From 68380cbfef58798e81ad67ca82ecd58ed6a66ce2 Mon Sep 17 00:00:00 2001 From: "Aaron (\"AJ\") Steers" Date: Tue, 19 Sep 2023 13:26:07 -0700 Subject: [PATCH] =?UTF-8?q?Source=20DuckDB:=20=E2=9C=A8=20Add=20MotherDuck?= =?UTF-8?q?=20support=20=F0=9F=A6=86=F0=9F=A6=86=20(#29428)?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Co-authored-by: Elena Felder <41136058+elefeint@users.noreply.github.com> --- .../destination-duckdb/devcontainer.json | 76 ++ .../connector_ops/connector_ops/utils.py | 2 +- .../connectors/connector_ops/pyproject.toml | 2 +- airbyte-ci/connectors/pipelines/README.md | 1 + .../pipelines/actions/environments.py | 60 +- .../connectors/pipelines/pyproject.toml | 2 +- .../tests/test_actions/test_environments.py | 24 +- .../destination-duckdb/.dockerignore | 3 + .../connectors/destination-duckdb/.gitignore | 2 + .../connectors/destination-duckdb/Dockerfile | 38 +- .../acceptance-test-config.yml | 10 + .../destination-duckdb/build.gradle | 8 - .../destination_duckdb/destination.py | 49 +- .../destination_duckdb/spec.json | 24 +- .../integration_tests/integration_test.py | 97 +- .../integration_tests/spec.json | 34 + .../destination-duckdb/metadata.yaml | 4 +- .../connectors/destination-duckdb/poetry.lock | 1115 +++++++++++++++++ .../destination-duckdb/pyproject.toml | 22 + .../destination-duckdb/requirements.txt | 1 - .../connectors/destination-duckdb/setup.py | 23 - .../unit_tests/unit_test.py | 1 - docs/integrations/destinations/duckdb.md | 43 +- 23 files changed, 1492 insertions(+), 149 deletions(-) create mode 100644 .devcontainer/destination-duckdb/devcontainer.json create mode 100644 airbyte-integrations/connectors/destination-duckdb/.gitignore create mode 100644 airbyte-integrations/connectors/destination-duckdb/acceptance-test-config.yml delete mode 100644 airbyte-integrations/connectors/destination-duckdb/build.gradle create mode 100644 airbyte-integrations/connectors/destination-duckdb/integration_tests/spec.json create mode 100644 airbyte-integrations/connectors/destination-duckdb/poetry.lock create mode 100644 airbyte-integrations/connectors/destination-duckdb/pyproject.toml delete mode 100644 airbyte-integrations/connectors/destination-duckdb/requirements.txt delete mode 100644 airbyte-integrations/connectors/destination-duckdb/setup.py diff --git a/.devcontainer/destination-duckdb/devcontainer.json b/.devcontainer/destination-duckdb/devcontainer.json new file mode 100644 index 000000000000..252a58a1cf38 --- /dev/null +++ b/.devcontainer/destination-duckdb/devcontainer.json @@ -0,0 +1,76 @@ +// For format details, see https://aka.ms/devcontainer.json. For config options, see the +// README at: https://github.com/devcontainers/templates/tree/main/src/python +{ + "name": "DuckDB Destination Connector DevContainer (Python)", + + // Or use a Dockerfile or Docker Compose file. More info: https://containers.dev/guide/dockerfile + "image": "mcr.microsoft.com/devcontainers/python:0-3.9", + + // Features to add to the dev container. More info: https://containers.dev/features. + "features": { + "ghcr.io/devcontainers-contrib/features/poetry:2": {}, + "ghcr.io/devcontainers/features/docker-in-docker": {} + }, + "overrideFeatureInstallOrder": [ + // Deterministic order maximizes cache reuse + "ghcr.io/devcontainers-contrib/features/poetry", + "ghcr.io/devcontainers/features/docker-in-docker" + ], + + "workspaceFolder": "/workspaces/airbyte/airbyte-integrations/connectors/destination-duckdb", + + // Configure tool-specific properties. + "customizations": { + "vscode": { + "extensions": [ + // Python extensions: + "charliermarsh.ruff", + "matangover.mypy", + "ms-python.black", + "ms-python.python", + "ms-python.vscode-pylance", + + // Toml support + "tamasfe.even-better-toml", + + // Yaml and JSON Schema support: + "redhat.vscode-yaml", + + // Contributing: + "GitHub.vscode-pull-request-github" + ], + "settings": { + "extensions.ignoreRecommendations": true, + "git.openRepositoryInParentFolders": "always", + "python.defaultInterpreterPath": ".venv/bin/python", + "python.interpreter.infoVisibility": "always", + "python.terminal.activateEnvironment": true, + "python.testing.pytestEnabled": true, + "python.testing.cwd": "/workspaces/airbyte/airbyte-integrations/connectors/destination-duckdb", + "python.testing.pytestArgs": [ + "--rootdir=/workspaces/airbyte/airbyte-integrations/connectors/destination-duckdb", + "." + ] + } + } + }, + "containerEnv": { + "POETRY_VIRTUALENVS_IN_PROJECT": "true" + }, + + // Mark the root directory as 'safe' for git. + "initializeCommand": "git config --add safe.directory /workspaces/airbyte", + + // Use 'postCreateCommand' to run commands after the container is created. + // Post-create tasks: + // 1. Create a symlink directory. + // 2. Create symlinks for the devcontainer.json and docs markdown file. + // 3. Install the Python/Poetry