From 0b1c9a8116b7f833bfd33b779ca6c0ba4e7c728e Mon Sep 17 00:00:00 2001
From: Valerio Arnaboldi <valearna@caltech.edu>
Date: Mon, 16 Jul 2018 08:52:59 -0700
Subject: [PATCH] new script to diff json reports

generate diffs between json reports for curator testing
---
 diff_json_reports.py | 35 +++++++++++++++++++++++++++++++++++
 1 file changed, 35 insertions(+)
 create mode 100755 diff_json_reports.py

diff --git a/diff_json_reports.py b/diff_json_reports.py
new file mode 100755
index 0000000..215d831
--- /dev/null
+++ b/diff_json_reports.py
@@ -0,0 +1,35 @@
+#!/usr/bin/env python3
+
+import argparse
+import json
+
+
+def main():
+    parser = argparse.ArgumentParser(description="Create diff file between reports in json format")
+    parser.add_argument('reports', metavar='report_file', type=str, nargs=2, help='report file to diff')
+
+    args = parser.parse_args()
+
+    old_report = args.reports[0]
+    new_report = args.reports[1]
+
+    old_gene_descs = {}
+    diff_descs = []
+
+    with open(old_report, 'r') as f:
+        old_report_data = json.load(f)["data"]
+    for genedesc in old_report_data:
+        old_gene_descs[genedesc["gene_id"]] = genedesc
+
+    with open(new_report, 'r') as f:
+        new_report_data = json.load(f)["data"]
+
+    for genedesc in new_report_data:
+        if genedesc["description"] != old_gene_descs[genedesc["gene_id"]]["description"]:
+            diff_descs.append(genedesc)
+
+    print(json.dumps(diff_descs, indent=True))
+
+
+if __name__ == '__main__':
+    main()