diff --git a/specs/airr-schema-openapi3.yaml b/specs/airr-schema-openapi3.yaml index 1b682c49f..336db3b70 100644 --- a/specs/airr-schema-openapi3.yaml +++ b/specs/airr-schema-openapi3.yaml @@ -4578,6 +4578,15 @@ Cell: miairr: defined adc-query-support: true name: Cell-associated receptors + reactivity_measurements: + type: array + nullable: true + description: > + Array of reactivity measurement identifiers for this Cell object + title: Reactivity measurements + items: + type: string + example: [id1, id2] repertoire_id: type: string nullable: true @@ -4733,7 +4742,7 @@ Receptor: receptor_id: type: string nullable: false - description: ID of the current Receptor object, unique within the local repository. + description: ID of the current Receptor object, globally unique. title: Receptor ID example: TCR-MM-012345 x-airr: @@ -4817,14 +4826,18 @@ Receptor: reactivity_measurements: type: array nullable: true - description: Records of reactivity measurement + description: > + Array of reactivity measurement identifiers for this Receptor object + title: Reactivity measurements items: - $ref: '#/ReceptorReactivity' + type: string + example: [id1, id2] ReceptorReactivity: type: object required: + - receptor_reactivity_id - ligand_type - antigen_type - antigen @@ -4833,6 +4846,14 @@ ReceptorReactivity: - reactivity_value - reactivity_unit properties: + receptor_reactivity_id: + type: string + nullable: false + description: ID of this ReceptorReactivity object, globally unique. + title: Receptor Reactivity ID + x-airr: + identifier: true + adc-query-support: true ligand_type: type: string nullable: false @@ -4883,6 +4904,13 @@ ReceptorReactivity: top_node: id: NCBITAXON:1 label: root + peptide_aa_string: + type: string + nullable: true + description: AA string of the peptide + title: Peptide AA String + x-airr: + adc-query-support: true peptide_start: type: integer nullable: true @@ -4951,6 +4979,7 @@ ReceptorReactivity: - ELISA - cytometry - biological_activity + - MHC_peptide_multimer description: The methodology used to assess expression (assay implemented in experiment) reactivity_readout: type: string @@ -4962,6 +4991,7 @@ ReceptorReactivity: - on_rate - off_rate - pathogen_inhibition + - barcode_count description: Reactivity measurement read-out example: cytokine release reactivity_value: