From 993b81917c5aa32fcd594762e6efebfc87e50469 Mon Sep 17 00:00:00 2001 From: Nolwen Date: Thu, 7 Nov 2024 15:32:13 +0100 Subject: [PATCH] Add a sb3 algo + policy for domains with graph observations - we reuse our stable_baselines3 wrapper - the policy is extracting features from the graph with a GNN - the GNN is using pytorch-geometric - We subclass - ActorCriticPolicy: - feature extractor = gnn - custom conversion of observation to torch to convert into torch_geometric.data.Data - PPO to handle properly - observation conversion - rollout buffer - Current limitations: - we extract a fixed number of features (independent of edge/node numbers) for now as we end with a feature reduction layer connected to a classic mlp (not knowning anything about the current graph structure) - User input: the user can define (and default choices are made else) - the gnn (default to a 2 layers GCN), taking as inputs w.r.t torch_geometric conventions: - x: nodes features - edge_index: edge indices or sparse transposed adjency matrix - edge_attr (optional): edges features - edge_weight (optional): edge weights (taken from first dimension of edge_attr) - the feature reduction layer from the gnn output to the fixed number of features (default to global_max_pool + linear layer + relu) --- .github/workflows/ci.yml | 12 +- examples/gnn_sb3_jsp.py | 140 ++++ examples/gnn_sb3_maze.py | 204 ++++++ poetry.lock | 617 +++++++++++++++++- pyproject.toml | 9 +- .../solver/stable_baselines/gnn/__init__.py | 1 + .../stable_baselines/gnn/common/__init__.py | 0 .../stable_baselines/gnn/common/buffers.py | 132 ++++ .../gnn/common/on_policy_algorithm.py | 171 +++++ .../stable_baselines/gnn/common/policies.py | 112 ++++ .../gnn/common/torch_layers.py | 115 ++++ .../stable_baselines/gnn/common/utils.py | 34 + .../gnn/common/vec_env/__init__.py | 0 .../gnn/common/vec_env/dummy_vec_env.py | 71 ++ .../stable_baselines/gnn/ppo/__init__.py | 4 + .../solver/stable_baselines/gnn/ppo/ppo.py | 13 + .../stable_baselines/stable_baselines.py | 8 +- tests/solvers/python/test_gnn_sb3.py | 417 ++++++++++++ 18 files changed, 2032 insertions(+), 28 deletions(-) create mode 100644 examples/gnn_sb3_jsp.py create mode 100644 examples/gnn_sb3_maze.py create mode 100644 skdecide/hub/solver/stable_baselines/gnn/__init__.py create mode 100644 skdecide/hub/solver/stable_baselines/gnn/common/__init__.py create mode 100644 skdecide/hub/solver/stable_baselines/gnn/common/buffers.py create mode 100644 skdecide/hub/solver/stable_baselines/gnn/common/on_policy_algorithm.py create mode 100644 skdecide/hub/solver/stable_baselines/gnn/common/policies.py create mode 100644 skdecide/hub/solver/stable_baselines/gnn/common/torch_layers.py create mode 100644 skdecide/hub/solver/stable_baselines/gnn/common/utils.py create mode 100644 skdecide/hub/solver/stable_baselines/gnn/common/vec_env/__init__.py create mode 100644 skdecide/hub/solver/stable_baselines/gnn/common/vec_env/dummy_vec_env.py create mode 100644 skdecide/hub/solver/stable_baselines/gnn/ppo/__init__.py create mode 100644 skdecide/hub/solver/stable_baselines/gnn/ppo/ppo.py create mode 100644 tests/solvers/python/test_gnn_sb3.py diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index b2f0c5adf8..997426854e 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -564,9 +564,9 @@ jobs: python_version=${{ matrix.python-version }} wheelfile=$(ls ./wheels/scikit_decide*-cp${python_version/\./}-*win*.whl) if [ "$python_version" = "3.12" ]; then - pip install ${wheelfile}[all] pytest "pygame>=2.5" optuna "cffi>=1.17" + pip install ${wheelfile}[all] pytest "pygame>=2.5" optuna "cffi>=1.17" graph-jsp-env pytest-cases else - pip install ${wheelfile}[all] pytest gymnasium[classic-control] optuna + pip install ${wheelfile}[all] pytest gymnasium[classic-control] optuna graph-jsp-env pytest-cases fi - name: Test with pytest @@ -662,9 +662,9 @@ jobs: arch=$(uname -m) wheelfile=$(ls ./wheels/scikit_decide*-cp${python_version/\./}-*macos*${arch}.whl) if [ "$python_version" = "3.12" ]; then - pip install ${wheelfile}[all] pytest "pygame>=2.5" optuna "cffi>=1.17" + pip install ${wheelfile}[all] pytest "pygame>=2.5" optuna "cffi>=1.17" graph-jsp-env pytest-cases else - pip install ${wheelfile}[all] pytest gymnasium[classic-control] optuna + pip install ${wheelfile}[all] pytest gymnasium[classic-control] optuna graph-jsp-env pytest-cases fi - name: Test with pytest @@ -762,9 +762,9 @@ jobs: python_version=${{ matrix.python-version }} wheelfile=$(ls ./wheels/scikit_decide*-cp${python_version/\./}-*manylinux*.whl) if [ "$python_version" = "3.12" ]; then - pip install ${wheelfile}[all] pytest "pygame>=2.5" "cffi>=1.17" docopt commonmark optuna + pip install ${wheelfile}[all] pytest "pygame>=2.5" "cffi>=1.17" docopt commonmark optuna graph-jsp-env pytest-cases else - pip install ${wheelfile}[all] pytest gymnasium[classic-control] docopt commonmark optuna + pip install ${wheelfile}[all] pytest gymnasium[classic-control] docopt commonmark optuna graph-jsp-env pytest-cases fi - name: Test with pytest diff --git a/examples/gnn_sb3_jsp.py b/examples/gnn_sb3_jsp.py new file mode 100644 index 0000000000..268a13a812 --- /dev/null +++ b/examples/gnn_sb3_jsp.py @@ -0,0 +1,140 @@ +from typing import Any + +import numpy as np +from graph_jsp_env.disjunctive_graph_jsp_env import DisjunctiveGraphJspEnv +from gymnasium.spaces import Box, Graph, GraphInstance + +from skdecide.core import Space, TransitionOutcome, Value +from skdecide.domains import Domain +from skdecide.hub.domain.gym import GymDomain +from skdecide.hub.solver.stable_baselines import StableBaseline +from skdecide.hub.solver.stable_baselines.gnn import GraphPPO +from skdecide.hub.space.gym import GymSpace, ListSpace +from skdecide.utils import rollout + +# JSP graph env + + +class D(Domain): + T_state = GraphInstance # Type of states + T_observation = T_state # Type of observations + T_event = int # Type of events + T_value = float # Type of transition values (rewards or costs) + T_info = None # Type of additional information in environment outcome + + +class GraphJspDomain(GymDomain, D): + _gym_env: DisjunctiveGraphJspEnv + + def __init__(self, gym_env): + GymDomain.