dependencies. + "postCreateCommand": "mkdir -p ./.symlinks && echo '*' > ./.symlinks/.gitignore && ln -sf /workspaces/airbyte/.devcontainer/destination-duckdb/devcontainer.json ./.symlinks/devcontainer.json && ln -sf /workspaces/airbyte/docs/integrations/destinations/duckdb.md ./.symlinks/duckdb-docs.md && poetry install" + + // Use 'forwardPorts' to make a list of ports inside the container available locally. + // "forwardPorts": [], + + // Uncomment to connect as root instead. More info: https://aka.ms/dev-containers-non-root. + // "remoteUser": "root" +} diff --git a/airbyte-ci/connectors/connector_ops/connector_ops/utils.py b/airbyte-ci/connectors/connector_ops/connector_ops/utils.py index 32bf07a2dd1e..eec28bf8fefb 100644 --- a/airbyte-ci/connectors/connector_ops/connector_ops/utils.py +++ b/airbyte-ci/connectors/connector_ops/connector_ops/utils.py @@ -251,7 +251,7 @@ def metadata(self) -> Optional[dict]: def language(self) -> ConnectorLanguage: if Path(self.code_directory / self.technical_name.replace("-", "_") / "manifest.yaml").is_file(): return ConnectorLanguage.LOW_CODE - if Path(self.code_directory / "setup.py").is_file(): + if Path(self.code_directory / "setup.py").is_file() or Path(self.code_directory / "pyproject.toml").is_file(): return ConnectorLanguage.PYTHON try: with open(self.code_directory / "Dockerfile") as dockerfile: diff --git a/airbyte-ci/connectors/connector_ops/pyproject.toml b/airbyte-ci/connectors/connector_ops/pyproject.toml index f1531f73abe1..91eeaa61af07 100644 --- a/airbyte-ci/connectors/connector_ops/pyproject.toml +++ b/airbyte-ci/connectors/connector_ops/pyproject.toml @@ -4,7 +4,7 @@ build-backend = "poetry.core.masonry.api" [tool.poetry] name = "connector_ops" -version = "0.2.2" +version = "0.2.3" description = "Packaged maintained by the connector operations team to perform CI for connectors" authors = ["Airbyte "] diff --git a/airbyte-ci/connectors/pipelines/README.md b/airbyte-ci/connectors/pipelines/README.md index cb163514e2ad..7bbc59f28201 100644 --- a/airbyte-ci/connectors/pipelines/README.md +++ b/airbyte-ci/connectors/pipelines/README.md @@ -407,6 +407,7 @@ This command runs the Python tests for a airbyte-ci poetry package. ## Changelog | Version | PR | Description | |---------| --------------------------------------------------------- |-----------------------------------------------------------------------------------------------------------| +| 1.4.0 | [#30330](https://github.com/airbytehq/airbyte/pull/30330) | Add support for pyproject.toml as the prefered entry point for a connector package | | 1.3.0 | [#30461](https://github.com/airbytehq/airbyte/pull/30461) | Add `--use-local-cdk` flag to all connectors commands | | 1.2.3 | [#30477](https://github.com/airbytehq/airbyte/pull/30477) | Fix a test regression introduced the previous version. | | 1.2.2 | [#30438](https://github.com/airbytehq/airbyte/pull/30438) | Add workaround to always stream logs properly with --is-local. | diff --git a/airbyte-ci/connectors/pipelines/pipelines/actions/environments.py b/airbyte-ci/connectors/pipelines/pipelines/actions/environments.py index e52abc4a0c3d..f59060d15f5d 100644 --- a/airbyte-ci/connectors/pipelines/pipelines/actions/environments.py +++ b/airbyte-ci/connectors/pipelines/pipelines/actions/environments.py @@ -305,6 +305,42 @@ async def find_local_dependencies_in_pyproject_toml( return local_dependency_paths +def _install_python_dependencies_from_setup_py( + container: Container, + additional_dependency_groups: Optional[List] = None, +) -> Container: + install_connector_package_cmd = ["python", "-m", "pip", "install", "."] + container = container.with_exec(install_connector_package_cmd) + + if additional_dependency_groups: + # e.g. .[dev,tests] + group_string = f".[{','.join(additional_dependency_groups)}]" + group_install_cmd = ["python", "-m", "pip", "install", group_string] + + container = container.with_exec(group_install_cmd) + + return container + + +def _install_python_dependencies_from_requirements_txt(container: Container) -> Container: + install_requirements_cmd = ["python", "-m", "pip", "install", "-r", "requirements.txt"] + return container.with_exec(install_requirements_cmd) + + +def _install_python_dependencies_from_poetry( + container: Container, + additional_dependency_groups: Optional[List] = None, +) -> Container: + pip_install_poetry_cmd = ["python", "-m", "pip", "install", "poetry"] + poetry_disable_virtual_env_cmd = ["poetry", "config", "virtualenvs.create", "false"] + poetry_install_no_venv_cmd = ["poetry", "install", "--no-root"] + if additional_dependency_groups: + for group in additional_dependency_groups: + poetry_install_no_venv_cmd += ["--with", group] + + return container.with_exec(pip_install_poetry_cmd).with_exec(poetry_disable_virtual_env_cmd).with_exec(poetry_install_no_venv_cmd) + + async def with_installed_python_package( context: PipelineContext, python_environment: Container, @@ -324,9 +360,6 @@ async def with_installed_python_package( Returns: Container: A python environment container with the python package installed. """ - install_requirements_cmd = ["python", "-m", "pip", "install", "-r", "requirements.txt"] - install_connector_package_cmd = ["python", "-m", "pip", "install", "."] - container = with_python_package(context, python_environment, package_source_code_path, exclude=exclude) local_dependencies = await find_local_python_dependencies(context, package_source_code_path) @@ -334,19 +367,16 @@ async def with_installed_python_package( for dependency_directory in local_dependencies: container = container.with_mounted_directory("/" + dependency_directory, context.get_repo_dir(dependency_directory)) - has_setup_py, has_requirements_txt = await check_path_in_workdir(container, "setup.py"), await check_path_in_workdir( - container, "requirements.txt" - ) + has_setup_py = await check_path_in_workdir(container, "setup.py") + has_requirements_txt = await check_path_in_workdir(container, "requirements.txt") + has_pyproject_toml = await check_path_in_workdir(container, "pyproject.toml") - if has_setup_py: - container = container.with_exec(install_connector_package_cmd) - if has_requirements_txt: - container = container.with_exec(install_requirements_cmd) - - if additional_dependency_groups: - container = container.with_exec( - install_connector_package_cmd[:-1] + [install_connector_package_cmd[-1] + f"[{','.join(additional_dependency_groups)}]"] - ) + if has_pyproject_toml: + container = _install_python_dependencies_from_poetry(container) + elif has_setup_py: + container = _install_python_dependencies_from_setup_py(container, additional_dependency_groups) + elif has_requirements_txt: + container = _install_python_dependencies_from_requirements_txt(container) return container diff --git a/airbyte-ci/connectors/pipelines/pyproject.toml b/airbyte-ci/connectors/pipelines/pyproject.toml index 20667d75113d..8ef2aa6169d1 100644 --- a/airbyte-ci/connectors/pipelines/pyproject.toml +++ b/airbyte-ci/connectors/pipelines/pyproject.toml @@ -4,7 +4,7 @@ build-backend = "poetry.core.masonry.api" [tool.poetry] name = "pipelines" -version = "1.3.0" +version = "1.4.0" description = "Packaged maintained by the connector operations team to perform CI for connectors' pipelines" authors = ["Airbyte "] diff --git a/airbyte-ci/connectors/pipelines/tests/test_actions/test_environments.py b/airbyte-ci/connectors/pipelines/tests/test_actions/test_environments.py index f3e1a4a33c05..b934995e1cd7 100644 --- a/airbyte-ci/connectors/pipelines/tests/test_actions/test_environments.py +++ b/airbyte-ci/connectors/pipelines/tests/test_actions/test_environments.py @@ -13,8 +13,11 @@ @pytest.fixture -def python_connector() -> Connector: - return Connector("source-openweather") +def python_connectors() -> Connector: + return [ + Connector("source-openweather"), # setup.py based + Connector("destination-duckdb"), # pyproject.toml based + ] @pytest.fixture @@ -29,11 +32,12 @@ def context(dagger_client): return context -async def test_with_installed_python_package(context, python_connector): - python_environment = context.dagger_client.container().from_("python:3.10") - installed_connector_package = await environments.with_installed_python_package( - context, - python_environment, - str(python_connector.code_directory), - ) - await installed_connector_package.with_exec(["python", "main.py", "spec"]) +async def test_with_installed_python_package(context, python_connectors): + for python_connector in python_connectors: + python_environment = context.dagger_client.container().from_("python:3.10") + installed_connector_package = await environments.with_installed_python_package( + context, + python_environment, + str(python_connector.code_directory), + ) + await installed_connector_package.with_exec(["python", "main.py", "spec"]) diff --git a/airbyte-integrations/connectors/destination-duckdb/.dockerignore b/airbyte-integrations/connectors/destination-duckdb/.dockerignore index 07bca5ba6cb9..eebfe30ec17a 100644 --- a/airbyte-integrations/connectors/destination-duckdb/.dockerignore +++ b/airbyte-integrations/connectors/destination-duckdb/.dockerignore @@ -3,3 +3,6 @@ !main.py !destination_duckdb !setup.py +!pyproject.toml +!poetry.lock +!README.md diff --git a/airbyte-integrations/connectors/destination-duckdb/.gitignore b/airbyte-integrations/connectors/destination-duckdb/.gitignore new file mode 100644 index 000000000000..fbcd3cd78b74 --- /dev/null +++ b/airbyte-integrations/connectors/destination-duckdb/.gitignore @@ -0,0 +1,2 @@ +# Ignore symlinks created within the dev container +.symlinks diff --git a/airbyte-integrations/connectors/destination-duckdb/Dockerfile b/airbyte-integrations/connectors/destination-duckdb/Dockerfile index 159e8de1de35..e1438e9c946a 100644 --- a/airbyte-integrations/connectors/destination-duckdb/Dockerfile +++ b/airbyte-integrations/connectors/destination-duckdb/Dockerfile @@ -1,4 +1,4 @@ -FROM python:3.9.11 as base +FROM python:3.9.11 # FROM python:3.9.11-alpine3.15 as base # switched from alpine as there were tons of errors (in case you want to switch back to alpine) # - https://stackoverflow.com/a/57485724/5246670 @@ -6,37 +6,29 @@ FROM python:3.9.11 as base # - libstdc++ https://github.com/amancevice/docker-pandas/issues/12#issuecomment-717215043 # - musl-dev linux-headers g++ because of: https://stackoverflow.com/a/40407099/5246670 -# build and load all requirements -FROM base as builder WORKDIR /airbyte/integration_code -# upgrade pip to the latest version +# Upgrade system packages and install Poetry RUN apt-get update && apt-get -y upgrade \ - && pip install --upgrade pip + && pip install --upgrade pip \ + && pip install poetry -COPY setup.py ./ -# install necessary packages to a temporary folder -RUN pip install --prefix=/install . -# build a clean environment -FROM base -# RUN conda install -c conda-forge python-duckdb -WORKDIR /airbyte/integration_code - -# copy all loaded and built libraries to a pure basic image -COPY --from=builder /install /usr/local -# add default timezone settings -COPY --from=builder /usr/share/zoneinfo/Etc/UTC /etc/localtime -RUN echo "Etc/UTC" > /etc/timezone +# Copy only poetry.lock* in case it doesn't exist +COPY pyproject.toml poetry.lock* ./ +RUN poetry config virtualenvs.create false \ + && poetry install --no-root --no-dev -#adding duckdb manually (outside of setup.py - lots of errors) -RUN pip install duckdb - -# copy payload code only +# Copy code COPY main.py ./ COPY destination_duckdb ./destination_duckdb +# Timezone setup +COPY --from=python:3.9.11 /usr/share/zoneinfo/Etc/UTC /etc/localtime +RUN echo "Etc/UTC" > /etc/timezone + +# Entry point ENV AIRBYTE_ENTRYPOINT "python /airbyte/integration_code/main.py" ENTRYPOINT ["python", "/airbyte/integration_code/main.py"] -LABEL io.airbyte.version=0.1.0 +LABEL io.airbyte.version=0.2.0 LABEL io.airbyte.name=airbyte/destination-duckdb diff --git a/airbyte-integrations/connectors/destination-duckdb/acceptance-test-config.yml b/airbyte-integrations/connectors/destination-duckdb/acceptance-test-config.yml new file mode 100644 index 000000000000..c55fdbceee42 --- /dev/null +++ b/airbyte-integrations/connectors/destination-duckdb/acceptance-test-config.yml @@ -0,0 +1,10 @@ +connector_image: airbyte/destination-duckdb:dev +acceptance_tests: + spec: + tests: + - spec_path: integration_tests/spec.json + config_path: "integration_tests/config.json" + connection: + tests: + - config_path: "integration_tests/config.json" + status: "succeed" diff --git a/airbyte-integrations/connectors/destination-duckdb/build.gradle b/airbyte-integrations/connectors/destination-duckdb/build.gradle deleted file mode 100644 index fef6aa0dbd77..000000000000 --- a/airbyte-integrations/connectors/destination-duckdb/build.gradle +++ /dev/null @@ -1,8 +0,0 @@ -plugins { - id 'airbyte-python' - id 'airbyte-docker' -} - -airbytePython { - moduleDirectory 'destination_duckdb' -} diff --git a/airbyte-integrations/connectors/destination-duckdb/destination_duckdb/destination.py b/airbyte-integrations/connectors/destination-duckdb/destination_duckdb/destination.py index 99a07284c20b..a87de508c5df 100644 --- a/airbyte-integrations/connectors/destination-duckdb/destination_duckdb/destination.py +++ b/airbyte-integrations/connectors/destination-duckdb/destination_duckdb/destination.py @@ -25,6 +25,9 @@ def _get_destination_path(destination_path: str) -> str: Get a normalized version of the destination path. Automatically append /local/ to the start of the path """ + if destination_path.startswith("md:") or destination_path.startswith("motherduck:"): + return destination_path + if not destination_path.startswith("/local"): destination_path = os.path.join("/local", destination_path) @@ -37,9 +40,11 @@ def _get_destination_path(destination_path: str) -> str: return destination_path def write( - self, config: Mapping[str, Any], configured_catalog: ConfiguredAirbyteCatalog, input_messages: Iterable[AirbyteMessage] + self, + config: Mapping[str, Any], + configured_catalog: ConfiguredAirbyteCatalog, + input_messages: Iterable[AirbyteMessage], ) -> Iterable[AirbyteMessage]: - """ Reads the input stream of messages, config, and catalog to write data to the destination. @@ -56,17 +61,19 @@ def write( streams = {s.stream.name for s in configured_catalog.streams} logger.info(f"Starting write to DuckDB with {len(streams)} streams") - path = config.get("destination_path") + path = str(config.get("destination_path")) path = self._get_destination_path(path) - # check if file exists - logger.info(f"Opening DuckDB file at {path}") + # Get and register auth token if applicable + motherduck_api_key = str(config.get("motherduck_api_key")) + if motherduck_api_key: + os.environ["motherduck_token"] = motherduck_api_key + con = duckdb.connect(database=path, read_only=False) # create the tables if needed # con.execute("BEGIN TRANSACTION") for configured_stream in configured_catalog.streams: - name = configured_stream.stream.name table_name = f"_airbyte_raw_{name}" if configured_stream.destination_sync_mode == DestinationSyncMode.overwrite: @@ -82,7 +89,7 @@ def write( query = f""" CREATE TABLE IF NOT EXISTS {table_name} ( _airbyte_ab_id TEXT PRIMARY KEY, - _airbyte_emitted_at JSON, + _airbyte_emitted_at DATETIME, _airbyte_data JSON ) """ @@ -92,20 +99,16 @@ def write( buffer = defaultdict(list) for message in input_messages: - if message.type == Type.STATE: # flush the buffer for stream_name in buffer.keys(): - logger.info(f"flushing buffer for state: {message}") query = """ - INSERT INTO {table_name} + INSERT INTO {table_name} (_airbyte_ab_id, _airbyte_emitted_at, _airbyte_data) VALUES (?,?,?) """.format( table_name=f"_airbyte_raw_{stream_name}" ) - logger.info(f"query: {query}") - con.executemany(query, buffer[stream_name]) con.commit() @@ -120,13 +123,18 @@ def write( continue # add to buffer - buffer[stream].append((str(uuid.uuid4()), datetime.datetime.now().isoformat(), json.dumps(data))) + buffer[stream].append( + ( + str(uuid.uuid4()), + datetime.datetime.now().isoformat(), + json.dumps(data), + ) + ) else: logger.info(f"Message type {message.type} not supported, skipping") # flush any remaining messages for stream_name in buffer.keys(): - query = """ INSERT INTO {table_name} VALUES (?,?,?) @@ -150,11 +158,16 @@ def check(self, logger: AirbyteLogger, config: Mapping[str, Any]) -> AirbyteConn :return: AirbyteConnectionStatus indicating a Success or Failure """ try: - # parse the destination path - param_path = config.get("destination_path") - path = self._get_destination_path(param_path) + path = config.get("destination_path") + path = self._get_destination_path(path) + + if path.startswith("/local"): + logger.info(f"Using DuckDB file at {path}") + os.makedirs(os.path.dirname(path), exist_ok=True) + + if "motherduck_api_key" in config: + os.environ["motherduck_token"] = config["motherduck_api_key"] - os.makedirs(os.path.dirname(path), exist_ok=True) con = duckdb.connect(database=path, read_only=False) con.execute("SELECT 1;") diff --git a/airbyte-integrations/connectors/destination-duckdb/destination_duckdb/spec.json b/airbyte-integrations/connectors/destination-duckdb/destination_duckdb/spec.json index 2517ac9ed772..511dd3aa4482 100644 --- a/airbyte-integrations/connectors/destination-duckdb/destination_duckdb/spec.json +++ b/airbyte-integrations/connectors/destination-duckdb/destination_duckdb/spec.json @@ -1,9 +1,5 @@ { "documentationUrl": "https://docs.airbyte.io/integrations/destinations/duckdb", - "supported_destination_sync_modes": ["overwrite", "append"], - "supportsIncremental": true, - "supportsDBT": true, - "supportsNormalization": true, "connectionSpecification": { "$schema": "http://json-schema.org/draft-07/schema#", "title": "Destination Duckdb", @@ -11,16 +7,28 @@ "required": ["destination_path"], "additionalProperties": true, "properties": { + "motherduck_api_key": { + "title": "MotherDuck API Key", + "type": "string", + "description": "API key to use for authentication to a MotherDuck database.", + "airbyte_secret": true + }, "destination_path": { + "title": "Destination DB", "type": "string", - "description": "Path to the .duckdb file. The file will be placed inside that local mount. For more information check out our docs", - "example": "/local/destination.duckdb" + "description": "Path to the .duckdb file, or the text 'md:' to connect to MotherDuck. The file will be placed inside that local mount. For more information check out our docs", + "examples": ["/local/destination.duckdb", "md:", "motherduck:"] }, "schema": { + "title": "Destination Schema", "type": "string", - "description": "database schema, default for duckdb is main", + "description": "Database schema name, default for duckdb is 'main'.", "example": "main" } } - } + }, + "supportsIncremental": true, + "supportsNormalization": true, + "supportsDBT": true, + "supported_destination_sync_modes": ["overwrite", "append"] } diff --git a/airbyte-integrations/connectors/destination-duckdb/integration_tests/integration_test.py b/airbyte-integrations/connectors/destination-duckdb/integration_tests/integration_test.py index 255913dbd24a..81f4305e5759 100644 --- a/airbyte-integrations/connectors/destination-duckdb/integration_tests/integration_test.py +++ b/airbyte-integrations/connectors/destination-duckdb/integration_tests/integration_test.py @@ -2,12 +2,15 @@ # Copyright (c) 2023 Airbyte, Inc., all rights reserved. # +from __future__ import annotations + import json import os import random import string import tempfile from datetime