trans2express_env.yml

name: trans2express_env
channels:
  - bioconda
  - conda-forge
dependencies:
  - python=3.9
  - fastp=0.23.4
  - porechop=0.2.4
  - spades=4.0.0
  - transdecoder=5.7.1
  - cd-hit=4.8.1
  - diamond=2.1.8
  - pip
  - pip:
    - beautifulsoup4==4.12.2
    - bio==1.5.9
    - biopython==1.81
    - biothings-client==0.3.0
    - certifi==2023.7.22
    - charset-normalizer==3.2.0
    - gprofiler-official==1.0.0
    - idna==3.4
    - lxml==4.9.3
    - mygene==3.2.2
    - numpy==1.25.2
    - packaging==23.1
    - pandas==2.1.0
    - platformdirs==3.10.0
    - pooch==1.7.0
    - python-dateutil==2.8.2
    - pytz==2023.3.post1
    - requests==2.31.0
    - six==1.16.0
    - soupsieve==2.5
    - tqdm==4.66.1
    - tzdata==2023.3
    - urllib3==2.0.4