__init__(self, gym_env=gym_env) + if self._gym_env.normalize_observation_space: + self.n_nodes_features = gym_env.n_machines + 1 + else: + self.n_nodes_features = 2 + + def _state_step( + self, action: D.T_event + ) -> TransitionOutcome[D.T_state, Value[D.T_value], D.T_predicate, D.T_info]: + outcome = super()._state_step(action=action) + outcome.state = self._np_state2graph_state(outcome.state) + return outcome + + def _get_applicable_actions_from( + self, memory: D.T_memory[D.T_state] + ) -> D.T_agent[Space[D.T_event]]: + return ListSpace(np.nonzero(self._gym_env.valid_action_mask())[0]) + + def _is_applicable_action_from( + self, action: D.T_agent[D.T_event], memory: D.T_memory[D.T_state] + ) -> bool: + return self._gym_env.valid_action_mask()[action] + + def _state_reset(self) -> D.T_state: + return self._np_state2graph_state(super()._state_reset()) + + def _get_observation_space_(self) -> Space[D.T_observation]: + if self._gym_env.normalize_observation_space: + original_graph_space = Graph( + node_space=Box( + low=0.0, high=1.0, shape=(self.n_nodes_features,), dtype=np.float_ + ), + edge_space=Box(low=0, high=1.0, dtype=np.float_), + ) + + else: + original_graph_space = Graph( + node_space=Box( + low=np.array([0, 0]), + high=np.array( + [ + self._gym_env.n_machines, + self._gym_env.longest_processing_time, + ] + ), + dtype=np.int_, + ), + edge_space=Box( + low=0, high=self._gym_env.longest_processing_time, dtype=np.int_ + ), + ) + return GymSpace(original_graph_space) + + def _np_state2graph_state(self, np_state: np.array) -> GraphInstance: + if not self._gym_env.normalize_observation_space: + np_state = np_state.astype(np.int_) + + nodes = np_state[:, -self.n_nodes_features :] + adj = np_state[:, : -self.n_nodes_features] + edge_starts_ends = adj.nonzero() + edge_links = np.transpose(edge_starts_ends) + edges = adj[edge_starts_ends][:, None] + + return GraphInstance(nodes=nodes, edges=edges, edge_links=edge_links) + + def _render_from(self, memory: D.T_memory[D.T_state], **kwargs: Any) -> Any: + return self._gym_env.render(**kwargs) + + +jsp = np.array( + [ + [ + [0, 1, 2], # machines for job 0 + [0, 2, 1], # machines for job 1 + [0, 1, 2], # machines for job 2 + ], + [ + [3, 2, 2], # task durations of job 0 + [2, 1, 4], # task durations of job 1 + [0, 4, 3], # task durations of job 2 + ], + ] +) + + +jsp_env = DisjunctiveGraphJspEnv( + jps_instance=jsp, + perform_left_shift_if_possible=True, + normalize_observation_space=False, + flat_observation_space=False, + action_mode="task", +) + + +# random rollout +domain = GraphJspDomain(gym_env=jsp_env) +rollout(domain=domain, max_steps=jsp_env.total_tasks_without_dummies, num_episodes=1) + +# solve with sb3-PPO-GNN +domain_factory = lambda: GraphJspDomain(gym_env=jsp_env) +with StableBaseline( + domain_factory=domain_factory, + algo_class=GraphPPO, + baselines_policy="GraphInputPolicy", + learn_config={"total_timesteps": 100}, + # batch_size=1, + # normalize_advantage=False +) as solver: + + solver.solve() + rollout(domain=domain_factory(), solver=solver, max_steps=100, num_episodes=1) diff --git a/examples/gnn_sb3_maze.py b/examples/gnn_sb3_maze.py new file mode 100644 index 0000000000..923b3b8a5d --- /dev/null +++ b/examples/gnn_sb3_maze.py @@ -0,0 +1,204 @@ +from typing import Any, Optional + +import numpy as np +from gymnasium.spaces import Box, Discrete, Graph, GraphInstance + +from skdecide.builders.domain import Renderable, UnrestrictedActions +from skdecide.core import Space, Value +from skdecide.domains import DeterministicPlanningDomain +from skdecide.hub.domain.maze import Maze +from skdecide.hub.domain.maze.maze import DEFAULT_MAZE, Action, State +from skdecide.hub.solver.stable_baselines import StableBaseline +from skdecide.hub.solver.stable_baselines.gnn import GraphPPO +from skdecide.hub.space.gym import GymSpace, ListSpace +from skdecide.utils import rollout + + +class D(DeterministicPlanningDomain, UnrestrictedActions, Renderable): + T_state = GraphInstance # Type of states + T_observation = T_state # Type of observations + T_event = Action # Type of events + T_value = float # Type of transition values (rewards or costs) + T_predicate = bool # Type of logical checks + T_info = ( + None # Type of additional information given as part of an environment outcome + ) + + +class GraphMaze(D): + def __init__(self, maze_str: str = DEFAULT_MAZE, discrete_features: bool = False): + self.discrete_features = discrete_features + self.maze_domain = Maze(maze_str=maze_str) + np_wall = np.array(self.maze_domain._maze) + np_y = np.array( + [ + [(i) for j in range(self.maze_domain._num_cols)] + for i in range(self.maze_domain._num_rows) + ] + ) + np_x = np.array( + [ + [(j) for j in range(self.maze_domain._num_cols)] + for i in range(self.maze_domain._num_rows) + ] + ) + walls = np_wall.ravel() + coords = [i for i in zip(np_y.ravel(), np_x.ravel())] + np_node_id = np.reshape(range(len(walls)), np_wall.shape) + edge_links = [] + edges = [] + for i in range(self.maze_domain._num_rows): + for j in range(self.maze_domain._num_cols): + current_coord = (i, j) + if i > 0: + next_coord = (i - 1, j) + edge_links.append( + (np_node_id[current_coord], np_node_id[next_coord]) + ) + edges.append(np_wall[current_coord] * np_wall[next_coord]) + if i < self.maze_domain._num_rows - 1: + next_coord = (i + 1, j) + edge_links.append( + (np_node_id[current_coord], np_node_id[next_coord]) + ) + edges.append(np_wall[current_coord] * np_wall[next_coord]) + if j > 0: + next_coord = (i, j - 1) + edge_links.append( + (np_node_id[current_coord], np_node_id[next_coord]) + ) + edges.append(np_wall[current_coord] * np_wall[next_coord]) + if j < self.maze_domain._num_cols - 1: + next_coord = (i, j + 1) + edge_links.append( + (np_node_id[current_coord], np_node_id[next_coord]) + ) + edges.append(np_wall[current_coord] * np_wall[next_coord]) + self.edges = np.array(edges) + self.edge_links = np.array(edge_links) + self.walls = walls + self.node_ids = np_node_id + self.coords = coords + + def _mazestate2graph(self, state: State) -> GraphInstance: + x, y = state + agent_presence = np.zeros(self.walls.shape, dtype=self.walls.dtype) + agent_presence[self.node_ids[y, x]] = 1 + nodes = np.stack([self.walls, agent_presence], axis=-1) + if self.discrete_features: + return GraphInstance( + nodes=nodes, edges=self.edges, edge_links=self.edge_links + ) + else: + return GraphInstance( + nodes=nodes, edges=self.edges[:, None], edge_links=self.edge_links + ) + + def _graph2mazestate(self, graph: GraphInstance) -> State: + y, x = self.coords[graph.nodes[:, 1].nonzero()[0][0]] + return State(x=x, y=y) + + def _is_terminal(self, state: D.T_state) -> D.T_predicate: + return self.maze_domain._is_terminal(self._graph2mazestate(state)) + + def _get_next_state(self, memory: D.T_state, action: D.T_event) -> D.T_state: + maze_memory = self._graph2mazestate(memory) + maze_next_state = self.maze_domain._get_next_state( + memory=maze_memory, action=action + ) + return self._mazestate2graph(maze_next_state) + + def _get_transition_value( + self, + memory: D.T_state, + action: D.T_event, + next_state: Optional[D.T_state] = None, + ) -> Value[D.T_value]: + maze_memory = self._graph2mazestate(memory) + if next_state is None: + maze_next_state = None + else: + maze_next_state = self._graph2mazestate(next_state) + return self.maze_domain._get_transition_value( + memory=maze_memory, action=action, next_state=maze_next_state + ) + + def _get_action_space_(self) -> Space[D.T_event]: + return self.maze_domain._get_action_space_() + + def _get_goals_(self) -> Space[D.T_observation]: + return ListSpace([self._mazestate2graph(self.maze_domain._goal)]) + + def _is_goal( + self, observation: D.T_agent[D.T_observation] + ) -> D.T_agent[D.T_predicate]: + return self.maze_domain._is_goal(self._graph2mazestate(observation)) + + def _get_initial_state_(self) -> D.T_state: + return self._mazestate2graph(self.maze_domain._get_initial_state_()) + + def _get_observation_space_(self) -> Space[D.T_observation]: + if