migrations/versions/0edcdd5a30f0_dbgroup_extras.py rename to src/aiida/storage/_psql_dos/migrations/versions/0edcdd5a30f0_dbgroup_extras.py diff --git a/src/aiida/storage/psql_dos/migrations/versions/118349c10896_default_link_label.py b/src/aiida/storage/_psql_dos/migrations/versions/118349c10896_default_link_label.py similarity index 100% rename from src/aiida/storage/psql_dos/migrations/versions/118349c10896_default_link_label.py rename to src/aiida/storage/_psql_dos/migrations/versions/118349c10896_default_link_label.py diff --git a/src/aiida/storage/psql_dos/migrations/versions/12536798d4d3_trajectory_symbols_to_attribute.py b/src/aiida/storage/_psql_dos/migrations/versions/12536798d4d3_trajectory_symbols_to_attribute.py similarity index 100% rename from src/aiida/storage/psql_dos/migrations/versions/12536798d4d3_trajectory_symbols_to_attribute.py rename to src/aiida/storage/_psql_dos/migrations/versions/12536798d4d3_trajectory_symbols_to_attribute.py diff --git a/src/aiida/storage/psql_dos/migrations/versions/140c971ae0a3_migrate_builtin_calculations.py b/src/aiida/storage/_psql_dos/migrations/versions/140c971ae0a3_migrate_builtin_calculations.py similarity index 100% rename from src/aiida/storage/psql_dos/migrations/versions/140c971ae0a3_migrate_builtin_calculations.py rename to src/aiida/storage/_psql_dos/migrations/versions/140c971ae0a3_migrate_builtin_calculations.py diff --git a/src/aiida/storage/psql_dos/migrations/versions/162b99bca4a2_drop_dbcalcstate.py b/src/aiida/storage/_psql_dos/migrations/versions/162b99bca4a2_drop_dbcalcstate.py similarity index 100% rename from src/aiida/storage/psql_dos/migrations/versions/162b99bca4a2_drop_dbcalcstate.py rename to src/aiida/storage/_psql_dos/migrations/versions/162b99bca4a2_drop_dbcalcstate.py diff --git a/src/aiida/storage/psql_dos/migrations/versions/1830c8430131_drop_node_columns_nodeversion_public.py b/src/aiida/storage/_psql_dos/migrations/versions/1830c8430131_drop_node_columns_nodeversion_public.py similarity index 100% rename from src/aiida/storage/psql_dos/migrations/versions/1830c8430131_drop_node_columns_nodeversion_public.py rename to src/aiida/storage/_psql_dos/migrations/versions/1830c8430131_drop_node_columns_nodeversion_public.py diff --git a/src/aiida/storage/psql_dos/migrations/versions/1b8ed3425af9_remove_legacy_workflows.py b/src/aiida/storage/_psql_dos/migrations/versions/1b8ed3425af9_remove_legacy_workflows.py similarity index 100% rename from src/aiida/storage/psql_dos/migrations/versions/1b8ed3425af9_remove_legacy_workflows.py rename to src/aiida/storage/_psql_dos/migrations/versions/1b8ed3425af9_remove_legacy_workflows.py diff --git a/src/aiida/storage/psql_dos/migrations/versions/1de112340b16_django_parity_1.py b/src/aiida/storage/_psql_dos/migrations/versions/1de112340b16_django_parity_1.py similarity index 100% rename from src/aiida/storage/psql_dos/migrations/versions/1de112340b16_django_parity_1.py rename to src/aiida/storage/_psql_dos/migrations/versions/1de112340b16_django_parity_1.py diff --git a/src/aiida/storage/psql_dos/migrations/versions/1de112340b17_django_parity_2.py b/src/aiida/storage/_psql_dos/migrations/versions/1de112340b17_django_parity_2.py similarity index 100% rename from src/aiida/storage/psql_dos/migrations/versions/1de112340b17_django_parity_2.py rename to src/aiida/storage/_psql_dos/migrations/versions/1de112340b17_django_parity_2.py diff --git a/src/aiida/storage/psql_dos/migrations/versions/1de112340b18_django_parity_3.py b/src/aiida/storage/_psql_dos/migrations/versions/1de112340b18_django_parity_3.py similarity index 100% rename from src/aiida/storage/psql_dos/migrations/versions/1de112340b18_django_parity_3.py rename to src/aiida/storage/_psql_dos/migrations/versions/1de112340b18_django_parity_3.py diff --git a/src/aiida/storage/psql_dos/migrations/versions/1feaea71bd5a_migrate_repository.py b/src/aiida/storage/_psql_dos/migrations/versions/1feaea71bd5a_migrate_repository.py similarity index 100% rename from src/aiida/storage/psql_dos/migrations/versions/1feaea71bd5a_migrate_repository.py rename to src/aiida/storage/_psql_dos/migrations/versions/1feaea71bd5a_migrate_repository.py