Trying to run trans2express from a custom conda environment

[eggrandio]

Hello,

I have created a conda environment with (what I think) all the requisite programs with:

conda activate trans2express
mamba install -y diamond beautifulsoup4 biopython biothings_client pandas \
certifi charset-normalizer gprofiler-official idna mygene numpy packaging \
platformdirs pooch python-dateutil pytz requests six soupsieve tqdm tzdata \
urllib3 diamond fastp porechop spades transdecoder cd-hit

However, when I try to run trans2express, it cannot find the corresponding programs.

What should I put into the CONFIGURATIONS.txt file?

I can run each program from terminal from within the conda environment.

[albidgy]

Hello,

Please send me the logs file that trans2express gives me to the email: [email protected]

[albidgy]

I have added the ability to install all required programs and packages to the conda environment. Re-download trans2express, navigate to the directory and run the command:

bash install.sh