setup.py

#!/usr/bin/env python
#
# Copyright (c) Bo Peng and the University of Texas MD Anderson Cancer Center
# Distributed under the terms of the 3-clause BSD License.

import os
import sys

from setuptools import find_packages, setup

_py_ver = sys.version_info
if _py_ver.major == 2 or (_py_ver.major == 3 and
                          (_py_ver.minor, _py_ver.micro) < (6, 0)):
    raise SystemError(
        'sos-notebook requires Python 3.6 or higher. Please upgrade your Python {}.{}.{}.'
        .format(_py_ver.major, _py_ver.minor, _py_ver.micro))

# obtain version of SoS
with open('src/sos_notebook/_version.py') as version:
    for line in version:
        if line.startswith('__version__'):
            __version__ = eval(line.split('=')[1])
            break

kernel_json = {
    "argv": ["python", "-m", "sos_notebook.kernel", "-f", "{connection_file}"],
    "display_name": "SoS",
    "language": "sos",
}

CURRENT_DIR = os.path.abspath(os.path.dirname(__file__))


def get_long_description():
    with open(os.path.join(CURRENT_DIR, "README.md"), "r") as ld_file:
        return ld_file.read()


setup(
    name="sos-notebook",
    version=__version__,
    description='Script of Scripts (SoS): an interactive, cross-platform, and cross-language workflow system for reproducible data analysis',
    long_description=get_long_description(),
    long_description_content_type="text/markdown",
    author='Bo Peng',
    url='https://github.com/vatlab/SOS',
    author_email='Bo.Peng@bcm.edu',
    maintainer='Bo Peng',
    maintainer_email='Bo.Peng@bcm.edu',
    license='3-clause BSD',
    include_package_data=True,
    classifiers=[
        'Development Status :: 4 - Beta',
        'Environment :: Console',
        'License :: OSI Approved :: BSD License',
        'Natural Language :: English',
        'Operating System :: POSIX :: Linux',
        'Operating System :: MacOS :: MacOS X',
        'Operating System :: Microsoft :: Windows',
        'Intended Audience :: Information Technology',
        'Intended Audience :: Science/Research',
        'Programming Language :: Python :: 3 :: Only',
        'Programming Language :: Python :: 3.7',
        'Programming Language :: Python :: 3.8',
        'Programming Language :: Python :: 3.9',
        'Programming Language :: Python :: Implementation :: CPython',
    ],
    zip_safe=False,
    packages=find_packages('src'),
    package_dir={'': 'src'},
    python_requires='>=3.7',
    install_requires=[
        'jupyter_client>=7.0.2',
        'sos>=0.22.0',
        'nbformat',
        'nbconvert>=6.0.1',
        'ipython',
        'ipykernel>=6.0.0',
        # https://github.com/spatialaudio/nbsphinx/issues/563
        'jinja2',
        'notebook>=5.0.0',
        # 'jupyter_contrib_nbextensions',
        'tabulate',
        # 'markdown',
        'pandas',
        'numpy',
        # 'selenium',
        # 'requests',
        # 'pytest',
        'psutil',
        'jupyter_contrib_core',
        'jupyter_contrib_nbextensions',
    ],
    entry_points='''
[sos_converters]
sos-ipynb = sos_notebook.converter:ScriptToNotebookConverter
ipynb-sos = sos_notebook.converter:NotebookToScriptConverter
ipynb-html = sos_notebook.converter:NotebookToHTMLConverter
ipynb-pdf = sos_notebook.converter:NotebookToPDFConverter
ipynb-md = sos_notebook.converter:NotebookToMarkdownConverter
ipynb-ipynb = sos_notebook.converter:NotebookToNotebookConverter
''')