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Calculation/Prepation for the First Column of Spatial Transcriptomics (ST) Count Data File #40

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kevin-de-granta opened this issue Nov 9, 2023 · 0 comments
Open

Calculation/Prepation for the First Column of Spatial Transcriptomics (ST) Count Data File #40

kevin-de-granta opened this issue Nov 9, 2023 · 0 comments

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@kevin-de-granta
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kevin-de-granta commented Nov 9, 2023 •
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Stereoscope is awesome!
Just, could you please kindly tell us, when preparing for Spatial Transcriptomics (ST) Count Data File, how we can calculate for the first column? For example, for contents like "4.83x31.08", "19.98x24.93", "15.87x9.01".
It would be much more appreciated if you could offer some explanations on the meaning of quoted strings above.

More Info:
cat st-hippo1.tsv | cut -f 1,2,3 | head -n 5
Gnai3 Cdc45
4.83x31.08 0.0 0.0
19.98x24.93 0.0 0.0
15.87x9.01 1.0 0.0
5.83x27.97 1.0 0.0
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