Skip to content

Issues: ambj/MuPeXI

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

18 Open 21 Closed
18 Open 21 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

AssertionError: Allele "HLA-B*07:02" not stated in NetMHCpan output
#43 opened Oct 26, 2023 by mimifp
1
Unable to access the file http://www.cbs.dtu.dk/services/MuPeXI/SupplTable1.csv described at "MuPeXI: prediction of neo-epitopes from tumor sequencing data​"
#42 opened Aug 14, 2023 by zhaoxiaofei
1
AssertionError: Allele "HLA-A02:01" not stated in NetMHCpan output
#41 opened Nov 18, 2021 by Pchaskar
1
Reference Files for the given example VCF
#40 opened Jul 29, 2021 by ALogandha
1
Mouse reference sequences
#39 opened Mar 30, 2021 by samkleeman1
Issue Installing MuPeXI
#38 opened Oct 14, 2020 by leldershaw
2
Will MuPeXI become compatible with NetMHCpan 4.1?
#37 opened Jul 20, 2020 by scyrusm
5
where can I get the file 'reference_peptide_9.txt'?
#34 opened Aug 26, 2019 by 694376965
1
gatk4.0.11.0 normal in the first and tumor in the latter, so allele frequence gives the normal sample now, a wrong value, vcf is different from the example.vcf given by the author
#33 opened Mar 5, 2019 by kobejamescurry
1
a big bug? the tmpClyJgf exists, but it is empty, so can not read. how should I reviese it?
#30 opened Feb 25, 2019 by kobejamescurry
18
let us talk about the Monotonicity of the function calculating priority_score
#29 opened Jan 24, 2019 by kobejamescurry
3
Allele_Frequency column is emitted empty
#28 opened Jan 23, 2019 by ShahiRB
6
AssertionError: amino acid sequence length (80) less than mutation position 81
#27 opened Jan 22, 2019 by d-henness
10
Ensembl references and VEP
#23 opened Jan 14, 2019 by ambj
1
Incorrect translation of a complex mutation
#22 opened Dec 9, 2018 by gilhornung
1
ERROR：vep output file empty
#20 opened Sep 4, 2018 by ghost
1
MuPeXI finds peptide in a transcript which is labeled as "Nonsense mediated decay"
#18 opened Jun 5, 2018 by gilhornung
Gene symbols being split at hyphens '-'
#17 opened May 21, 2018 by ibwoo
ProTip! Adding no:label will show everything without a label.