diff --git a/src/aiida/storage/psql_dos/migrations/versions/239cea6d2452_provenance_redesign.py b/src/aiida/storage/_psql_dos/migrations/versions/239cea6d2452_provenance_redesign.py similarity index 100% rename from src/aiida/storage/psql_dos/migrations/versions/239cea6d2452_provenance_redesign.py rename to 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a/src/aiida/storage/psql_dos/migrations/versions/35d4ee9a1b0e_code_hidden_attr_to_extra.py b/src/aiida/storage/_psql_dos/migrations/versions/35d4ee9a1b0e_code_hidden_attr_to_extra.py similarity index 100% rename from src/aiida/storage/psql_dos/migrations/versions/35d4ee9a1b0e_code_hidden_attr_to_extra.py rename to src/aiida/storage/_psql_dos/migrations/versions/35d4ee9a1b0e_code_hidden_attr_to_extra.py diff --git a/src/aiida/storage/psql_dos/migrations/versions/375c2db70663_dblog_uuid_uniqueness_constraint.py b/src/aiida/storage/_psql_dos/migrations/versions/375c2db70663_dblog_uuid_uniqueness_constraint.py similarity index 100% rename from src/aiida/storage/psql_dos/migrations/versions/375c2db70663_dblog_uuid_uniqueness_constraint.py rename to src/aiida/storage/_psql_dos/migrations/versions/375c2db70663_dblog_uuid_uniqueness_constraint.py diff --git a/src/aiida/storage/psql_dos/migrations/versions/37f3d4882837_make_all_uuid_columns_unique.py 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src/aiida/storage/_sqlite_zip/migrations/versions/__init__.py diff --git a/src/aiida/storage/sqlite_zip/migrations/versions/main_0000_initial.py b/src/aiida/storage/_sqlite_zip/migrations/versions/main_0000_initial.py similarity index 100% rename from src/aiida/storage/sqlite_zip/migrations/versions/main_0000_initial.py rename to src/aiida/storage/_sqlite_zip/migrations/versions/main_0000_initial.py diff --git a/src/aiida/storage/sqlite_zip/migrations/versions/main_0000a_replace_nulls.py b/src/aiida/storage/_sqlite_zip/migrations/versions/main_0000a_replace_nulls.py similarity index 100% rename from src/aiida/storage/sqlite_zip/migrations/versions/main_0000a_replace_nulls.py rename to src/aiida/storage/_sqlite_zip/migrations/versions/main_0000a_replace_nulls.py diff --git a/src/aiida/storage/sqlite_zip/migrations/versions/main_0000b_non_nullable.py b/src/aiida/storage/_sqlite_zip/migrations/versions/main_0000b_non_nullable.py similarity index 100% rename from src/aiida/storage/sqlite_zip/migrations/versions/main_0000b_non_nullable.py rename to src/aiida/storage/_sqlite_zip/migrations/versions/main_0000b_non_nullable.py diff --git a/src/aiida/storage/sqlite_zip/migrations/versions/main_0001.py b/src/aiida/storage/_sqlite_zip/migrations/versions/main_0001.py similarity index 100% rename from src/aiida/storage/sqlite_zip/migrations/versions/main_0001.py rename to src/aiida/storage/_sqlite_zip/migrations/versions/main_0001.py diff --git a/src/aiida/storage/sqlite_zip/migrator.py b/src/aiida/storage/_sqlite_zip/migrator.py similarity index 100% rename from src/aiida/storage/sqlite_zip/migrator.py rename to src/aiida/storage/_sqlite_zip/migrator.py diff --git a/src/aiida/storage/sqlite_zip/models.py b/src/aiida/storage/_sqlite_zip/models.py similarity index 100% rename from src/aiida/storage/sqlite_zip/models.py rename to src/aiida/storage/_sqlite_zip/models.py diff --git a/src/aiida/storage/sqlite_zip/orm.py b/src/aiida/storage/_sqlite_zip/orm.py similarity index 100% rename from src/aiida/storage/sqlite_zip/orm.py rename to src/aiida/storage/_sqlite_zip/orm.py diff --git a/src/aiida/storage/sqlite_zip/utils.py b/src/aiida/storage/_sqlite_zip/utils.py similarity index 100% rename from src/aiida/storage/sqlite_zip/utils.py rename to src/aiida/storage/_sqlite_zip/utils.py diff --git a/src/aiida/tools/__init__.py b/src/aiida/tools/__init__.py index 9c238fd858..a0a5775be8 100644 --- a/src/aiida/tools/__init__.py +++ b/src/aiida/tools/__init__.py @@ -22,12 +22,12 @@ # fmt: off -from .calculations import * -from .data import * -from .dumping import * -from .graph import * -from .groups import * -from .visualization import * +from ._calculations import * +from ._data import * +from ._dumping import * +from ._graph import * +from ._groups import * +from ._visualization import * __all__ = ( 'CalculationTools', diff --git a/src/aiida/tools/archive/__init__.py b/src/aiida/tools/_archive/__init__.py similarity index 100% rename from src/aiida/tools/archive/__init__.py rename to src/aiida/tools/_archive/__init__.py diff --git a/src/aiida/tools/archive/abstract.py b/src/aiida/tools/_archive/abstract.py similarity index 100% rename from src/aiida/tools/archive/abstract.py rename to src/aiida/tools/_archive/abstract.py diff --git a/src/aiida/tools/archive/common.py b/src/aiida/tools/_archive/common.py similarity index 100% rename from src/aiida/tools/archive/common.py rename to src/aiida/tools/_archive/common.py diff --git a/src/aiida/tools/archive/create.py b/src/aiida/tools/_archive/create.py similarity index 100% rename from src/aiida/tools/archive/create.py rename to src/aiida/tools/_archive/create.py diff --git a/src/aiida/tools/archive/exceptions.py b/src/aiida/tools/_archive/exceptions.py similarity index 100% rename from src/aiida/tools/archive/exceptions.py rename to src/aiida/tools/_archive/exceptions.py diff --git a/src/aiida/tools/archive/implementations/__init__.py b/src/aiida/tools/_archive/implementations/__init__.py similarity index 100% rename from src/aiida/tools/archive/implementations/__init__.py rename to src/aiida/tools/_archive/implementations/__init__.py diff --git a/src/aiida/tools/archive/implementations/sqlite_zip/__init__.py b/src/aiida/tools/_archive/implementations/sqlite_zip/__init__.py similarity index 100% rename from src/aiida/tools/archive/implementations/sqlite_zip/__init__.py rename to src/aiida/tools/_archive/implementations/sqlite_zip/__init__.py diff --git a/src/aiida/tools/archive/implementations/sqlite_zip/main.py b/src/aiida/tools/_archive/implementations/sqlite_zip/main.py similarity index 100% rename from src/aiida/tools/archive/implementations/sqlite_zip/main.py rename to src/aiida/tools/_archive/implementations/sqlite_zip/main.py diff --git a/src/aiida/tools/archive/implementations/sqlite_zip/reader.py b/src/aiida/tools/_archive/implementations/sqlite_zip/reader.py similarity index 100% rename from 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b/src/aiida/tools/_ipython/__init__.py similarity index 100% rename from src/aiida/tools/ipython/__init__.py rename to src/aiida/tools/_ipython/__init__.py diff --git a/src/aiida/tools/ipython/aiida_magic_register.py b/src/aiida/tools/_ipython/aiida_magic_register.py similarity index 100% rename from src/aiida/tools/ipython/aiida_magic_register.py rename to src/aiida/tools/_ipython/aiida_magic_register.py diff --git a/src/aiida/tools/ipython/ipython_magics.py b/src/aiida/tools/_ipython/ipython_magics.py similarity index 100% rename from src/aiida/tools/ipython/ipython_magics.py rename to src/aiida/tools/_ipython/ipython_magics.py diff --git a/src/aiida/tools/pytest_fixtures/__init__.py b/src/aiida/tools/_pytest_fixtures/__init__.py similarity index 100% rename from src/aiida/tools/pytest_fixtures/__init__.py rename to src/aiida/tools/_pytest_fixtures/__init__.py diff --git a/src/aiida/tools/pytest_fixtures/configuration.py b/src/aiida/tools/_pytest_fixtures/configuration.py similarity index 100% rename from src/aiida/tools/pytest_fixtures/configuration.py rename to src/aiida/tools/_pytest_fixtures/configuration.py diff --git a/src/aiida/tools/pytest_fixtures/daemon.py b/src/aiida/tools/_pytest_fixtures/daemon.py similarity index 100% rename from src/aiida/tools/pytest_fixtures/daemon.py rename to src/aiida/tools/_pytest_fixtures/daemon.py diff --git a/src/aiida/tools/pytest_fixtures/entry_points.py b/src/aiida/tools/_pytest_fixtures/entry_points.py similarity index 100% rename from src/aiida/tools/pytest_fixtures/entry_points.py rename to src/aiida/tools/_pytest_fixtures/entry_points.py diff --git a/src/aiida/tools/pytest_fixtures/globals.py b/src/aiida/tools/_pytest_fixtures/globals.py similarity index 100% rename from src/aiida/tools/pytest_fixtures/globals.py rename to src/aiida/tools/_pytest_fixtures/globals.py diff --git a/src/aiida/tools/pytest_fixtures/orm.py