diff --git a/README.md b/README.md index ff34fa4..bc5445d 100644 --- a/README.md +++ b/README.md @@ -106,7 +106,7 @@ vsi2tif -i /path/to/olympus/wsis/ -o /path/to/converted/wsis/directory/ -b /path Comprehensive CLI documentation can be seen below: ``` -usage: vsi2tif [-h] -i INPUT -o OUTPUT -b BFCONVERT [-c COMPRESSION] [-s TILESIZE] [-q QUALITY] [-m MAX_MEM] [-v VERBOSE] [--remove-name-spaces] [-p PLANE] +usage: vsi2tif [-h] -i INPUT -o OUTPUT -b BFCONVERT [-c COMPRESSION] [-s TILESIZE] [-q QUALITY] [-m MAX_MEM] [-v VERBOSE] [--remove-name-spaces] [-p PLANE] [--noskip-converted] [-f EXTENSION] vsi2tif - simple tool for converting images from cellSens VSI to Generic TIFF @@ -130,7 +130,10 @@ options: set verbosity level - default 1 --remove-name-spaces replace spaces in filename with underscores in batch mode -p PLANE, --plane PLANE - which image plane to convert image from. If set to -1, all series are converted and the largest is kept - default 0 + image plane to convert image from. If set to -1, all series are converted and the largest is kept - default 0 + --noskip-converted To specifically request existing files to be converted again + -f EXTENSION, --extension EXTENSION + extension type to consider (e.g., .vsi) ``` ## [License](https://github.com/andreped/vsi2tif#license) diff --git a/setup.py b/setup.py index 2dcb22d..445ce31 100644 --- a/setup.py +++ b/setup.py @@ -6,7 +6,7 @@ setup( name="vsi2tif", - version="0.1.5", + version="0.1.6", author="André Pedersen, Sebastian Krossa, Erik Smistad, David Bouget", author_email="andrped94@gmail.com", license="MIT",