From 9385fbe1d380f1e02bb16326582b9f8e1d308b04 Mon Sep 17 00:00:00 2001
From: Alex Lancaster <alexlancaster@users.noreply.github.com>
Date: Sun, 17 Nov 2024 21:10:19 -0500
Subject: [PATCH] mostly whitespace fixes

---
 setup.py              |  2 --
 src/PyPop/__init__.py | 36 +++++++++++++++++++++++++++++++++++-
 src/PyPop/citation.py |  1 -
 3 files changed, 35 insertions(+), 4 deletions(-)

diff --git a/setup.py b/setup.py
index 1bd801d69..3097aff54 100644
--- a/setup.py
+++ b/setup.py
@@ -65,7 +65,6 @@ def run(self):
                     os.unlink(ext_file)
         clean.clean.run(self)
 
-            
 # look for libraries in _PREFIX
 library_dirs = [os.path.join(_PREFIX, "lib")]
 include_dirs = [os.path.join(_PREFIX, "include")]
@@ -299,5 +298,4 @@ def run(self):
                  # enable the custom build
                  'build_py': CustomBuildPy,
                  },
-
        )
diff --git a/src/PyPop/__init__.py b/src/PyPop/__init__.py
index 49313f83d..937c70c96 100644
--- a/src/PyPop/__init__.py
+++ b/src/PyPop/__init__.py
@@ -1,3 +1,38 @@
+#!/usr/bin/env python
+
+# This file is part of PyPop
+
+# Copyright (C) 2017. 
+# All Rights Reserved.
+
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2, or (at your option)
+# any later version.
+
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+# General Public License for more details.
+
+# You should have received a copy of the GNU General Public License
+# along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA
+# 02111-1307, USA.
+
+# IN NO EVENT SHALL REGENTS BE LIABLE TO ANY PARTY FOR DIRECT,
+# INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING
+# LOST PROFITS, ARISING OUT OF THE USE OF THIS SOFTWARE AND ITS
+# DOCUMENTATION, EVEN IF REGENTS HAS BEEN ADVISED OF THE POSSIBILITY
+# OF SUCH DAMAGE.
+
+# REGENTS SPECIFICALLY DISCLAIMS ANY WARRANTIES, INCLUDING, BUT NOT
+# LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
+# FOR A PARTICULAR PURPOSE. THE SOFTWARE AND ACCOMPANYING
+# DOCUMENTATION, IF ANY, PROVIDED HEREUNDER IS PROVIDED "AS
+# IS". REGENTS HAS NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT,
+# UPDATES, ENHANCEMENTS, OR MODIFICATIONS.
+
 import platform
 
 __pkgname__ = 'pypop-genomics'
@@ -21,7 +56,6 @@
 
 platform_info="[Python {python_version} | {system} | {arch}]".format(python_version=platform.python_version(), system=platform.platform(), arch=platform.machine())
 
-
 import locale
 import logging
 import platform
diff --git a/src/PyPop/citation.py b/src/PyPop/citation.py
index 7ee8bc58e..7d0cadc08 100644
--- a/src/PyPop/citation.py
+++ b/src/PyPop/citation.py
@@ -70,4 +70,3 @@ def convert_citation_formats(build_lib, citation_path):
 if __name__ == "__main__":
 
     convert_citation_formats("src", "CITATION.cff")
-