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Installation notes #10

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kbarreto opened this issue Feb 7, 2018 · 0 comments
Open

Installation notes #10

kbarreto opened this issue Feb 7, 2018 · 0 comments

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@kbarreto
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kbarreto commented Feb 7, 2018

I use the package RBioFormats and EBImage often, they are greatly appreciated.

I followed the instruction notes for MacOS on El Capitan (10.11.5); RStudio 1.0.153; R 3.4.1 "Single Candle" with JDK 1.8.0_131-b11 and everything worked great. By adding this line:
sudo ln -f -s $(/usr/libexec/java_home)/jre/lib/server/libjvm.dylib /usr/local/lib
before running:
install.packages("rJava", type="source") as per the installation instructions.

On a different system macOS Sierra (10.12.6); RStudio 1.1.419; R 3.4.3 "Kite-Eating Tree" with JDK "9.0.4+11" trying to install rJava as above gave me the "-fopenmp" error message.

By simply removing the type ="source" line it worked and I was able to install and use RBioFormats:
From install.packages("rJava", type="source")
To install.packages("rJava")

You may want to add this information to the installation instructions.

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