import datetime +from pathlib import Path from typing import Any, Dict from unittest.mock import MagicMock @@ -27,23 +30,51 @@ ) from destination_duckdb import DestinationDuckdb +CONFIG_PATH = "integration_tests/config.json" -@pytest.fixture(autouse=True) -def disable_destination_modification(monkeypatch, request): - if "disable_autouse" in request.keywords: + +def pytest_generate_tests(metafunc): + if "config" not in metafunc.fixturenames: return + + configs: list[str] = ["local_file_config"] + if Path(CONFIG_PATH).is_file(): + configs.append("motherduck_config") else: - monkeypatch.setattr(DestinationDuckdb, "_get_destination_path", lambda _, x: x) + print( + f"Skipping MotherDuck tests because config file not found at: {CONFIG_PATH}" + ) + # for test_name in ["test_check_succeeds", "test_write"]: + metafunc.parametrize("config", configs, indirect=True) -@pytest.fixture(scope="module") -def local_file_config() -> Dict[str, str]: + +@pytest.fixture +def config(request) -> Dict[str, str]: # create a file "myfile" in "mydir" in temp directory - tmp_dir = tempfile.TemporaryDirectory() - test = os.path.join(str(tmp_dir), "test.duckdb") + if request.param == "local_file_config": + tmp_dir = tempfile.TemporaryDirectory() + test = os.path.join(str(tmp_dir.name), "test.duckdb") + yield {"destination_path": test} + + elif request.param == "motherduck_config": + yield json.loads(Path(CONFIG_PATH).read_text()) - # f1.write_text("text to myfile") - yield {"destination_path": test} + else: + raise ValueError(f"Unknown config type: {request.param}") + + +@pytest.fixture +def invalid_config() -> Dict[str, str]: + return {"destination_path": "/destination.duckdb"} + + +@pytest.fixture(autouse=True) +def disable_destination_modification(monkeypatch, request): + if "disable_autouse" in request.keywords: + return + else: + monkeypatch.setattr(DestinationDuckdb, "_get_destination_path", lambda _, x: x) @pytest.fixture(scope="module") @@ -60,10 +91,14 @@ def table_schema() -> str: @pytest.fixture -def configured_catalogue(test_table_name: str, table_schema: str) -> ConfiguredAirbyteCatalog: +def configured_catalogue( + test_table_name: str, table_schema: str +) -> ConfiguredAirbyteCatalog: append_stream = ConfiguredAirbyteStream( stream=AirbyteStream( - name=test_table_name, json_schema=table_schema, supported_sync_modes=[SyncMode.full_refresh, SyncMode.incremental] + name=test_table_name, + json_schema=table_schema, + supported_sync_modes=[SyncMode.full_refresh, SyncMode.incremental], ), sync_mode=SyncMode.incremental, destination_sync_mode=DestinationSyncMode.append, @@ -71,17 +106,14 @@ def configured_catalogue(test_table_name: str, table_schema: str) -> ConfiguredA return ConfiguredAirbyteCatalog(streams=[append_stream]) -@pytest.fixture -def invalid_config() -> Dict[str, str]: - return {"destination_path": "/destination.duckdb"} - - @pytest.fixture def airbyte_message1(test_table_name: str): return AirbyteMessage( type=Type.RECORD, record=AirbyteRecordMessage( - stream=test_table_name, data={"key1": "value1", "key2": 3}, emitted_at=int(datetime.now().timestamp()) * 1000 + stream=test_table_name, + data={"key1": "value1", "key2": 3}, + emitted_at=int(datetime.now().timestamp()) * 1000, ), ) @@ -91,28 +123,31 @@ def airbyte_message2(test_table_name: str): return AirbyteMessage( type=Type.RECORD, record=AirbyteRecordMessage( - stream=test_table_name, data={"key1": "value2", "key2": 2}, emitted_at=int(datetime.now().timestamp()) * 1000 + stream=test_table_name, + data={"key1": "value2", "key2": 2}, + emitted_at=int(datetime.now().timestamp()) * 1000, ), ) @pytest.fixture def airbyte_message3(): - return AirbyteMessage(type=Type.STATE, state=AirbyteStateMessage(data={"state": "1"})) + return AirbyteMessage( + type=Type.STATE, state=AirbyteStateMessage(data={"state": "1"}) + ) -@pytest.mark.parametrize("config", ["invalid_config"]) @pytest.mark.disable_autouse -def test_check_fails(config, request): - config = request.getfixturevalue(config) +def test_check_fails(invalid_config, request): destination = DestinationDuckdb() - status = destination.check(logger=MagicMock(), config=config) + status = destination.check(logger=MagicMock(), config=invalid_config) assert status.status == Status.FAILED -@pytest.mark.parametrize("config", ["local_file_config"]) -def test_check_succeeds(config, request): - config = request.getfixturevalue(config) +def test_check_succeeds( + config: dict[str, str], + request, +): destination = DestinationDuckdb() status = destination.check(logger=MagicMock(), config=config) assert status.status == Status.SUCCEEDED @@ -122,7 +157,6 @@ def _state(data: Dict[str, Any]) -> AirbyteMessage: return AirbyteMessage(type=Type.STATE, state=AirbyteStateMessage(data=data)) -@pytest.mark.parametrize("config", ["local_file_config"]) def test_write( config: Dict[str, str], request, @@ -132,9 +166,12 @@ def