b/src/aiida/tools/_pytest_fixtures/orm.py similarity index 100% rename from src/aiida/tools/pytest_fixtures/orm.py rename to src/aiida/tools/_pytest_fixtures/orm.py diff --git a/src/aiida/tools/pytest_fixtures/storage.py b/src/aiida/tools/_pytest_fixtures/storage.py similarity index 100% rename from src/aiida/tools/pytest_fixtures/storage.py rename to src/aiida/tools/_pytest_fixtures/storage.py diff --git a/src/aiida/tools/query/__init__.py b/src/aiida/tools/_query/__init__.py similarity index 100% rename from src/aiida/tools/query/__init__.py rename to src/aiida/tools/_query/__init__.py diff --git a/src/aiida/tools/query/calculation.py b/src/aiida/tools/_query/calculation.py similarity index 100% rename from src/aiida/tools/query/calculation.py rename to src/aiida/tools/_query/calculation.py diff --git a/src/aiida/tools/query/formatting.py b/src/aiida/tools/_query/formatting.py similarity index 100% rename from src/aiida/tools/query/formatting.py rename to src/aiida/tools/_query/formatting.py diff --git a/src/aiida/tools/query/mapping.py b/src/aiida/tools/_query/mapping.py similarity index 100% rename from src/aiida/tools/query/mapping.py rename to src/aiida/tools/_query/mapping.py diff --git a/src/aiida/tools/visualization/__init__.py b/src/aiida/tools/_visualization/__init__.py similarity index 100% rename from src/aiida/tools/visualization/__init__.py rename to src/aiida/tools/_visualization/__init__.py diff --git a/src/aiida/tools/visualization/graph.py b/src/aiida/tools/_visualization/graph.py similarity index 100% rename from src/aiida/tools/visualization/graph.py rename to src/aiida/tools/_visualization/graph.py diff --git a/src/aiida/transports/__init__.py b/src/aiida/transports/__init__.py index eecd07c04f..77ab3ed658 100644 --- a/src/aiida/transports/__init__.py +++ b/src/aiida/transports/__init__.py @@ -12,8 +12,8 @@ # fmt: off -from .plugins import * -from .transport import * +from ._plugins import * +from ._transport import * __all__ = ( 'SshTransport', diff --git a/src/aiida/transports/cli.py b/src/aiida/transports/_cli.py similarity index 100% rename from src/aiida/transports/cli.py rename to src/aiida/transports/_cli.py diff --git a/src/aiida/transports/plugins/__init__.py b/src/aiida/transports/_plugins/__init__.py similarity index 100% rename from src/aiida/transports/plugins/__init__.py rename to src/aiida/transports/_plugins/__init__.py diff --git a/src/aiida/transports/plugins/local.py b/src/aiida/transports/_plugins/local.py similarity index 100% rename from src/aiida/transports/plugins/local.py rename to src/aiida/transports/_plugins/local.py diff --git a/src/aiida/transports/plugins/ssh.py b/src/aiida/transports/_plugins/ssh.py similarity index 100% rename from src/aiida/transports/plugins/ssh.py rename to src/aiida/transports/_plugins/ssh.py diff --git a/src/aiida/transports/plugins/ssh_auto.py b/src/aiida/transports/_plugins/ssh_auto.py similarity index 100% rename from src/aiida/transports/plugins/ssh_auto.py rename to src/aiida/transports/_plugins/ssh_auto.py diff --git a/src/aiida/transports/transport.py b/src/aiida/transports/_transport.py similarity index 100% rename from src/aiida/transports/transport.py rename to src/aiida/transports/_transport.py diff --git a/src/aiida/transports/util.py b/src/aiida/transports/_util.py similarity index 100% rename from src/aiida/transports/util.py rename to src/aiida/transports/_util.py diff --git a/src/aiida/workflows/arithmetic/__init__.py b/src/aiida/workflows/_arithmetic/__init__.py similarity index 100% rename from src/aiida/workflows/arithmetic/__init__.py rename to src/aiida/workflows/_arithmetic/__init__.py diff --git a/src/aiida/workflows/arithmetic/add_multiply.py b/src/aiida/workflows/_arithmetic/add_multiply.py similarity index 100% rename from src/aiida/workflows/arithmetic/add_multiply.py rename to src/aiida/workflows/_arithmetic/add_multiply.py diff --git a/src/aiida/workflows/arithmetic/multiply_add.py b/src/aiida/workflows/_arithmetic/multiply_add.py similarity index 100% rename from src/aiida/workflows/arithmetic/multiply_add.py rename to src/aiida/workflows/_arithmetic/multiply_add.py