This repository includes the data analysis pipeline and commands which are described in the article "Steller’s sea cow paleogenomes explain their “tree bark” skin phenotype and show signs of adaptation to cold environment"
Please refer the pipeline file for the run flow
All the options/parameters described in the pipeline may change depending on which versions you are using.
Please refer to the article for the exact version which we used.
Please feel free to contact me if you have any questions or concerns