self.discrete_features: + return GymSpace( + Graph( + node_space=Box(low=0, high=1, shape=(2,), dtype=self.walls.dtype), + edge_space=Discrete(2), + ) + ) + else: + return GymSpace( + Graph( + node_space=Box(low=0, high=1, shape=(2,), dtype=self.walls.dtype), + edge_space=Box(low=0, high=1, shape=(1,), dtype=self.edges.dtype), + ) + ) + + def _render_from(self, memory: D.T_state, **kwargs: Any) -> Any: + maze_memory = self._graph2mazestate(memory) + self.maze_domain._render_from(memory=maze_memory, **kwargs) + + +MAZE = """ ++-+-+-+-+o+-+-+--+-+-+ +| | | | ++ + + +-+-+-+ +--+ + + +| | | | | | | | ++ +-+-+ +-+ + + -+ +-+ +| | | | | | | ++ + + + + + + +--+ +-+ +| | | | | | ++-+-+-+-+-+-+-+ -+-+ + +| | | | ++ +-+-+-+-+ + +--+-+ + +| | | | ++ + + +-+ +-+ +--+-+-+ +| | | | | | ++ +-+-+ + +-+ + -+-+ + +| | | | | | | | ++-+ +-+ + + + +--+ + + +| | | | | | | ++ +-+ +-+-+-+-+ -+ + + +| | | | | ++-+-+-+-+-+x+-+--+-+-+ +""" + +domain = GraphMaze(maze_str=MAZE, discrete_features=True) +assert domain.reset() in domain.get_observation_space() + +# random rollout +rollout(domain=domain, max_steps=50, num_episodes=1) + +# solve with sb3-PPO-GNN +domain_factory = lambda: GraphMaze(maze_str=MAZE) +max_steps = domain.maze_domain._num_cols * domain.maze_domain._num_rows +with StableBaseline( + domain_factory=domain_factory, + algo_class=GraphPPO, + baselines_policy="GraphInputPolicy", + learn_config={"total_timesteps": 100}, + # batch_size=1, + # normalize_advantage=False +) as solver: + + solver.solve() + rollout(domain=domain_factory(), solver=solver, max_steps=max_steps, 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"sha256:753eaaa0c7195244c84b5cc159dc8204b7fd99f716f11198f999f2332a86b178"}, +] + +[package.dependencies] +idna = ">=2.0" +multidict = ">=4.0" +propcache = ">=0.2.0" + [[package]] name = "zipp" version = "3.20.2" @@ -5570,11 +6159,11 @@ test = ["big-O", "importlib-resources", "jaraco.functools", "jaraco.itertools", type = ["pytest-mypy"] [extras] -all = ["cartopy", "gymnasium", "joblib", "matplotlib", "numpy", "openap", "pyRDDLGym", "pyRDDLGym", "pyRDDLGym-gurobi", "pyRDDLGym-jax", "pyRDDLGym-rl", "pyRDDLGym-rl", "pygeodesy", "pygrib", "pygrib", "ray", "rddlrepository", "scipy", "stable-baselines3", "unified-planning", "up-enhsp", "up-fast-downward", "up-pyperplan", "up-tamer"] +all = ["cartopy", "gymnasium", "joblib", "matplotlib", "numpy", "openap", "pyRDDLGym", "pyRDDLGym", "pyRDDLGym-gurobi", "pyRDDLGym-jax", "pyRDDLGym-rl", "pyRDDLGym-rl", "pygeodesy", "pygrib", "pygrib", "ray", "rddlrepository", "scipy", "stable-baselines3", "torch-geometric", "unified-planning", "up-enhsp", "up-fast-downward", "up-pyperplan", "up-tamer"] domains = ["cartopy", "gymnasium", "matplotlib", "numpy", "openap", "pyRDDLGym", "pyRDDLGym", "pyRDDLGym-rl", "pyRDDLGym-rl", "pygeodesy", "pygrib", "pygrib", "rddlrepository", "scipy", "unified-planning"] -solvers = ["gymnasium", "joblib", "numpy", "pyRDDLGym-gurobi", "pyRDDLGym-jax", "ray", "scipy", "stable-baselines3", "unified-planning", "up-enhsp", "up-fast-downward", "up-pyperplan", "up-tamer"] +solvers = ["gymnasium", "joblib", "numpy", "pyRDDLGym-gurobi", "pyRDDLGym-jax", "ray", "scipy", "stable-baselines3", "torch-geometric", "unified-planning", "up-enhsp", "up-fast-downward", "up-pyperplan", "up-tamer"] [metadata] lock-version = "2.0" python-versions = "^3.9" -content-hash = "353bf8a69a6c318e17e71f400e98ea6d4392883291de54e4c4570cea0a9288f2" +content-hash = "2b17ad02ae15987e4983858da614b1d71e27e1ef9ff9ed1e4b95d32e1ed02813" diff --git a/pyproject.toml b/pyproject.toml index 8fcad3a225..44b62ba7b6 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -82,6 +82,7 @@ pyRDDLGym-rl = [ pyRDDLGym-jax = { version = ">=0.3", optional = true } pyRDDLGym-gurobi = { version = ">=0.2", optional = true } rddlrepository = {version = ">=2.0", optional = true } +torch-geometric = {version = ">=2.5", optional = true} [tool.poetry.extras] domains = [ @@ -111,7 +112,8 @@ solvers = [ "up-pyperplan", "scipy", "pyRDDLGym-jax", - "pyRDDLGym-gurobi" + "pyRDDLGym-gurobi", + "torch-geometric" ] all = [ "gymnasium", @@ -134,7 +136,8 @@ all = [ "pyRDDLGym-rl", "rddlrepository", "pyRDDLGym-jax", - "pyRDDLGym-gurobi" + "pyRDDLGym-gurobi", + "torch-geometric" ] [tool.poetry.plugins."skdecide.domains"] @@ -199,6 +202,8 @@ commonmark = ">=0.9.1" gymnasium = { version = ">=0.28.1", extras = [ "classic-control", ], optional = true } +graph-jsp-env = { version = ">=0.3.3"} +pytest-cases = {version = ">=3.8"} [tool.pytest.ini_options] minversion = "6.0" diff --git a/skdecide/hub/solver/stable_baselines/gnn/__init__.py b/skdecide/hub/solver/stable_baselines/gnn/__init__.py new file mode 100644 index 0000000000..261a27e78b --- /dev/null +++ b/skdecide/hub/solver/stable_baselines/gnn/__init__.py @@ -0,0 +1 @@ +from .ppo import GraphPPO diff --git a/skdecide/hub/solver/stable_baselines/gnn/common/__init__.py b/skdecide/hub/solver/stable_baselines/gnn/common/__init__.py new file mode 100644 index 0000000000..e69de29bb2 diff --git a/skdecide/hub/solver/stable_baselines/gnn/common/buffers.py b/skdecide/hub/solver/stable_baselines/gnn/common/buffers.py new file mode 100644 index 0000000000..602e784ba8 --- /dev/null +++ b/skdecide/hub/solver/stable_baselines/gnn/common/buffers.py @@ -0,0 +1,132 @@ +from collections.abc import Generator +from typing import Optional, Union + +import numpy as np +import torch as th +import torch_geometric as thg +from gymnasium import spaces +from stable_baselines3.common.buffers import RolloutBuffer +from stable_baselines3.common.preprocessing import get_action_dim +from stable_baselines3.common.type_aliases import ( + DictRolloutBufferSamples, + RolloutBufferSamples, +) +from stable_baselines3.common.utils import get_device +from stable_baselines3.common.vec_env import VecNormalize + +from .utils import copy_graph_instance, graph_obs_to_thg_data + + +class GraphRolloutBuffer(RolloutBuffer): + observations: Union[list[spaces.GraphInstance], list[list[spaces.GraphInstance]]] + + def __init__( + self, + buffer_size: int, + observation_space: spaces.Graph, + action_space: spaces.Space, + device: Union[th.device, str] = "auto", + gae_lambda: float = 1, + gamma: float = 0.99, + n_envs: int = 1, + ): + self.buffer_size = buffer_size + self.observation_space = observation_space + self.action_space = action_space + self.obs_shape = ( + observation_space.node_space.shape + observation_space.edge_space.shape + ) + self.action_dim = get_action_dim(action_space) + self.pos = 0 + self.full = False + self.device = get_device(device) + self.n_envs = n_envs + self.gae_lambda = gae_lambda + self.gamma = gamma + self.generator_ready = False + self.reset() + + def reset(self) -> None: + assert isinstance( + self.observation_space, spaces.Graph + ), "GraphRolloutBuffer must be used with Graph obs space only" + super().reset() + self.observations = list() # try to use list to save torch_geometric data + + def add( + self, + obs: spaces.GraphInstance, + action: np.ndarray, + reward: np.ndarray, + episode_start: np.ndarray, + value: th.Tensor, + log_prob: th.Tensor, + ) -> None: + if