From 925bceda33dffa197dbd216ccf72415865890b62 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Thu, 6 Apr 2023 09:44:34 +0000 Subject: [PATCH 1/7] Update nibabel requirement from ~=5.0.1 to ~=5.1.0 Updates the requirements on [nibabel](https://github.com/nipy/nibabel) to permit the latest version. - [Release notes](https://github.com/nipy/nibabel/releases) - [Changelog](https://github.com/nipy/nibabel/blob/master/Changelog) - [Commits](https://github.com/nipy/nibabel/compare/5.0.1...5.1.0) --- updated-dependencies: - dependency-name: nibabel dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index 55a9cd5..899e324 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,4 +1,4 @@ -nibabel~=5.0.1 +nibabel~=5.1.0 numpy~=1.24.2 pandas~=2.0.0 pytest~=7.2.1 From 751048b1308773ae2c53c46710bb5a8227a259cd Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Fri, 23 Jun 2023 09:26:01 +0000 Subject: [PATCH 2/7] Update scikit-image requirement from ~=0.20.0 to ~=0.21.0 Updates the requirements on [scikit-image](https://github.com/scikit-image/scikit-image) to permit the latest version. - [Release notes](https://github.com/scikit-image/scikit-image/releases) - [Changelog](https://github.com/scikit-image/scikit-image/blob/main/RELEASE.txt) - [Commits](https://github.com/scikit-image/scikit-image/compare/v0.20.0...v0.21.0) --- updated-dependencies: - dependency-name: scikit-image dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index 73787c3..10363bd 100644 --- a/requirements.txt +++ b/requirements.txt @@ -2,6 +2,6 @@ nibabel~=5.0.1 numpy~=1.24.2 pandas~=2.0.2 pytest~=7.3.2 -scikit-image~=0.20.0 +scikit-image~=0.21.0 tensorflow~=2.11.0 wget~=3.2 \ No newline at end of file From fc497691becb4aea5035d70c3a7badced1656349 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 24 Jul 2023 09:55:55 +0000 Subject: [PATCH 3/7] Update pytest requirement from ~=7.3.2 to ~=7.4.0 Updates the requirements on [pytest](https://github.com/pytest-dev/pytest) to permit the latest version. - [Release notes](https://github.com/pytest-dev/pytest/releases) - [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst) - [Commits](https://github.com/pytest-dev/pytest/compare/7.3.2...7.4.0) --- updated-dependencies: - dependency-name: pytest dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index 40107da..80f8b1f 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,7 +1,7 @@ nibabel~=5.1.0 numpy~=1.24.2 pandas~=2.0.2 -pytest~=7.3.2 +pytest~=7.4.0 scikit-image~=0.21.0 tensorflow~=2.11.0 wget~=3.2 \ No newline at end of file From b79d6d3138047c9d3c6031d48442ba1c3423cd50 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 24 Jul 2023 11:21:11 +0000 Subject: [PATCH 4/7] Update tensorflow requirement from ~=2.11.0 to ~=2.13.0 Updates the requirements on [tensorflow](https://github.com/tensorflow/tensorflow) to permit the latest version. - [Release notes](https://github.com/tensorflow/tensorflow/releases) - [Changelog](https://github.com/tensorflow/tensorflow/blob/master/RELEASE.md) - [Commits](https://github.com/tensorflow/tensorflow/compare/v2.11.0...v2.13.0) --- updated-dependencies: - dependency-name: tensorflow dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index 80f8b1f..b58e3bd 100644 --- a/requirements.txt +++ b/requirements.txt @@ -3,5 +3,5 @@ numpy~=1.24.2 pandas~=2.0.2 pytest~=7.4.0 scikit-image~=0.21.0 -tensorflow~=2.11.0 +tensorflow~=2.13.0 wget~=3.2 \ No newline at end of file From b78ea519d513f328b41693a46e9765b618b393ab Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 24 Jul 2023 13:11:25 +0000 Subject: [PATCH 5/7] Update pandas requirement from ~=2.0.2 to ~=2.0.3 Updates the requirements on [pandas](https://github.com/pandas-dev/pandas) to permit the latest version. - [Release notes](https://github.com/pandas-dev/pandas/releases) - [Commits](https://github.com/pandas-dev/pandas/compare/v2.0.2...v2.0.3) --- updated-dependencies: - dependency-name: pandas dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index b58e3bd..c3f1010 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,6 +1,6 @@ nibabel~=5.1.0 numpy~=1.24.2 -pandas~=2.0.2 +pandas~=2.0.3 pytest~=7.4.0 scikit-image~=0.21.0 tensorflow~=2.13.0 From 925e03c02ae3f0b3d4ac183b08fe444a1403b52a Mon Sep 17 00:00:00 2001 From: Alex Daniel Date: Mon, 24 Jul 2023 15:28:03 +0100 Subject: [PATCH 6/7] Adjust requirements to greater than or equal to --- requirements.txt | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/requirements.txt b/requirements.txt index c3f1010..43e26fa 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,7 +1,7 @@ -nibabel~=5.1.0 -numpy~=1.24.2 -pandas~=2.0.3 -pytest~=7.4.0 -scikit-image~=0.21.0 -tensorflow~=2.13.0 -wget~=3.2 \ No newline at end of file +nibabel>=5.1.0 +numpy>=1.24.2 +pandas>=2.0.3 +pytest>=7.4.0 +scikit-image>=0.20.0 +tensorflow>=2.13.0 +wget>=3.2 \ No newline at end of file From 0f5bef610ec34e6515c5b3f6bbd4e3320e7192ca Mon Sep 17 00:00:00 2001 From: Alex Daniel Date: Mon, 24 Jul 2023 15:31:17 +0100 Subject: [PATCH 7/7] New version related changes --- CHANGELOG.md | 7 +++++++ CITATION.cff | 4 ++-- renal_segmentor.py | 2 +- setup.py | 2 +- 4 files changed, 11 insertions(+), 4 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index d6e1841..fbf4664 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,5 +1,12 @@ # Changelog +## [1.3.8] - 2023-07-24 + +### Changed +* Lots of dependencies +* Dependencies are now greater than or equal to (>=) rather than compatible versions (~=) + + ## [1.3.7] - 2023-06-23 ### Changed diff --git a/CITATION.cff b/CITATION.cff index 3871f83..a136d64 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -8,7 +8,7 @@ authors: given-names: "Susan T" orcid: "https://orcid.org/0000-0003-0903-7507" title: "Renal Segmentor" -version: 1.3.7 +version: 1.3.8 doi: 10.5281/zenodo.5796277 -date-released: 2023-06-23 +date-released: 2023-07-24 url: "https://github.com/alexdaniel654/Renal_Segmentor" \ No newline at end of file diff --git a/renal_segmentor.py b/renal_segmentor.py index a7f97ff..e3f31d7 100644 --- a/renal_segmentor.py +++ b/renal_segmentor.py @@ -114,7 +114,7 @@ def resource_path(relative_path): 'name': 'Renal Segmentor', 'description': 'Automatically segment the kidneys from MRI ' 'data.', - 'version': '1.3.7', + 'version': '1.3.8', 'copyright': '2023', 'website': 'https://github.com/alexdaniel654/Renal_Segmentor', 'developer': 'https://www.researchgate.net/profile/' diff --git a/setup.py b/setup.py index eb06d8a..8d87414 100644 --- a/setup.py +++ b/setup.py @@ -11,7 +11,7 @@ setup( name="renalsegmentor", - version="1.3.7", + version="1.3.8", description="Segment kidneys from MRI data", long_description=long_description, long_description_content_type="text/markdown",