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training-week-2019

Materials for the 2019 incoming student training week. Trello. Slack.

Primary location: PG6 112

Breakout session location: AHC4

Before the Bootcamp

Make sure you complete the FIU Neuro Onboarding!

We also recommend that you at least start learning some programming with Codecademy. The free courses "Learn the Command Line", "Learn Python 2" (although we use Python 3), and "Learn git" are all extremely useful.

Schedule

Thursday, August 15: Introduction and Resources

Time Title Instructor(s)
09:30 Welcome and Overview Dr. Angela Laird
10:30 Dependencies Taylor Salo
12:30 Lunch Break
13:30 Open Science Dr. Angela Laird
14:30 FAIR Principles Dr. Angela Laird
15:30 Program Resources Drs. Anthony Dick and Aaron Mattfeld
16:00 Community Resources Taylor Salo

Friday, August 16: Introduction to Programming

Time Title Instructor(s)
09:30 Basic Command Line Dr. Michael Riedel
10:30 Basics of HPC/SLURM Dr. Michael Riedel
11:30 Basic Python Amanda Renfro
12:30 Lunch Break
13:30 Working with Python Packages Amanda Renfro
14:30 Data Visualization Katherine Bottenhorn
15:30 Overflow Time/Programming Practice

Monday, August 19: MRI and Preprocessing

Time Title Instructor(s)
09:30 MRI Physics Dr. Robert Laird
10:00 MRI Data Types Dr. Angela Laird
10:30 BIDS Dr. Michael Riedel
11:30 Working with Neuroimaging Data in Python Taylor Salo
12:30 Lunch Break
13:30 fMRI Preprocessing Dr. Aaron Mattfeld
15:30 Data Quality Control Dr. Michael Riedel

Wednesday, August 21: Analysis

Time Title Instructor(s)
09:30 fMRI Modeling and GLMs Dr. Jessica Bartley
12:30 Lunch Break
13:30 Structural MRI Analysis Dr. Anthony Dick
13:30 Breakout Session: ID Conn Katherine Bottenhorn

Friday, August 23: Version Control and More Python

Time Title Instructor(s)
09:30 Basics of Docker/Singularity Adam Kimbler
10:30 git/GitHub Katherine Bottenhorn
12:30 Lunch Break
13:30 git/GitHub, continued Katherine Bottenhorn
14:30 Overflow Time/General Q&A
15:30 Closing Comments Dr. Angela Laird