len(log_prob.shape) == 0: + # Reshape 0-d tensor to avoid error + log_prob = log_prob.reshape(-1, 1) + + # Reshape needed when using multiple envs with discrete observations + # as numpy cannot broadcast (n_discrete,) to (n_discrete, 1) + if isinstance(self.observation_space, spaces.Discrete): + obs = obs.reshape((self.n_envs,) + self.obs_shape) + + # Same reshape, for actions + action = action.reshape((self.n_envs, self.action_dim)) + + self.observations.append([copy_graph_instance(g) for g in obs]) + self.actions[self.pos] = np.array(action).copy() + self.rewards[self.pos] = np.array(reward).copy() + self.episode_starts[self.pos] = np.array(episode_start).copy() + self.values[self.pos] = value.clone().cpu().numpy().flatten() + self.log_probs[self.pos] = log_prob.clone().cpu().numpy() + self.pos += 1 + if self.pos == self.buffer_size: + self.full = True + + def get( + self, batch_size: Optional[int] = None + ) -> Generator[DictRolloutBufferSamples, None, None]: + assert self.full, "" + indices = np.random.permutation(self.buffer_size * self.n_envs) + # Prepare the data + if not self.generator_ready: + # can only be used when venv = 1 + self.raw_observations: list[spaces.GraphInstance] = list() + for vec_obs in self.observations: + self.raw_observations.extend(vec_obs) + self.observations = self.raw_observations + _tensor_names = ["actions", "values", "log_probs", "advantages", "returns"] + + for tensor in _tensor_names: + self.__dict__[tensor] = self.swap_and_flatten(self.__dict__[tensor]) + self.generator_ready = True + + # Return everything, don't create minibatches + if batch_size is None: + batch_size = self.buffer_size * self.n_envs + + start_idx = 0 + while start_idx < self.buffer_size * self.n_envs: + yield self._get_samples(indices[start_idx : start_idx + batch_size]) + start_idx += batch_size + + def _get_samples( + self, batch_inds: np.ndarray, env: Optional[VecNormalize] = None + ) -> RolloutBufferSamples: + selected_observations = thg.data.Batch.from_data_list( + [ + graph_obs_to_thg_data(self.observations[idx], device=self.device) + for idx in batch_inds + ] + ) + data = ( + self.actions[batch_inds], + self.values[batch_inds].flatten(), + self.log_probs[batch_inds].flatten(), + self.advantages[batch_inds].flatten(), + self.returns[batch_inds].flatten(), + ) + return RolloutBufferSamples( + selected_observations, *tuple(map(self.to_torch, data)) + ) diff --git a/skdecide/hub/solver/stable_baselines/gnn/common/on_policy_algorithm.py b/skdecide/hub/solver/stable_baselines/gnn/common/on_policy_algorithm.py new file mode 100644 index 0000000000..6824c75e21 --- /dev/null +++ b/skdecide/hub/solver/stable_baselines/gnn/common/on_policy_algorithm.py @@ -0,0 +1,171 @@ +from typing import Optional, Union + +import numpy as np +import torch as th +from gymnasium import spaces +from stable_baselines3.common.buffers import RolloutBuffer +from stable_baselines3.common.callbacks import BaseCallback +from stable_baselines3.common.on_policy_algorithm import OnPolicyAlgorithm +from stable_baselines3.common.policies import ActorCriticPolicy +from stable_baselines3.common.type_aliases import GymEnv +from stable_baselines3.common.utils import obs_as_tensor +from stable_baselines3.common.vec_env import VecEnv + +from .buffers import GraphRolloutBuffer +from .utils import graph_obs_to_thg_data +from .vec_env.dummy_vec_env import wrap_graph_env + + +class GraphOnPolicyAlgorithm(OnPolicyAlgorithm): + """Base class for On-Policy algorithms (ex: A2C/PPO) with graph observations.""" + + def __init__( + self, + policy: Union[str, type[ActorCriticPolicy]], + env: GymEnv, + rollout_buffer_class: Optional[type[RolloutBuffer]] = None, + **kwargs, + ): + + # Use proper default rollout buffer class + if rollout_buffer_class is None: + rollout_buffer_class = GraphRolloutBuffer + # Use proper VecEnv wrapper for env with Graph spaces + env = wrap_graph_env(env) + if env.num_envs > 1: + raise NotImplementedError( + "GraphOnPolicyAlgorithm not implemented for real vectorized environment " + "(ie. with more than 1 wrapped environment)" + ) + + super().__init__( + policy=policy, + env=env, + rollout_buffer_class=rollout_buffer_class, + **kwargs, + ) + + def collect_rollouts( + self, + env: VecEnv, + callback: BaseCallback, + rollout_buffer: RolloutBuffer, + n_rollout_steps: int, + ) -> bool: + """ + Collect experiences using the current policy and fill a ``RolloutBuffer``. + The term rollout here refers to the model-free notion and should not + be used with the concept of rollout used in model-based RL or planning. + + :param env: The training environment + :param callback: Callback that will be called at each step + (and at the beginning and end of the rollout) + :param rollout_buffer: Buffer to fill with rollouts + :param n_rollout_steps: Number of experiences to collect per environment + :return: True if function returned with at least `n_rollout_steps` + collected, False if callback terminated rollout prematurely. + """ + assert self._last_obs is not None, "No previous observation was provided" + # Switch to eval mode (this affects batch norm / dropout) + self.policy.set_training_mode(False) + + n_steps = 0 + rollout_buffer.reset() + # Sample new weights for the state dependent exploration + if self.use_sde: + self.policy.reset_noise(env.num_envs) + + callback.on_rollout_start() + + while n_steps < n_rollout_steps: + if ( + self.use_sde + and self.sde_sample_freq > 0 + and n_steps % self.sde_sample_freq == 0 + ): + # Sample a new noise matrix + self.policy.reset_noise(env.num_envs) + + with th.no_grad(): + # Convert to pytorch tensor or to TensorDict + if isinstance(self._last_obs[0], spaces.GraphInstance): + obs_tensor = graph_obs_to_thg_data( + self._last_obs[0], device=self.device + ) + else: + obs_tensor = obs_as_tensor(self._last_obs, self.device) + actions, values, log_probs = self.policy(obs_tensor) + actions = actions.cpu().numpy() + + # Rescale and perform action + clipped_actions = actions + + if isinstance(self.action_space, spaces.Box): + if self.policy.squash_output: + # Unscale the actions to match env bounds + # if they were previously squashed (scaled in [-1, 1]) + clipped_actions = self.policy.unscale_action(clipped_actions) + else: + # Otherwise, clip the actions to avoid out of bound error + # as we are sampling from an unbounded Gaussian distribution + clipped_actions = np.clip( + actions, self.action_space.low, self.action_space.high + ) + + new_obs, rewards, dones, infos = env.step(clipped_actions) + + self.num_timesteps += env.num_envs + + # Give access to local variables + callback.update_locals(locals()) + if not callback.on_step(): + return False + + self._update_info_buffer(infos, dones) + n_steps += 1 + + if isinstance(self.action_space, spaces.Discrete): + # Reshape in case of discrete action + actions = actions.reshape(-1, 1) + + # Handle timeout by bootstraping with value function + # see GitHub issue #633 + for idx, done in enumerate(dones): + if ( + done + and infos[idx].get("terminal_observation") is not None + and infos[idx].get("TimeLimit.truncated", False) + ): + terminal_obs = self.policy.obs_to_tensor( + infos[idx]["terminal_observation"] + )[0] + with th.no_grad(): + terminal_value = self.policy.predict_values(terminal_obs)[0] # type: ignore[arg-type] + rewards[idx] += self.gamma * terminal_value + + rollout_buffer.add( + self._last_obs, # type: ignore[arg-type] + actions, + rewards, + self._last_episode_starts, # type: ignore[arg-type] + values, + log_probs, + ) + self._last_obs = new_obs # type: ignore[assignment] + self._last_episode_starts = dones + + with th.no_grad(): + # Compute value for the last timestep + if isinstance(new_obs[0], spaces.GraphInstance): + obs_tensor = graph_obs_to_thg_data(new_obs[0], device=self.device) + else: + obs_tensor = obs_as_tensor(new_obs, self.device) + values = self.policy.predict_values(obs_tensor) # type: ignore[arg-type] + + rollout_buffer.compute_returns_and_advantage(last_values=values, dones=dones) + + callback.update_locals(locals()) + + callback.on_rollout_end() + + return True diff --git a/skdecide/hub/solver/stable_baselines/gnn/common/policies.py b/skdecide/hub/solver/stable_baselines/gnn/common/policies.py new file mode 100644 index 0000000000..fcb6279fd3 --- /dev/null +++ b/skdecide/hub/solver/stable_baselines/gnn/common/policies.py @@ -0,0 +1,112 @@ +import warnings +from typing import Any, Optional, Tuple, Union + +import gymnasium as gym +import torch as th +import torch_geometric as thg +from stable_baselines3.common.distributions import Distribution +from stable_baselines3.common.policies import ActorCriticPolicy +from stable_baselines3.common.torch_layers import BaseFeaturesExtractor +from stable_baselines3.common.type_aliases import Schedule + +from .torch_layers import GraphFeaturesExtractor +from .utils import graph_obs_to_thg_data + +PyTorchGraphObs = Union[thg.data.Data, list[thg.data.Data]] + + +class GNNActorCriticPolicy(ActorCriticPolicy): + def __init__( + self, + observation_space: gym.spaces.Graph, + action_space: gym.spaces.Space, + lr_schedule: Schedule, + net_arch: Optional[list[Union[int, dict[str, list[int]]]]] = None, + activation_fn: type[th.nn.Module] = th.nn.Tanh, + ortho_init: bool = True, + use_sde: bool = False, + log_std_init: float = 0.0, + full_std: bool = True, + use_expln: bool = False, + squash_output: bool = False, + features_extractor_class: type[BaseFeaturesExtractor] = GraphFeaturesExtractor, + features_extractor_kwargs: Optional[dict[str, Any]] = None, + share_features_extractor: bool = True, + normalize_images: bool = True, + optimizer_class: type[th.optim.Optimizer] = th.optim.Adam, + optimizer_kwargs: Optional[dict[str, Any]] = None, + ): + super().__init__( + observation_space=observation_space, + action_space=action_space, + lr_schedule=lr_schedule, + net_arch=net_arch, + activation_fn=activation_fn, + ortho_init=ortho_init, + use_sde=use_sde, + log_std_init=log_std_init, + full_std=full_std, + use_expln=use_expln, + squash_output=squash_output, + features_extractor_class=features_extractor_class, + features_extractor_kwargs=features_extractor_kwargs, + share_features_extractor=share_features_extractor, + normalize_images=normalize_images, + optimizer_class=optimizer_class, + optimizer_kwargs=optimizer_kwargs, + ) + + def extract_features( + self, + obs: thg.data.Data, + features_extractor: Optional[BaseFeaturesExtractor] = None, + ) -> Union[th.Tensor, Tuple[th.Tensor, th.Tensor]]: + """ + Preprocess the observation if needed and extract features. + + :param obs: Observation + :param features_extractor: The features extractor to use. If None, then ``self.features_extractor`` is used. + :return: The extracted features. If features extractor is not shared, returns a tuple with the + features for the actor and the features for the critic. + """ + if self.share_features_extractor: + if features_extractor is None: + features_extractor = self.features_extractor + return features_extractor(obs) + else: + if features_extractor is not None: + warnings.warn( + "Provided features_extractor will be ignored because the features extractor is not shared.", + UserWarning, + ) + + pi_features = self.pi_features_extractor(obs) + vf_features = self.vf_features_extractor(obs) + return pi_features, vf_features + + def obs_to_tensor( + self, observation: gym.spaces.GraphInstance + ) -> tuple[PyTorchGraphObs, bool]: + if isinstance(observation, list): + vectorized_env = True + else: + vectorized_env = False + if vectorized_env: + torch_obs = [ + graph_obs_to_thg_data(obs, device=self.device) for obs in observation + ] + if len(torch_obs) == 1: + torch_obs = torch_obs[0] + else: + torch_obs = graph_obs_to_thg_data(observation, device=self.device) + return torch_obs, vectorized_env + + def get_distribution(self, obs: thg.data.Data) -> Distribution: + features = self.pi_features_extractor(obs) + latent_pi = self.mlp_extractor.forward_actor(features) + return self._get_action_dist_from_latent(latent_pi) + + def predict_values(self, obs: thg.data.Data) -> th.Tensor: + features = self.vf_features_extractor(obs) + latent_vf = self.mlp_extractor.forward_critic(features) + return self.value_net(latent_vf) diff --git a/skdecide/hub/solver/stable_baselines/gnn/common/torch_layers.py b/skdecide/hub/solver/stable_baselines/gnn/common/torch_layers.py new file mode 100644 index 0000000000..0ff5943079 --- /dev/null +++ b/skdecide/hub/solver/stable_baselines/gnn/common/torch_layers.py @@ -0,0 +1,115 @@ +from typing import Any, Optional + +import gymnasium as gym +import numpy as np +import torch as th +import torch_geometric as thg +from stable_baselines3.common.torch_layers import BaseFeaturesExtractor +from torch import nn +from torch_geometric.nn import global_max_pool + + +class GraphFeaturesExtractor(BaseFeaturesExtractor): + """Graph feature extractor for Graph observation spaces. + + Will chain a gnn with a reduction layer to extract a fixed number of features. + The user can specify both the gnn and reduction layer. + + By default, we use: + - gnn: a 2-layers GCN + - reduction layer: global_max_pool + linear layer + relu + + Args: + observation_space: + features_dim: Number of extracted features + - If reduction_layer_class is given, should match the output of this network. + - If reduction_layer is None, will be used by the default network as its output dimension. + gnn_out_dim: dimension of the node embedding in gnn output + - If gnn is given, should not be None and should match the output of gnn + - If gnn is not given, will be used to generate it. By default, gnn_out_dim = 2 * features_dim + gnn_class: GNN network class (for instance chosen from `torch_geometric.nn.models` used to embed the graph observations) + gnn_kwargs: used by `gnn_class.__init__()`. Without effect if `gnn_class` is None. + reduction_layer_class: network class to be plugged after the gnn to get a fixed number of features. + reduction_layer_kwargs: used by `reduction_layer_class.__init__()`. Without effect if `reduction_layer_class` is None. + + """ + + def __init__( + self, + observation_space: gym.spaces.Graph, + features_dim: int = 64, + gnn_out_dim: Optional[int] = None, + gnn_class: Optional[type[nn.Module]] = None, + gnn_kwargs: Optional[dict[str, Any]] = None, + reduction_layer_class: Optional[type[nn.Module]] = None, + reduction_layer_kwargs: Optional[dict[str, Any]] = None, + ): + + super().