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.travis.yml
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.travis.yml
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dist: trusty
group: edge
os:
- linux
# travis does not support python on osx yet (https://github.com/travis-ci/travis-ci/issues/4729)
language: python
python:
- "3.8"
addons:
chrome: stable
before_install:
# - sudo apt-get update
# - sudo apt-get -y -o Dpkg::Options::="--force-confnew" install docker-ce
# - wget https://repo.continuum.io/miniconda/Miniconda3-4.5.11-Linux-x86_64.sh -O miniconda.sh
# - bash miniconda.sh -b -p $HOME/miniconda
# - export PATH="$HOME/miniconda/bin:$PATH"
# - hash -r
# - conda config --set always_yes yes --set changeps1 no
# - conda update -q conda
# #- conda info -a
# - pip install docker rq pyyaml psutil tqdm nose fasteners pygments networkx pydot pydotplus
# - pip install entrypoints jupyter coverage codacy-coverage pytest pytest-cov python-coveralls
# - conda install -q pandas numpy
# - conda install -c r r-essentials r-feather
# - conda install -c conda-forge feather-format
# # SoS Notebook
# - pip install jedi notebook nbconvert nbformat pyyaml psutil tqdm scipy markdown matplotlib
# - sudo apt-get install libmagickwand-dev libmagickcore5-extra graphviz
# - pip install pygments ipython wand graphviz
# - pip install git+https://github.com/vatlab/sos.git
# - pip install git+https://github.com/vatlab/sos-bash.git
# - pip install git+https://github.com/vatlab/sos-python.git
# - pip install git+https://github.com/vatlab/sos-r.git
# - pip install selenium
# - google-chrome-stable --headless --disable-gpu --remote-debugging-port=9222 http://localhost &
# - wget https://chromedriver.storage.googleapis.com/73.0.3683.20/chromedriver_linux64.zip -P ~/
# - unzip ~/chromedriver_linux64.zip -d ~/
# - rm ~/chromedriver_linux64.zip
# - sudo mv -f ~/chromedriver /usr/local/share/
# - sudo chmod +x /usr/local/share/chromedriver
# - sudo ln -s /usr/local/share/chromedriver /usr/local/bin/chromedriver
# - "export DISPLAY=:99.0"
# - "sh -e /etc/init.d/xvfb start"
# - sleep 3
sudo: required
services:
- docker
install:
- docker network create sosnet
- docker pull mdabioinfo/sos_notebook_test:latest
- docker pull mdabioinfo/eg_sshd:latest
- cd development
- export COMPOSE_PROJECT_NAME=sosnotebook
- docker-compose up -d
- cd ..
- docker cp . sosnotebook_sos-notebook_1:/home/jovyan
- docker exec -u root sosnotebook_sos-notebook_1 sh ./development/install_sos_notebook.sh
before_script:
# - cd test
# - sh build_test_docker.sh
script:
#- docker exec -u root sosnotebook_sos-notebook_1 pytest ./test -x -v --cov sos_notebook --cov-report=term-missing
- docker exec -u root sosnotebook_sos-notebook_1 mkdir -p /home/jovyan/.sos
- docker exec -u root sosnotebook_sos-notebook_1 mkdir -p /home/jovyan/.local
- docker exec -u root sosnotebook_sos-notebook_1 chown -R jovyan:users /home/jovyan/.sos/
- docker exec -u root sosnotebook_sos-notebook_1 chown -R jovyan:users /home/jovyan/.local/
- docker exec -u root sosnotebook_sos-notebook_1 chown -R jovyan:users /home/jovyan/test/
- docker exec sosnotebook_sos-notebook_1 bash -c 'cd test && pytest -v'
after_success:
- coverage combine
- coveralls
notifications:
email:
recipients:
on_success: never
on_failure: always