test_write( airbyte_message3: AirbyteMessage, test_table_name: str, ): - config = request.getfixturevalue(config) destination = DestinationDuckdb() - generator = destination.write(config, configured_catalogue, [airbyte_message1, airbyte_message2, airbyte_message3]) + generator = destination.write( + config, + configured_catalogue, + [airbyte_message1, airbyte_message2, airbyte_message3], + ) result = list(generator) assert len(result) == 1 diff --git a/airbyte-integrations/connectors/destination-duckdb/integration_tests/spec.json b/airbyte-integrations/connectors/destination-duckdb/integration_tests/spec.json new file mode 100644 index 000000000000..511dd3aa4482 --- /dev/null +++ b/airbyte-integrations/connectors/destination-duckdb/integration_tests/spec.json @@ -0,0 +1,34 @@ +{ + "documentationUrl": "https://docs.airbyte.io/integrations/destinations/duckdb", + "connectionSpecification": { + "$schema": "http://json-schema.org/draft-07/schema#", + "title": "Destination Duckdb", + "type": "object", + "required": ["destination_path"], + "additionalProperties": true, + "properties": { + "motherduck_api_key": { + "title": "MotherDuck API Key", + "type": "string", + "description": "API key to use for authentication to a MotherDuck database.", + "airbyte_secret": true + }, + "destination_path": { + "title": "Destination DB", + "type": "string", + "description": "Path to the .duckdb file, or the text 'md:' to connect to MotherDuck. The file will be placed inside that local mount. For more information check out our docs", + "examples": ["/local/destination.duckdb", "md:", "motherduck:"] + }, + "schema": { + "title": "Destination Schema", + "type": "string", + "description": "Database schema name, default for duckdb is 'main'.", + "example": "main" + } + } + }, + "supportsIncremental": true, + "supportsNormalization": true, + "supportsDBT": true, + "supported_destination_sync_modes": ["overwrite", "append"] +} diff --git a/airbyte-integrations/connectors/destination-duckdb/metadata.yaml b/airbyte-integrations/connectors/destination-duckdb/metadata.yaml index 3d751bfe1f80..b0314656d69d 100644 --- a/airbyte-integrations/connectors/destination-duckdb/metadata.yaml +++ b/airbyte-integrations/connectors/destination-duckdb/metadata.yaml @@ -2,7 +2,7 @@ data: connectorSubtype: database connectorType: destination definitionId: 94bd199c-2ff0-4aa2-b98e-17f0acb72610 - dockerImageTag: 0.1.0 + dockerImageTag: 0.2.0 dockerRepository: airbyte/destination-duckdb 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b/airbyte-integrations/connectors/destination-duckdb/pyproject.toml new file mode 100644 index 000000000000..57ae5b186393 --- /dev/null +++ b/airbyte-integrations/connectors/destination-duckdb/pyproject.toml @@ -0,0 +1,22 @@ +[tool.poetry] +name = "destination-duckdb" +version = "0.2.1" +description = "Destination implementation for Duckdb." +authors = ["Simon Späti, Airbyte"] +license = "MIT" +readme = "README.md" + +[tool.poetry.dependencies] +python = ">=3.8" +airbyte-cdk = "^0.51.6" +duckdb = "^0.8.1" + +[tool.poetry.group.dev.dependencies] +pytest = "^7.4.0" +ruff = "^0.0.286" +black = "^23.7.0" +mypy = "^1.5.1" + +[build-system] +requires = ["poetry-core"] +build-backend = "poetry.core.masonry.api" diff --git a/airbyte-integrations/connectors/destination-duckdb/requirements.txt b/airbyte-integrations/connectors/destination-duckdb/requirements.txt deleted file mode 100644 index d6e1198b1ab1..000000000000 --- a/airbyte-integrations/connectors/destination-duckdb/requirements.txt +++ /dev/null @@ -1 +0,0 @@ --e . diff --git a/airbyte-integrations/connectors/destination-duckdb/setup.py b/airbyte-integrations/connectors/destination-duckdb/setup.py deleted file mode 100644 index b5a2272c46d6..000000000000 --- a/airbyte-integrations/connectors/destination-duckdb/setup.py +++ /dev/null @@ -1,23 +0,0 @@ -# -# Copyright (c) 2023 Airbyte, Inc., all rights reserved. -# - - -from setuptools import find_packages, setup - -MAIN_REQUIREMENTS = ["airbyte-cdk", "duckdb"] # duckdb added manually to dockerfile due to lots of errors - -TEST_REQUIREMENTS = ["pytest~=6.1"] - -setup( - name="destination_duckdb", - description="Destination implementation for Duckdb.", - author="Simon Späti", - author_email="contact@airbyte.io", - packages=find_packages(), - install_requires=MAIN_REQUIREMENTS, - package_data={"": ["*.json"]}, - extras_require={ - "tests": TEST_REQUIREMENTS, - }, -) diff --git a/airbyte-integrations/connectors/destination-duckdb/unit_tests/unit_test.py b/airbyte-integrations/connectors/destination-duckdb/unit_tests/unit_test.py index 4c83289a9b31..4edc22c51af2 100644 --- a/airbyte-integrations/connectors/destination-duckdb/unit_tests/unit_test.py +++ b/airbyte-integrations/connectors/destination-duckdb/unit_tests/unit_test.py @@ -7,7 +7,6 @@ def test_read_invalid_path(): - invalid_input = "/test.duckdb" with