From eab98acffbb8ea63433eafb481a47fa84a87756d Mon Sep 17 00:00:00 2001
From: Dr Griffith Rees <griff.rees@gmail.com>
Date: Thu, 18 Jan 2024 13:55:45 -0500
Subject: [PATCH] fix(ci): fix `quarto` render without quartodoc and better
 speed

---
 compose/docs/Dockerfile | 27 +++++++++++++++++++++------
 environment.yml         |  2 +-
 2 files changed, 22 insertions(+), 7 deletions(-)

diff --git a/compose/docs/Dockerfile b/compose/docs/Dockerfile
index a840dddc..656d736c 100644
--- a/compose/docs/Dockerfile
+++ b/compose/docs/Dockerfile
@@ -1,9 +1,10 @@
 ARG QUARTO_VERSION="1.3.450"
 
-FROM ghcr.io/quarto-dev/quarto:${QUARTO_VERSION} AS builder
+# FROM ghcr.io/quarto-dev/quarto:${QUARTO_VERSION} AS builder
+FROM registry.gitlab.com/quarto-forge/docker/polyglot as builder
 
 ARG PORT=8080
-ARG py_ver=3.9
+ARG py_ver=3.10
 ENV DEBIAN_FRONTEND=noninteractive
 
 # ARG RIG_VERSION="latest"
@@ -22,11 +23,25 @@ WORKDIR /app
 EXPOSE ${PORT}:${PORT}
 
 # RUN quarto preview --port ${PORT}:${PORT}
-RUN apt-get update && apt-get install -y python${py_ver} python3-pip r-base r-base-dev
-RUN pip3 install quartodoc && quartodoc build
-RUN Rscript -e 'install.packages("rmarkdown", repos="https://cloud.r-project.org")'
+# RUN apt-get update && apt-get install -y python${py_ver} python3-pip r-base r-base-dev
+# RUN micromamba install -y -n base quartodoc && quartodoc build
 
-RUN quarto render
+RUN micromamba config append channels conda-forge && \
+    micromamba install -y -n base quartodoc
+
+
+USER root
+
+# RUN micromamba run -n base quartodoc build && \
+#     micromamba run -n base quarto render
+
+RUN micromamba run -n base quarto render
+
+# RUN quartodoc build
+
+# RUN Rscript -e 'install.packages("rmarkdown", repos="https://cloud.r-project.org")'
+
+# RUN micromamba run -n base quarto render
 
 FROM httpd:alpine
 COPY --from=builder /app/_site/ /usr/local/apache2/htdocs/
diff --git a/environment.yml b/environment.yml
index a44857e3..312016d5 100644
--- a/environment.yml
+++ b/environment.yml
@@ -50,7 +50,7 @@ dependencies:
     - pytest-cov==4.1.0
     - pytest-sugar==0.9.7
     - pytz==2022.5
-    - quartodoc==0.6.3
+    - quartodoc==0.7.2
     - rasterio==1.3.3
     - rioxarray==0.12.3
     - scipy==1.10.0