__init__(observation_space, features_dim=features_dim) + + if gnn_out_dim is None: + if gnn_class is None: + gnn_out_dim = 2 * features_dim + else: + raise ValueError( + "`gnn_out_dim` cannot be None if `gnn` is not None, " + "and should match `gnn` output." + ) + + if gnn_class is None: + node_features_dim = int(np.prod(observation_space.node_space.shape)) + self.gnn = thg.nn.models.GCN( + in_channels=node_features_dim, + hidden_channels=gnn_out_dim, + num_layers=2, + dropout=0.2, + ) + else: + if gnn_kwargs is None: + gnn_kwargs = {} + self.gnn = gnn_class(**gnn_kwargs) + + if reduction_layer_class is None: + self.reduction_layer = _DefaultReductionLayer( + gnn_out_dim=gnn_out_dim, features_dim=features_dim + ) + else: + if reduction_layer_kwargs is None: + reduction_layer_kwargs = {} + self.reduction_layer = reduction_layer_class(**reduction_layer_kwargs) + + def forward(self, observations: thg.data.Data) -> th.Tensor: + x, edge_index, edge_attr, batch = ( + observations.x, + observations.edge_index, + observations.edge_attr, + observations.batch, + ) + # construct edge weights, for GNNs needing it, as the first edge feature + edge_weight = edge_attr[:, 0] + h = self.gnn( + x=x, edge_index=edge_index, edge_weight=edge_weight, edge_attr=edge_attr + ) + embedded_observations = thg.data.Data( + x=h, edge_index=edge_index, edge_attr=edge_attr, batch=batch + ) + h = self.reduction_layer(embedded_observations=embedded_observations) + return h + + +class _DefaultReductionLayer(nn.Module): + def __init__(self, gnn_out_dim: int, features_dim: int): + super().__init__() + self.gnn_out_dim = gnn_out_dim + self.features_dim = features_dim + self.linear_layer = nn.Linear(gnn_out_dim, features_dim) + + def forward(self, embedded_observations: thg.data.Data) -> th.Tensor: + x, edge_index, batch = ( + embedded_observations.x, + embedded_observations.edge_index, + embedded_observations.batch, + ) + h = global_max_pool(x, batch) + h = self.linear_layer(h).relu() + return h diff --git a/skdecide/hub/solver/stable_baselines/gnn/common/utils.py b/skdecide/hub/solver/stable_baselines/gnn/common/utils.py new file mode 100644 index 0000000000..b59e979217 --- /dev/null +++ b/skdecide/hub/solver/stable_baselines/gnn/common/utils.py @@ -0,0 +1,34 @@ +import gymnasium as gym +import torch as th +import torch_geometric as thg + + +def copy_graph_instance(g: gym.spaces.GraphInstance) -> gym.spaces.GraphInstance: + return gym.spaces.GraphInstance( + nodes=np.copy(g.nodes), edges=np.copy(g.edges), edge_links=np.copy(g.edge_links) + ) + + +def copy_np_array_or_list_of_graph_instances( + obs: Union[np.ndarray, list[gym.spaces.GraphInstance]] +) -> Union[np.ndarray, list[gym.spaces.GraphInstance]]: + if isinstance(obs[0], gym.spaces.GraphInstance): + return [copy_graph_instance(g) for g in obs] + else: + return np.copy(obs) + + +def graph_obs_to_thg_data( + obs: gym.spaces.GraphInstance, device: th.device +) -> thg.data.Data: + # Node features + flatten_node_features = obs.nodes.reshape((len(obs.nodes), -1)) + x = th.tensor(flatten_node_features).float() + # Edge features + if obs.edges is None: + edge_attr = None + else: + flatten_edge_features = obs.edges.reshape((len(obs.edges), -1)) + edge_attr = th.tensor(flatten_edge_features).float() + edge_index = th.tensor(obs.edge_links, dtype=th.long).t().contiguous().view(2, -1) + return thg.data.Data(x=x, edge_index=edge_index, edge_attr=edge_attr).to(device) diff --git a/skdecide/hub/solver/stable_baselines/gnn/common/vec_env/__init__.py b/skdecide/hub/solver/stable_baselines/gnn/common/vec_env/__init__.py new file mode 100644 index 0000000000..e69de29bb2 diff --git a/skdecide/hub/solver/stable_baselines/gnn/common/vec_env/dummy_vec_env.py b/skdecide/hub/solver/stable_baselines/gnn/common/vec_env/dummy_vec_env.py new file mode 100644 index 0000000000..d5e22aa809 --- /dev/null +++ b/skdecide/hub/solver/stable_baselines/gnn/common/vec_env/dummy_vec_env.py @@ -0,0 +1,71 @@ +from collections import OrderedDict +from typing import Callable, List, Union + +import gymnasium as gym +import numpy as np +from stable_baselines3.common.env_util import is_wrapped +from stable_baselines3.common.monitor import Monitor +from stable_baselines3.common.type_aliases import GymEnv +from stable_baselines3.common.vec_env import DummyVecEnv +from stable_baselines3.common.vec_env.base_vec_env import VecEnv, VecEnvObs +from stable_baselines3.common.vec_env.util import dict_to_obs + +from ..utils import copy_np_array_or_list_of_graph_instances + +EnvSubObs = Union[np.ndarray, list[gym.spaces.GraphInstance]] +VecEnvObs = Union[EnvSubObs, dict[str, EnvSubObs], tuple[EnvSubObs, ...]] + + +class GraphDummyVecEnv(DummyVecEnv): + def __init__(self, env_fns: List[Callable[[], gym.Env]]): + super().__init__(env_fns) + # replace buffers for graph spaces by lists + obs_space = self.envs[0].observation_space + if isinstance(obs_space, gym.spaces.Graph): + self.buf_obs[None] = [None for _ in range(self.num_envs)] + elif isinstance(obs_space, gym.spaces.Dict): + for k, space in obs_space.spaces: + if isinstance(space, gym.spaces.Graph): + self.buf_obs[k] = [None for _ in range(self.num_envs)] + + def _obs_from_buf(self) -> VecEnvObs: + return dict_to_obs(self.observation_space, copy_obs_dict(self.buf_obs)) + + +def copy_obs_dict(obs: dict[str, EnvSubObs]) -> dict[str, EnvSubObs]: + """ + Deep-copy a dict of numpy arrays. + + :param obs: a dict of numpy arrays. + :return: a dict of copied numpy arrays. + """ + assert isinstance( + obs, OrderedDict + ), f"unexpected type for observations '{type(obs)}'" + return OrderedDict( + [(k, copy_np_array_or_list_of_graph_instances(v)) for k, v in obs.items()] + ) + + +def wrap_graph_env( + env: GymEnv, verbose: int = 0, monitor_wrapper: bool = True +) -> VecEnv: + """Wrap environment with the appropriate wrappers if needed. + + :param env: + :param verbose: Verbosity level: 0 for no output, 1 for indicating wrappers used + :param monitor_wrapper: Whether to wrap the env in a ``Monitor`` when possible. + :return: The wrapped environment. + """ + if not isinstance(env, VecEnv): + if not is_wrapped(env, Monitor) and monitor_wrapper: + if verbose >= 1: + print("Wrapping the env with a `Monitor` wrapper") + env = Monitor(env) + if verbose >= 1: + print("Wrapping the env in a DummyVecEnv.") + # patch: add dummy shape and dtype to graph obs space to avoid issues + env.observation_space._shape = (0,) + env.observation_space.dtype = np.float_ + env = GraphDummyVecEnv([lambda: env]) # type: ignore[list-item, return-value] + return env diff --git a/skdecide/hub/solver/stable_baselines/gnn/ppo/__init__.py b/skdecide/hub/solver/stable_baselines/gnn/ppo/__init__.py new file mode 100644 index 0000000000..500a814e2d --- /dev/null +++ b/skdecide/hub/solver/stable_baselines/gnn/ppo/__init__.py @@ -0,0 +1,4 @@ +from ..common.policies import GNNActorCriticPolicy +from .ppo import GraphPPO + +GraphInputPolicy = GNNActorCriticPolicy diff --git a/skdecide/hub/solver/stable_baselines/gnn/ppo/ppo.py b/skdecide/hub/solver/stable_baselines/gnn/ppo/ppo.py new file mode 100644 index 0000000000..c5a0af089d --- /dev/null +++ b/skdecide/hub/solver/stable_baselines/gnn/ppo/ppo.py @@ -0,0 +1,13 @@ +from typing import ClassVar + +from stable_baselines3 import PPO +from stable_baselines3.common.policies import BasePolicy + +from ..common.on_policy_algorithm import GraphOnPolicyAlgorithm +from ..common.policies import GNNActorCriticPolicy + + +class GraphPPO(GraphOnPolicyAlgorithm, PPO): + policy_aliases: ClassVar[dict[str, type[BasePolicy]]] = { + "GraphInputPolicy": GNNActorCriticPolicy, + } diff --git a/skdecide/hub/solver/stable_baselines/stable_baselines.py b/skdecide/hub/solver/stable_baselines/stable_baselines.py index 7f4cfa7daf..9af1d5a0bb 100644 --- a/skdecide/hub/solver/stable_baselines/stable_baselines.py +++ b/skdecide/hub/solver/stable_baselines/stable_baselines.py @@ -17,7 +17,6 @@ from stable_baselines3.common.callbacks import BaseCallback, ConvertCallback from stable_baselines3.common.policies import BasePolicy from stable_baselines3.common.type_aliases import MaybeCallback -from stable_baselines3.common.vec_env import DummyVecEnv from skdecide import Domain, Solver from skdecide.builders.domain import ( @@ -146,9 +145,7 @@ def _solve(self) -> None: self, "_algo" ): # reuse algo if possible (enables further learning) domain = self._domain_factory() - env = DummyVecEnv( - [lambda: AsGymnasiumEnv(domain)] - ) # the algorithms require a vectorized environment to run + env = AsGymnasiumEnv(domain) # we let the algo wrap it in a vectorized env self._algo = self._algo_class( self._baselines_policy, env, **self._algo_kwargs ) @@ -182,8 +179,7 @@ def _save(self, path: str) -> None: def _load(self, path: str): domain = self._domain_factory() - env = DummyVecEnv([lambda: AsGymnasiumEnv(domain)]) - self._algo = self._algo_class.load(path, env=env) + self._algo = self._algo_class.load(path, env=AsGymnasiumEnv(domain)) self._init_algo(domain) def _init_algo(self, domain: D): diff --git a/tests/solvers/python/test_gnn_sb3.py b/tests/solvers/python/test_gnn_sb3.py new file mode 100644 index 0000000000..2e4715c0b8 --- /dev/null +++ b/tests/solvers/python/test_gnn_sb3.py @@ -0,0 +1,417 @@ +import sys +from typing import Any, Optional + +import numpy as np +import pytest +import torch as th +import torch_geometric as thg +from gymnasium.spaces import Box, Discrete, Graph, GraphInstance +from pytest_cases import fixture, fixture_union, param_fixture +from torch_geometric.nn import global_add_pool + +from skdecide.builders.domain import Renderable, UnrestrictedActions +from skdecide.core import Space, TransitionOutcome, Value +from skdecide.domains import DeterministicPlanningDomain, Domain +from skdecide.hub.domain.gym import GymDomain +from skdecide.hub.domain.maze import Maze +from skdecide.hub.domain.maze.maze import DEFAULT_MAZE, Action, State +from skdecide.hub.solver.stable_baselines import StableBaseline +from skdecide.hub.solver.stable_baselines.gnn import GraphPPO +from skdecide.hub.solver.stable_baselines.gnn.common.torch_layers import ( + GraphFeaturesExtractor, +) +from skdecide.hub.space.gym import GymSpace, ListSpace +from skdecide.utils import rollout + +if not sys.platform.startswith("win"): + try: + from graph_jsp_env.disjunctive_graph_jsp_env import DisjunctiveGraphJspEnv + except ImportError: + graph_jsp_env_available = False + else: + graph_jsp_env_available = True +else: + # import not working on windows because of the banner + graph_jsp_env_available = False + + +if graph_jsp_env_available: + # JSP graph env + + class D(Domain): + T_state = GraphInstance # Type of states + T_observation = T_state # Type of observations + T_event = int # Type of events + T_value = float # Type of transition values (rewards or costs) + T_info = None # Type of additional information in environment outcome + + class GraphJspDomain(GymDomain, D): + _gym_env: DisjunctiveGraphJspEnv + + def __init__(self, gym_env): + GymDomain.__init__(self, gym_env=gym_env) + if self._gym_env.normalize_observation_space: + self.n_nodes_features = gym_env.n_machines + 1 + else: + self.n_nodes_features = 2 + + def _state_step( + self, action: D.T_event + ) -> TransitionOutcome[D.T_state, Value[D.T_value], D.T_predicate, D.T_info]: + outcome = super()._state_step(action=action) + outcome.state = self._np_state2graph_state(outcome.state) + return outcome + + def _get_applicable_actions_from( + self, memory: D.T_memory[D.T_state] + ) -> D.T_agent[Space[D.T_event]]: + return ListSpace(np.nonzero(self._gym_env.valid_action_mask())[0]) + + def _is_applicable_action_from( + self, action: D.T_agent[D.T_event], memory: D.T_memory[D.T_state] + ) -> bool: + return self._gym_env.valid_action_mask()[action] + + def _state_reset(self) -> D.T_state: + return self._np_state2graph_state(super()._state_reset()) + + def _get_observation_space_(self) -> Space[D.T_observation]: + if self._gym_env.normalize_observation_space: + original_graph_space = Graph( + node_space=Box( + low=0.0, + high=1.0, + shape=(self.n_nodes_features,), + dtype=np.float_, + ), + edge_space=Box(low=0, high=1.0, dtype=np.float_), + ) + + else: + original_graph_space = Graph( + node_space=Box( + low=np.array([0, 0]), + high=np.array( + [ + self._gym_env.n_machines, + self._gym_env.longest_processing_time, + ] + ), + dtype=np.int_, + ), + edge_space=Box( + low=0, high=self._gym_env.longest_processing_time, dtype=np.int_ + ), + ) + return GymSpace(original_graph_space) + + def _np_state2graph_state(self, np_state: np.array) -> GraphInstance: + if not self._gym_env.normalize_observation_space: + np_state = np_state.astype(np.int_) + + nodes = np_state[:, -self.n_nodes_features :] + adj = np_state[:, : -self.n_nodes_features] + edge_starts_ends = adj.nonzero() + edge_links = np.transpose(edge_starts_ends) + edges = adj[edge_starts_ends][:, None] + + return GraphInstance(nodes=nodes, edges=edges, edge_links=edge_links) + + def _render_from(self, memory: D.T_memory[D.T_state], **kwargs: Any) -> Any: + return self._gym_env.render(**kwargs) + + jsp = np.array( + [ + [ + [0, 1, 2], # machines for job 0 + [0, 2, 1], # machines for job 1 + [0, 1, 2], # machines for job 2 + ], + [ + [3, 2, 2], # task durations of job 0 + [2, 1, 4], # task durations of job 1 + [0, 4, 3], # task durations of job 2 + ], + ] + ) + + +class D(DeterministicPlanningDomain, UnrestrictedActions, Renderable): + T_state = GraphInstance # Type of states + T_observation = T_state # Type of observations + T_event = Action # Type of events + T_value = float # Type of transition values (rewards or costs) + T_predicate = bool # Type of logical checks + T_info = ( + None # Type of additional information given as part of an environment outcome + ) + + +class GraphMaze(D): + def __init__(self, maze_str: str = DEFAULT_MAZE, discrete_features: bool = False): + self.discrete_features = discrete_features + self.maze_domain = Maze(maze_str=maze_str) + np_wall = np.array(self.maze_domain._maze) + np_y = np.array( + [ + [(i) for j in range(self.maze_domain._num_cols)] + for i in range(self.maze_domain._num_rows) + ] + ) + np_x = np.array( + [ + [(j) for j in range(self.maze_domain._num_cols)] + for i in range(self.maze_domain._num_rows) + ] + ) + walls = np_wall.ravel() + coords = [i for i in zip(np_y.ravel(), np_x.ravel())] + np_node_id = np.reshape(range(len(walls)), np_wall.shape) + edge_links = [] + edges = [] + for i in range(self.maze_domain._num_rows): + for j in range(self.maze_domain._num_cols): + current_coord = (i, j) + if i > 0: + next_coord = (i - 1, j) + edge_links.append( + (np_node_id[current_coord], np_node_id[next_coord]) + ) + edges.append(np_wall[current_coord] * np_wall[next_coord]) + if i < self.maze_domain._num_rows - 1: + next_coord = (i + 1, j) + edge_links.append( + (np_node_id[current_coord], np_node_id[next_coord]) + ) + edges.append(np_wall[current_coord] * np_wall[next_coord]) + if j > 0: + next_coord = (i, j - 1) + edge_links.append( + (np_node_id[current_coord], np_node_id[next_coord]) + ) + edges.append(np_wall[current_coord] * np_wall[next_coord]) + if j < self.maze_domain._num_cols - 1: + next_coord = (i, j + 1) + edge_links.append( + (np_node_id[current_coord], np_node_id[next_coord]) + ) + edges.append(np_wall[current_coord] * np_wall[next_coord]) + self.edges = np.array(edges) + self.edge_links = np.array(edge_links) + self.walls = walls + self.node_ids = np_node_id + self.coords = coords + + def _mazestate2graph(self, state: State) -> GraphInstance: + x, y = state + agent_presence = np.zeros(self.walls.shape, dtype=self.walls.dtype) + agent_presence[self.node_ids[y, x]] = 1 + nodes = np.stack([self.walls, agent_presence], axis=-1) + if self.discrete_features: + return GraphInstance( + nodes=nodes, edges=self.edges, edge_links=self.edge_links + ) + else: + return GraphInstance( + nodes=nodes, edges=self.edges[:, None], edge_links=self.edge_links + ) + + def _graph2mazestate(self, graph: GraphInstance) -> State: + y, x = self.coords[graph.nodes[:, 1].nonzero()[0][0]] + return State(x=x, y=y) + + def _is_terminal(self, state: D.T_state) -> D.T_predicate: + return self.maze_domain._is_terminal(self._graph2mazestate(state)) + + def _get_next_state(self, memory: D.T_state, action: D.T_event) -> D.T_state: + maze_memory = self._graph2mazestate(memory) + maze_next_state = self.maze_domain._get_next_state( + memory=maze_memory, action=action + ) + return self._mazestate2graph(maze_next_state) + + def _get_transition_value( + self, + memory: D.T_state, + action: D.T_event, + next_state: Optional[D.T_state] = None, + ) -> Value[D.T_value]: + maze_memory = self._graph2mazestate(memory) + if next_state is None: + maze_next_state = None + else: + maze_next_state = self._graph2mazestate(next_state) + return self.maze_domain._get_transition_value( + memory=maze_memory, action=action, next_state=maze_next_state + ) + + def _get_action_space_(self) -> Space[D.T_event]: + return self.maze_domain._get_action_space_() + + def _get_goals_(self) -> Space[D.T_observation]: + return ListSpace([self._mazestate2graph(self.maze_domain._goal)]) + + def _is_goal( + self, observation: D.T_agent[D.T_observation] + ) -> D.T_agent[D.T_predicate]: + return self.maze_domain._is_goal(self._graph2mazestate(observation)) + + def _get_initial_state_(self) -> D.T_state: + return self._mazestate2graph(self.maze_domain._get_initial_state_()) + + def _get_observation_space_(self) -> Space[D.T_observation]: + if self.discrete_features: + return GymSpace( + Graph( + node_space=Box(low=0, high=1, shape=(2,), dtype=self.walls.dtype), + edge_space=Discrete(2), + ) + ) + else: + return GymSpace( + Graph( + node_space=Box(low=0, high=1, shape=(2,), dtype=self.walls.dtype), + edge_space=Box(low=0, high=1, shape=(1,), dtype=self.edges.dtype), + ) + ) + + def _render_from(self, memory: D.T_state, **kwargs: Any) -> Any: + maze_memory = self._graph2mazestate(memory) + self.maze_domain._render_from(memory=maze_memory, **kwargs) + + +discrete_features = param_fixture("discrete_features", [False, True]) + + +@fixture +def maze_domain_factory(discrete_features): + return lambda: GraphMaze(discrete_features=discrete_features) + + +@fixture +def jsp_domain_factory(): + if sys.platform.startswith("win"): + pytest.skip("jsp-graph-env not importable on windows") + if not graph_jsp_env_available: + pytest.skip("jsp-graph-env not available") + return lambda: GraphJspDomain( + gym_env=DisjunctiveGraphJspEnv( + jps_instance=jsp, + perform_left_shift_if_possible=True, + normalize_observation_space=False, + flat_observation_space=False, + action_mode="task", + ) + ) + + +domain_factory = fixture_union( + "domain_factory", [maze_domain_factory, jsp_domain_factory] +) + + +def test_observation_space(domain_factory): + domain = domain_factory() + assert domain.reset() in domain.get_observation_space() + + +def test_ppo(domain_factory): + with StableBaseline( + domain_factory=domain_factory, + algo_class=GraphPPO, + baselines_policy="GraphInputPolicy", + learn_config={"total_timesteps": 100}, + ) as solver: + + solver.solve() + rollout( + domain=domain_factory(), + solver=solver, + max_steps=100, + num_episodes=1, + render=False, + ) + + +def test_ppo_user_gnn(domain_factory): + domain = domain_factory() + node_features_dim = int( + np.prod(domain.get_observation_space().unwrapped().node_space.shape) + ) + with StableBaseline( + domain_factory=domain_factory, + algo_class=GraphPPO, + baselines_policy="GraphInputPolicy", + learn_config={"total_timesteps": 100}, + policy_kwargs=dict( + features_extractor_class=GraphFeaturesExtractor, + features_extractor_kwargs=dict( + gnn_class=thg.nn.models.GAT, + gnn_kwargs=dict( + in_channels=node_features_dim, + hidden_channels=64, + num_layers=2, + dropout=0.2, + ), + gnn_out_dim=64, + features_dim=64, + ), + ), + ) as solver: + + solver.solve() + rollout( + domain=domain_factory(), + solver=solver, + max_steps=100, + num_episodes=1, + render=False, + ) + + +class MyReductionLayer(th.nn.Module): + def __init__(self, gnn_out_dim: int, features_dim: int): + super().__init__() + self.gnn_out_dim = gnn_out_dim + self.features_dim = features_dim + self.linear_layer = th.nn.Linear(gnn_out_dim, features_dim) + + def forward(self, embedded_observations: thg.data.Data) -> th.Tensor: + x, edge_index, batch = ( + embedded_observations.x, + embedded_observations.edge_index, + embedded_observations.batch, + ) + h = global_add_pool(x, batch) + h = self.linear_layer(h).relu() + return h + + +def test_ppo_user_reduction_layer(domain_factory): + with StableBaseline( + domain_factory=domain_factory, + algo_class=GraphPPO, + baselines_policy="GraphInputPolicy", + learn_config={"total_timesteps": 100}, + policy_kwargs=dict( + features_extractor_class=GraphFeaturesExtractor, + features_extractor_kwargs=dict( + gnn_out_dim=128, + features_dim=64, + reduction_layer_class=MyReductionLayer, + reduction_layer_kwargs=dict( + gnn_out_dim=128, + features_dim=64, + ), + ), + ), + ) as solver: + + solver.solve() + rollout( + domain=domain_factory(), + solver=solver, + max_steps=100, + num_episodes=1, + render=False, + )