pytest.raises(ValueError): _ = DestinationDuckdb._get_destination_path(invalid_input) diff --git a/docs/integrations/destinations/duckdb.md b/docs/integrations/destinations/duckdb.md index 352975308ec4..aa01e1e406ff 100644 --- a/docs/integrations/destinations/duckdb.md +++ b/docs/integrations/destinations/duckdb.md @@ -1,29 +1,53 @@ # DuckDB -:::danger + -This destination is meant to be used on a local workstation and won't work on Kubernetes +:::caution + +Local file-based DBs will not work in Airbyte Cloud or Kubernetes. Please use MotherDuck when running in Airbyte Cloud. ::: + + ## Overview -[DuckDB](https://duckdb.org/) is an in-process SQL OLAP database management system and this destination is meant to use locally if you have multiple smaller sources such as GitHub repos, some social media and local CSVs or files you want to run analytics workloads on. +[DuckDB](https://duckdb.org/) is an in-process SQL OLAP database management system and this destination is meant to use locally if you have multiple smaller sources such as GitHub repos, some social media and local CSVs or files you want to run analytics workloads on. This destination writes data to the [MotherDuck](https://motherduck.com) service, or to a file on the _local_ filesystem on the host running Airbyte. + +For file-based DBs, data is written to `/tmp/airbyte_local` by default. To change this location, modify the `LOCAL_ROOT` environment variable for Airbyte. + +## Use with MotherDuck + +This DuckDB destination is compatible with [MotherDuck](https://motherduck.com). -This destination writes data to a file on the _local_ filesystem on the host running Airbyte. By default, data is written to `/tmp/airbyte_local`. To change this location, modify the `LOCAL_ROOT` environment variable for Airbyte. +### Specifying a MotherDuck Database + +To specify a MotherDuck-hosted database as your destination, simply provide your database uri with the normal `md:` database prefix in the `destination_path` configuration option. + +:::caution + +We do not recommend providing your API token in the `md:` connection string, as this may cause your token to be printed to execution logs. Please use the `MotherDuck API Key`` setting instead. + +::: + +### Authenticating to MotherDuck + +For authentication, you can can provide your [MotherDuck Service Credential](https://motherduck.com/docs/authenticating-to-motherduck/#syntax) as the `motherduck_api_key` configuration option. ### Sync Overview #### Output schema -If you set [Normalization](https://docs.airbyte.com/understanding-airbyte/basic-normalization/), source data will be normalized to a tabular form. Let's say you have a source such as GitHub with nested JSONs; the Normalization ensures you end up with tables and columns. Suppose you have a many-to-many relationship between the users and commits. Normalization will create separate tables for it. The end state is the [third normal form](https://en.wikipedia.org/wiki/Third_normal_form) (3NF). - Each table will contain 3 columns: - `_airbyte_ab_id`: a uuid assigned by Airbyte to each event that is processed. - `_airbyte_emitted_at`: a timestamp representing when the event was pulled from the data source. - `_airbyte_data`: a json blob representing with the event data. +### Normalization + +If you set [Normalization](https://docs.airbyte.com/understanding-airbyte/basic-normalization/), source data will be normalized to a tabular form. Let's say you have a source such as GitHub with nested JSONs; the Normalization ensures you end up with tables and columns. Suppose you have a many-to-many relationship between the users and commits. Normalization will create separate tables for it. The end state is the [third normal form](https://en.wikipedia.org/wiki/Third_normal_form) (3NF). + #### Features | Feature | Supported | | @@ -37,7 +61,9 @@ Each table will contain 3 columns: This integration will be constrained by the speed at which your filesystem accepts writes. -## Getting Started + + +## Getting Started with Local Database Files The `destination_path` will always start with `/local` whether it is specified by the user or not. Any directory nesting within local will be mapped onto the local mount. @@ -74,8 +100,11 @@ docker cp airbyte-server:/tmp/airbyte_local/{destination_path} . Note: If you are running Airbyte on Windows with Docker backed by WSL2, you have to use similar step as above or refer to this [link](../../operator-guides/locating-files-local-destination.md) for an alternative approach. + + ## Changelog | Version | Date | Pull Request | Subject | | :------ | :--------- | :------------------------------------------------------- | :--------------------- | +| 0.2.0 | 2022-10-14 | [](https://github.com/airbytehq/airbyte/pull/) | Add support for MotherDuck | | 0.1.0 | 2022-10-14 | [17494](https://github.com/airbytehq/airbyte/pull/17494) | New DuckDB destination |